BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0013.p (522 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5Z9.1 C0Z5Z9_BREBN Putative ABC transporter permease protein 676 0.0 B3KAG5.1 B3KAG5_9BACI Putative uncharacterized protein 665 0.0 Q8DTJ0.1 Q8DTJ0_STRMU Putative uncharacterized protein 281 1e-73 Q8DTH6.1 Q8DTH6_STRMU Putative uncharacterized protein 281 1e-73 B8FU68.1 B8FU68_DESHD Putative uncharacterized protein 227 2e-57 >C0Z5Z9.1 C0Z5Z9_BREBN Putative ABC transporter permease protein Length = 774 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/521 (63%), Positives = 418/521 (80%), Gaps = 1/521 (0%) Query: 1 MSKVIPXXXXXXXXXXXXXXMSRIIDSQRNQIGIMKALGIKNNSIMLHYMGYPVLIGIVG 60 MS VIP MSR+IDSQRNQ+GIMKALG+KN SI+LHYMGYPVL I+G Sbjct: 254 MSMVIPFVLFLIVAIILFLTMSRMIDSQRNQVGIMKALGVKNRSILLHYMGYPVLASIIG 313 Query: 61 ALLGYVISVAVFVPLISVSNARSYSLPGIQFALSFDLILPPVIVSSLFGMLACYLSGRNL 120 +++G I+ VFVP ++ S+AR+YSLPGI ++LSF +PP+I SS FG+LACYLSGR++ Sbjct: 314 SIIGCAIAALVFVPFVTASSARAYSLPGITYSLSFYTFIPPIIFSSAFGILACYLSGRSI 373 Query: 121 LKERAAQAMRPKPSKSMKAILVERIPGLWNRIPFDYKLILRNIFLNKKKVLASSVGVMVS 180 LKE AAQAMRPKP K MK +L+ERIPG+W+ I + YKLILRNIFLNK+K +ASS+GV+VS Sbjct: 374 LKECAAQAMRPKPPKKMKTLLIERIPGIWSHISYSYKLILRNIFLNKQKAIASSIGVVVS 433 Query: 181 TVLLITAFGTQASLQKVAGQFEQVYTYDLKVDFKSGETLDEITLPAGVKSHHVLSAMPIE 240 TVLLITAFGTQ++LQKVA Q E+VYTYDL+VD+ G ++D + LP+G+K+ + LS P+E Sbjct: 434 TVLLITAFGTQSALQKVASQMEEVYTYDLRVDYMLGTSIDTVKLPSGIKNGYSLSTFPVE 493 Query: 241 LKNENQTTEKASLLVTEKDNNLIHFYDEKDNPLYLDHNGVLVPKSYADHYGIAKGDTVQI 300 ++ + A+L+VTEK+N LIHF+DE +N + L++NGVLVPKSYAD Y I+ GDT+ I Sbjct: 494 FIKGDEK-DNATLVVTEKENTLIHFFDENNNRITLENNGVLVPKSYADKYHISAGDTIPI 552 Query: 301 AFTGSGMGNKVVEMKVLNISTQYSSPSFYITPEYLTSFGLTYKPTSLLVETDPSADQAGI 360 F + NK V+MKVL+ISTQYS+PSFYITP+YL SFG+ Y PTSL VE + SAD + Sbjct: 553 TFKAPELQNKSVDMKVLHISTQYSNPSFYITPDYLKSFGIDYSPTSLFVEANSSADLISV 612 Query: 361 RSYFEQDHRVDAIYDKADLRKEARYILQQNSFVFIMFIICAVILSFGAIYTISSINIYER 420 R++FEQD V+ + D+ DL+K A YIL+QN+FVFIMFI+CAVILSFGAIY+ISSINIYER Sbjct: 613 RNFFEQDPHVETLADRDDLKKTAEYILKQNNFVFIMFIVCAVILSFGAIYSISSINIYER 672 Query: 421 NRELATLKVLGYYKNKINRLIFFENIMITTLAVLAALPVCGYVYKMVVEALSSTHQQIPD 