BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0014.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5Z9.1 C0Z5Z9_BREBN Putative ABC transporter permease protein 286 2e-75 B3KAG5.1 B3KAG5_9BACI Putative uncharacterized protein 282 2e-74 Q8DTH6.1 Q8DTH6_STRMU Putative uncharacterized protein 138 6e-31 Q8DTJ0.1 Q8DTJ0_STRMU Putative uncharacterized protein 138 6e-31 A8MG85.1 A8MG85_ALKOO Putative uncharacterized protein 106 2e-21 >C0Z5Z9.1 C0Z5Z9_BREBN Putative ABC transporter permease protein Length = 774 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 131/212 (61%), Positives = 168/212 (79%) Query: 3 MKLLFKLLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLNI 62 MKL K+ RDIKQS GQF++FVLV+AVGAFFY GL SNNL TYTE YF+E+N+SDL + Sbjct: 1 MKLFLKIGRDIKQSIGQFIAFVLVIAVGAFFYGGLVTYSNNLSTYTEGYFQEHNISDLYV 60 Query: 63 YYSQLTQKEIAELSKVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMTKG 122 +Y+Q++Q ++A LS++EGI+K+E RYTFDAT++F G +A LKIHSIP NEIN + +G Sbjct: 61 FYNQISQNDVAVLSEIEGIKKIEARYTFDATQAFKGEKATLKIHSIPVKNEINTITLIEG 120 Query: 123 SLPSTKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGLGENVEHAKKNETQDHKN 182 +PS K+ IV+DS YAKEH + VGD+I IR N + L F ISGLGENVEHAKKNE QDHK Sbjct: 121 KIPSKKNEIVVDSRYAKEHLFQVGDEISIRANERNLTFTISGLGENVEHAKKNEIQDHKT 180 Query: 183 YGIAYVGEEAIPEIAGSFFFNELLVDAKEGYD 214 YG+AY+ EE + EI G+ +NE+++DA EGYD Sbjct: 181 YGVAYIAEETLSEILGALSYNEIMIDATEGYD 212 >B3KAG5.1 B3KAG5_9BACI Putative uncharacterized protein Length = 775 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 129/213 (60%), Positives = 170/213 (79%), Gaps = 1/213 (0%) Query: 3 MKLL-FKLLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLN 61 MK+L KLLRD+KQS GQF++ VLV+AVGAFFYTGL LS+NL YT+ YF+E+NLSDLN Sbjct: 1 MKILALKLLRDMKQSVGQFIAIVLVIAVGAFFYTGLVTLSDNLSGYTKGYFQEHNLSDLN 60 Query: 62 IYYSQLTQKEIAELSKVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMTK 121 +YYSQ++ +++A+L ++GI+ +EGRYT A ++F+ +A L +HSIP NEIN M + Sbjct: 61 VYYSQISAEDVADLRSIDGIQNIEGRYTVQAEQAFEDDKATLTVHSIPVPNEINTSRMME 120 Query: 122 GSLPSTKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGLGENVEHAKKNETQDHK 181 G +P+ + I+LDS YA+ HHY +GD I IRVN+K++ F ISGL ENVEHAKKNETQDH+ Sbjct: 121 GRMPAGPNEILLDSHYAEAHHYRIGDSIRIRVNDKDMTFTISGLIENVEHAKKNETQDHQ 180 Query: 182 NYGIAYVGEEAIPEIAGSFFFNELLVDAKEGYD 214 YGIAY+ EE IPEIAG F+NE+L+DAK+GYD Sbjct: 181 AYGIAYIPEETIPEIAGGMFYNEILIDAKDGYD 213 >Q8DTH6.1 Q8DTH6_STRMU Putative uncharacterized protein Length = 781 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 131/215 (60%), Gaps = 7/215 (3%) Query: 3 MKLLFK-LLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLN 61 MK+L K L RDI+ + QF++ +L+V++G+F + GL++++++L YT+ Y+ +Y+LSD Sbjct: 2 MKILLKKLFRDIRTNIAQFITIILIVSIGSFLFVGLSSVASSLRDYTKNYYHDYHLSDAT 