480 NRELATLKVLGY K KINRLIFFEN+++TT A+L ALP+ YVY ++V+ALSSTHQQIPD Sbjct: 673 NRELATLKVLGYQKYKINRLIFFENLILTTFAILVALPISSYVYSVIVKALSSTHQQIPD 732 Query: 481 QLNIWFVLMSALVAFALTLLANLPLRRKVNRINMIESLKGL 521 QL I +L+S +A+ LT+L+NL L+RKV INMIESLKG+ Sbjct: 733 QLTIPILLVSVFLAYLLTILSNLLLQRKVTNINMIESLKGV 773 >B3KAG5.1 B3KAG5_9BACI Putative uncharacterized protein Length = 775 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/523 (63%), Positives = 415/523 (79%), Gaps = 3/523 (0%) Query: 1 MSKVIPXXXXXXXXXXXXXXMSRIIDSQRNQIGIMKALGIKNNSIMLHYMGYPVLIGIVG 60 MS+VIP MSRIIDSQRNQ+GIMKALG+K SIMLHYMGYPVL G++G Sbjct: 255 MSRVIPIVLFLIEAVILFLIMSRIIDSQRNQVGIMKALGVKKRSIMLHYMGYPVLAGVIG 314 Query: 61 ALLGYVISVAVFVPLISVSNARSYSLPGIQFALSFDLILPPVIVSSLFGMLACYLSGRNL 120 ++LGY I+ A+F+PLI+ S RSYSLP + F+LSF +LPP+I SS FGML+CY SGR + Sbjct: 315 SILGYAIAAALFIPLITTSIGRSYSLPDLTFSLSFFTLLPPMICSSAFGMLSCYFSGRAI 374 Query: 121 LKERAAQAMRPKPSKSMKAILVERIPGLWNRIPFDYKLILRNIFLNKKKVLASSVGVMVS 180 L+ERAAQAMRPKP K MK +L+E IPG+W+R+ + K+ILRNIFLNK+K ASSVGV+VS Sbjct: 375 LQERAAQAMRPKPPKKMKRLLIENIPGMWSRLSYSNKIILRNIFLNKQKAFASSVGVVVS 434 Query: 181 TVLLITAFGTQASLQKVAGQFEQVYTYDLKVDFKSGETLDEITLPAGVKSHHVLSAMPIE 240 TVLLITAFGTQ +L KVAGQ E+V TYDL+VD+ G D LP+G+ H+ LS P+E Sbjct: 435 TVLLITAFGTQTALLKVAGQIEEVNTYDLRVDYAIGSFPDRAALPSGIVDHYGLSTYPVE 494 Query: 241 L-KNENQTTEKASLLVTEKDNNLIHFYDEKDNPLYLDHNGVLVPKSYADHYGIAKGDTVQ 299 L + EN+ E A+L+VTE+DN LI FYDE+ N L L+ +GVLVPKSYAD Y IA+GDT+Q Sbjct: 495 LIQGENK--ENATLVVTEQDNELIRFYDEQGNRLSLEDHGVLVPKSYADQYHIAEGDTIQ 552 Query: 300 IAFTGSGMGNKVVEMKVLNISTQYSSPSFYITPEYLTSFGLTYKPTSLLVETDPSADQAG 359 + T + +V+MKVL+ISTQYS+PSFY TP Y+ S G+ Y P+SLLV +AD G Sbjct: 553 LQITAPELNQTIVDMKVLDISTQYSNPSFYSTPGYMKSLGIDYDPSSLLVSVHSAADLVG 612 Query: 360 IRSYFEQDHRVDAIYDKADLRKEARYILQQNSFVFIMFIICAVILSFGAIYTISSINIYE 419 +RS+FEQ+ +V+AI DK DL+K A+Y+L+QNSF+FIMFI+CAVILSFGAIYTISSINIYE Sbjct: 613 VRSFFEQEPQVEAIADKDDLKKSAQYMLKQNSFIFIMFIVCAVILSFGAIYTISSINIYE 672 Query: 420 RNRELATLKVLGYYKNKINRLIFFENIMITTLAVLAALPVCGYVYKMVVEALSSTHQQIP 479 RNRELATLKVLGY K KINRLIF EN+++T AV+ ALP+ GYVY ++++ALSSTHQQIP Sbjct: 673 RNRELATLKVLGYPKRKINRLIFSENMLLTAFAVIVALPISGYVYSIIIQALSSTHQQIP 732 Query: 