61 Query: 62 IYYSQLTQKEIAELS-KVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMT 120 + + LT K+I + K I++ EGR F+ ++F Y +AL I S +++NR + Sbjct: 62 VNFISLTSKKIDAIKDKYTNIQEAEGRVNFEGKQTFKNYSSALTISSFSPTSKLNRSYIV 121 Query: 121 KGSLPSTKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGLGENVEHAKK----NE 176 +G + I+LDS Y K HHY + D I I++N+K+ F I+G+ EN E K N Sbjct: 122 QGRKKLNNNEILLDSDYIKAHHYKMNDSIQIQINSKKFTFKIAGIIENPEFVMKVSGNNL 181 Query: 177 TQDHKNYGIAYVGEEAIPEIA-GSFFFNELLVDAK 210 T + + +GI Y+ E+ +I+ + +N+LL+ K Sbjct: 182 TPEPQKFGIGYITEQKAFDISKKNHSYNQLLLKIK 216 >Q8DTJ0.1 Q8DTJ0_STRMU Putative uncharacterized protein Length = 780 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 131/215 (60%), Gaps = 7/215 (3%) Query: 3 MKLLFK-LLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLN 61 MK+L K L RDI+ + QF++ +L+V++G+F + GL++++++L YT+ Y+ +Y+LSD Sbjct: 1 MKILLKKLFRDIRTNIAQFITIILIVSIGSFLFVGLSSVASSLRDYTKNYYHDYHLSDAT 60 Query: 62 IYYSQLTQKEIAELS-KVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMT 120 + + LT K+I + K I++ EGR F+ ++F Y +AL I S +++NR + Sbjct: 61 VNFISLTSKKIDAIKDKYTNIQEAEGRVNFEGKQTFKNYSSALTISSFSPTSKLNRSYIV 120 Query: 121 KGSLPSTKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGLGENVEHAKK----NE 176 +G + I+LDS Y K HHY + D I I++N+K+ F I+G+ EN E K N Sbjct: 121 QGRKKLNNNEILLDSDYIKAHHYKMNDSIQIQINSKKFTFKIAGIIENPEFVMKVSGNNL 180 Query: 177 TQDHKNYGIAYVGEEAIPEIA-GSFFFNELLVDAK 210 T + + +GI Y+ E+ +I+ + +N+LL+ K Sbjct: 181 TPEPQKFGIGYITEQKAFDISKKNHSYNQLLLKIK 215 >A8MG85.1 A8MG85_ALKOO Putative uncharacterized protein Length = 771 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 6/215 (2%) Query: 1 VSMKLLFKLLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDL 60 V L KLLRD+K+S QF+S L+ + TGL ++ + A ++ NLSDL Sbjct: 2 VKGALFKKLLRDMKKSKAQFVSIFLMATLAISIMTGLDSVWFTVHNNANAMYQSTNLSDL 61 Query: 61 NIYYSQLTQKEIAELSKVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMT 120 + +++++ + +++G+ +E R+ DA + G + L+I+++ E++ +++P + Sbjct: 62 WVTVMNPSEQQLWAIQRIDGVTHVEKRFITDADTNLPG-KPTLRIYALDEHSTLDQPELQ 120 Query: 121 KGSLPSTKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGLGENVE--HAKKNETQ 178 +G + G+VLDSS+AK H+ +GD I I++NN + I G N E +A KN Sbjct: 121 EGKFSKSGRGVVLDSSFAKVHNLKIGDPISIKLNNVWIRLPIEGFALNSEQVYAVKNTAS 180 Query: 179 ---DHKNYGIAYVGEEAIPEIAGSFFFNELLVDAK 210 D YG + + G +N++ V K Sbjct: 181 IFPDPSTYGFVMIHTSVLERAYGQKIYNQIGVKTK 215 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,449,498,221 Number of extensions: 60928142 Number of successful extensions: 147902 Number of sequences better than 1.0e-05: 165 Number of HSP's gapped: 147928 Number of HSP's successfully gapped: 165 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)