480 DQLNIWFVLMSALVAFALTLLANLPLRRKVNRINMIESLKGLE 522 DQLN+ +L S ++AF LTLL+NL LR+KV RI+MIESLKG+E Sbjct: 733 DQLNLVIMLASVVLAFFLTLLSNLMLRKKVTRIHMIESLKGVE 775 >Q8DTJ0.1 Q8DTJ0_STRMU Putative uncharacterized protein Length = 780 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 175/528 (33%), Positives = 289/528 (54%), Gaps = 12/528 (2%) Query: 1 MSKVIPXXXXXXXXXXXXXXMSRIIDSQRNQIGIMKALGIKNNSIMLHYMGYPVLIGIVG 60 +S+VIP M+R+I R Q GIM++LG + I +Y+ Y +L +G Sbjct: 259 LSRVIPILFFIVAAVITFISMTRLIQQNRVQTGIMRSLGKRIRYIRSYYLFYTLLTSSIG 318 Query: 61 ALLGYVISVAVFVPLISVSNARSYSLPGIQFALSFDLILPPVIVSSLFGMLACYLSGRNL 120 +G V++ F + + Y+LP + ++P + LFG+LA Y S R + Sbjct: 319 TFIGSVLAYFAFTDIGEAQVSSLYALPNYHVKIELQSLIPSFCLVLLFGLLAIYFSTRKV 378 Query: 121 LKERAAQAMRPKPSKSMKAILVERIPGLWNRIPFDYKLILRNIFLNKKKVLASSVGVMVS 180 LKER A +R +P K++K IL+ERIP LW + + K ++RNIFLNK + + +GV +S Sbjct: 379 LKERPANLIRQEPPKNIKGILLERIPFLWRYLSYGSKYVIRNIFLNKIRFCLNLLGVALS 438 Query: 181 TVLLITAFGTQASLQKVAG-QFEQVYTYDLKV-DFKSGETLDEITLPAGVKSHHVLSAMP 238 +++I AFG ++ V + V TY++ + K D+++ +K L Sbjct: 439 FLMIILAFGYYNAMTTVVNTEINDVNTYNISIISPKINSIQDKLSNNPHLKFEK-LDIQK 497 Query: 239 IELKNENQTTEKASLLVTEKDNNLIHFYDEKDNPLYLDHNGVLVPKSYADHYGIAKGDTV 298 +EL N + +L + + + + Y + L NG+++PK YA+ + GD V Sbjct: 498 LELGQGNNSIA-TTLYASSQKEHFMKVYKKNGQELSHYSNGIVIPKVYANKLHLKIGDKV 556 Query: 299 QIAFTGSGMGNKVVEMKVLNISTQYSSPSFYITPEYLTSFGLTYKPTSLLVETDPSADQA 358 ++AF+ + ++++V ISTQYSS +YL G+T P+ LL++ ++++ Sbjct: 557 RLAFSNTQQS--PIKVRVTAISTQYSSKFIVADADYLKEQGVTLHPSMLLIQKGKNSNEK 614 Query: 359 GIRSYFEQDHRV---DAIYD-KADLRKEARYILQQNSFVFIMFIICAVILSFGAIYTISS 414 S Q +V D Y K D+R IL + ++F+ICA+ L+ IY ISS Sbjct: 615 T--SQLIQSAKVIDKDLTYTTKKDVRSNMNAILSTTFPMVVLFLICAMSLTVATIYNISS 672 Query: 415 INIYERNRELATLKVLGYYKNKINRLIFFENIMITTLAVLAALPVCGYVYKMVVEALSST 474 INI++R R++ATLKVLGY KNK+N LIF ENI+I+ +A+ ALPV ++ + + A+++ Sbjct: 673 INIFDRTRDIATLKVLGYSKNKVNNLIFKENIIISCVAMGFALPVGHSLFILFINAMTTE 732 Query: 475 HQQIPDQLNIWFVLMSALVAFALTLLANLPLRRKVNRINMIESLKGLE 522 Q +P++L W ++ + +T+L+NL L RKV I+MIE LK +E Sbjct: 733 LQAMPNELPYWCFALAIVCVLGITILSNLLLHRKVKAIDMIEGLKSIE 780 >Q8DTH6.1 Q8DTH6_STRMU Putative uncharacterized protein Length = 781 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 175/528 (33%), Positives = 289/528 (54%), Gaps = 12/528 (2%) Query: 1 MSKVIPXXXXXXXXXXXXXXMSRIIDSQRNQIGIMKALGIKNNSIMLHYMGYPVLIGIVG 60 +S+VIP M+R+I R Q GIM++LG + I +Y+ Y +L +G Sbjct: 260 LSRVIPILFFIVAAVITFISMTRLIQQNRVQTGIMRSLGKRIRYIRSYYLFYTLLTSSIG 319 Query: 61 ALLGYVISVAVFVPLISVSNARSYSLPGIQFALSFDLILPPVIVSSLFGMLACYLSGRNL 120 +G V++ F + + Y+LP + ++P + LFG+LA Y S R + Sbjct: 320 TFIGSVLAYFAFTDIGEAQVSSLYALPNYHVKIELQSLIPSFCLVLLFGLLAIYFSTRKV 379 Query: 121 LKERAAQAMRPKPSKSMKAILVERIPGLWNRIPFDYKLILRNIFLNKKKVLASSVGVMVS 180 LKER A +R +P K++K IL+ERIP LW + + K ++RNIFLNK + + +GV +S Sbjct: 380 LKERPANLIRQEPPKNIKGILLERIPFLWRYLSYGSKYVIRNIFLNKIRFCLNLLGVALS 439 Query: 181 TVLLITAFGTQASLQKVAG-QFEQVYTYDLKV-DFKSGETLDEITLPAGVKSHHVLSAMP 238 +++I AFG ++ V + V TY++ + K D+++ +K L Sbjct: 440 FLMIILAFGYYNAMTTVVNTEINDVNTYNISIISPKINSIQDKLSNNPHLKFEK-LDIQK 498 Query: 239 IELKNENQTTEKASLLVTEKDNNLIHFYDEKDNPLYLDHNGVLVPKSYADHYGIAKGDTV 298 +EL N + +L + + + + Y + L NG+++PK YA+ + GD V Sbjct: 499 LELGQGNNSIA-TTLYASSQKEHFMKVYKKNGQELSHYSNGIVIPKVYANKLHLKIGDKV 557 Query: 299 QIAFTGSGMGNKVVEMKVLNISTQYSSPSFYITPEYLTSFGLTYKPTSLLVETDPSADQA 358 ++AF+ + ++++V ISTQYSS +YL G+T P+ LL++ ++++ Sbjct: 558 RLAFSNTQQS--PIKVRVTAISTQYSSKFIVADADYLKEQGVTLHPSMLLIQKGKNSNEK 615 Query: 359 GIRSYFEQDHRV---DAIYD-KADLRKEARYILQQNSFVFIMFIICAVILSFGAIYTISS 414 S Q +V D Y K D+R IL + ++F+ICA+ L+ IY ISS Sbjct: 616 T--SQLIQSAKVIDKDLTYTTKKDVRSNMNAILSTTFPMVVLFLICAMSLTVATIYNISS 673 Query: 415 INIYERNRELATLKVLGYYKNKINRLIFFENIMITTLAVLAALPVCGYVYKMVVEALSST 474 INI++R R++ATLKVLGY KNK+N LIF ENI+I+ +A+ ALPV ++ + + A+++ Sbjct: 674 INIFDRTRDIATLKVLGYSKNKVNNLIFKENIIISCVAMGFALPVGHSLFILFINAMTTE 733 Query: 475 HQQIPDQLNIWFVLMSALVAFALTLLANLPLRRKVNRINMIESLKGLE 522 Q +P++L W ++ + +T+L+NL L RKV I+MIE LK +E Sbjct: 734 LQAMPNELPYWCFALAIVCVLGITILSNLLLHRKVKAIDMIEGLKSIE 781 >B8FU68.1 B8FU68_DESHD Putative uncharacterized protein Length = 792 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 156/536 (29%), Positives = 275/536 (51%), Gaps = 22/536 (4%) Query: 1 MSKVIPXXXXXXXXXXXXXXMSRIIDSQRNQIGIMKALGIKNNSIMLHYMGYPVLIGIVG 60 M+ + P M+R+I++QR +G+ KALG + IMLHY YP+L+GI+G Sbjct: 265 MAAIFPMLFFIASAVIIYITMTRMIENQRTLMGVFKALGYSDWDIMLHYQTYPLLVGILG 324 Query: 61 ALLGYVISVAVFV--PLISVSNARSYSLPGIQFALSFDLILPPVIVSSLFGMLACYLSGR 118 ++LG +I + F+ L+ + N+ Y+LP ++ +++P + + F + A Y + R Sbjct: 325 SILGSLIGL-FFIGEALLGIFNS-FYNLPTENSSVQLAMVVPASLTALFFCVFAGYNACR 382 Query: 119 NLLKERAAQAMRPKPSKSMKAILVERIPGLWNRIPFDYKLILRNIFLNKKKVLASSVGVM 178 L+ A++MRPKP S + L+E + W R+ F +K+I RN+F K++ +SVGV+ Sbjct: 383 KELRLVPAESMRPKPPASGRKTLLENLGFFWQRLNFSWKIIFRNLFRYKRRSALASVGVI 442 Query: 179 VSTVLLITAFGTQASLQKV-AGQFEQVYTYDLKVDFKSGETLDEITLPAGVKSHHVLSAM 237 S LL+ A ++S+ + A Q+E++ +DLK++F +DE++ + HV S Sbjct: 443 FSMALLLIALAFRSSMGNLMAMQYEEIQKFDLKINFTQMLAVDELSTIRNLA--HVKSVE 500 Query: 238 PIELKNENQTT-----EKASLLVTEKDNNLIHFYDEKDNPLYLDHNGVLVPKSYADHYGI 292 P+ L+ + T + +L +++ L YD K L +GVL+P + G+ Sbjct: 501 PV-LETGMELTYGWKKKDIGVLALDREAQLYGVYDRKGKAAILPSDGVLLPARLMETLGL 559 Query: 293 AKGDTVQIA--FTGSGMGNKVVEMKVLNISTQYSSPSFYITPEY---LTSFGLTYKPTSL 347 GD V + + G + V ++Q+ S + +Y L G Sbjct: 560 QTGDRVTLRSYYPGKNTDRDKKTVVVKGETSQFIGQSAVCSMDYIDYLLDEGAVVNGAH- 618 Query: 348 LVETDPSADQAGIRSYFEQDHRVDAIYDKADLRKEARYILQQ-NSFVFIMFIICAVILSF 406 ++ D + + + E ++ I KA++ LQ NS +F M + A IL+ Sbjct: 619 -IKLDDGQYEKEVTAKLEDILTINTIQSKAEVVANTNKQLQSMNSIIFFM-LFGASILTI 676 Query: 407 GAIYTISSINIYERNRELATLKVLGYYKNKINRLIFFENIMITTLAVLAALPVCGYVYKM 466 IY I++INI+ER RE+ATL VLG+ ++ L+F EN I+ +L P+ ++ ++ Sbjct: 677 AVIYNITNINIFERRREIATLSVLGFTSAELKSLVFNENFFISAFGILIGAPLGRFIAEV 736 Query: 467 VVEALSSTHQQIPDQLNIWFVLMSALVAFALTLLANLPLRRKVNRINMIESLKGLE 522 ++ ++ Q+P + L++A + A T +AN LR K+ I+M+ESLK E Sbjct: 737 AIDTQATETMQLPMVMEPANYLLAAALIIAFTAIANWLLRNKITAIDMVESLKSAE 792 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,773,422,759 Number of extensions: 113596212 Number of successful extensions: 355026 Number of sequences better than 1.0e-05: 366 Number of HSP's gapped: 354609 Number of HSP's successfully gapped: 382 Length of query: 522 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 382 Effective length of database: 1,741,754,103 Effective search space: 665350067346 Effective search space used: 665350067346 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)