BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0011.p (204 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF85.1 B3KF85_9BACI Transcriptional regulator domain protein 345 1e-93 Q2B1F9.1 Q2B1F9_9BACI DNA-binding response regulator 257 4e-67 B3K4G8.1 B3K4G8_9BACI Transcriptional regulator domain protein 252 1e-65 A4IPQ9.1 A4IPQ9_GEOTN DNA-binding response regulator 241 3e-62 B4BNU2.1 B4BNU2_9BACI Two component transcriptional regulator, w... 241 3e-62 >B3KF85.1 B3KF85_9BACI Transcriptional regulator domain protein Length = 225 Score = 345 bits (886), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 169/204 (82%), Positives = 180/204 (88%) Query: 1 LEQRGYSVQWLLSGEGAEKEVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLSAR 60 LEQRGYSVQWLL+GEGAEKEVNQ +IVILDIMLPGLDGFTVG+RLKK A AVPILLL+AR Sbjct: 22 LEQRGYSVQWLLTGEGAEKEVNQQDIVILDIMLPGLDGFTVGRRLKKTASAVPILLLTAR 81 Query: 61 TSVDDKVDGLQFADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHIEVDPEAQMV 120 TS+DDKVDGLQFADDYLTKPFH+DELVAR+EV N IEVDPE QM+ Sbjct: 82 TSIDDKVDGLQFADDYLTKPFHTDELVARIEVLIRRSGGSTSDRISLGNQIEVDPEGQMI 141 Query: 121 FDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMVHIRRLRQ 180 FDK TGEEIILTGKQHQILMYF+RHPN+VL KEQIYEAIWEEAYITGDKTLMVHI RLRQ Sbjct: 142 FDKYTGEEIILTGKQHQILMYFIRHPNQVLTKEQIYEAIWEEAYITGDKTLMVHIHRLRQ 201 Query: 181 KLERNPDSPEIIETLKGIGYRVKL 204 KLER+PDSPEIIETLKGIGYRVKL Sbjct: 202 KLERHPDSPEIIETLKGIGYRVKL 225 >Q2B1F9.1 Q2B1F9_9BACI DNA-binding response regulator Length = 225 Score = 257 bits (657), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 127/203 (62%), Positives = 155/203 (76%), Gaps = 1/203 (0%) Query: 1 LEQRGYSVQWLLSGEGAEKEVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLSAR 60 L ++GYSV WL SGEGA + + ++VILD+MLPGLDGFTVG+RLKK AP +PIL+LSAR Sbjct: 23 LLEKGYSVDWLQSGEGAAQAAARADLVILDVMLPGLDGFTVGQRLKKDAPGIPILMLSAR 82 Query: 61 TSVDDKVDGLQFADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHIEVDPEAQMV 120 T+VDDK+ GLQFADDYLTKPFH +EL AR++V H+EV + Sbjct: 83 TAVDDKLQGLQFADDYLTKPFHPEELAARVDVLLRRYGKPEQSRLLL-RHLEVSLGENRI 141 Query: 121 FDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMVHIRRLRQ 180 D R+GEEIILTGKQHQI MY LRHPN++L KEQI+EA+W E Y+ GDKTLMVHIR LR+ Sbjct: 142 TDTRSGEEIILTGKQHQIFMYMLRHPNQILTKEQIFEAVWGEPYMDGDKTLMVHIRYLRE 201 Query: 181 KLERNPDSPEIIETLKGIGYRVK 203 K+E NP SP I+ET++GIGYRVK Sbjct: 202 KIEENPGSPAILETIRGIGYRVK 224 >B3K4G8.1 B3K4G8_9BACI Transcriptional regulator domain protein Length = 224 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/203 (60%), Positives = 153/203 (75%), Gaps = 1/203 (0%) Query: 1 LEQRGYSVQWLLSGEGAEKEVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLSAR 60 L +GY V+WLLSGE A +E +V+LD+MLPGLDGFTVG+RLKKA P +PIL+LSAR Sbjct: 22 LRDKGYEVRWLLSGEQAVQEAAPCAVVVLDVMLPGLDGFTVGQRLKKAYPGLPILMLSAR 81 Query: 61 TSVDDKVDGLQFADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHIEVDPEAQMV 120 TS+DDK+ GL+FADDYLTKPFH DEL ARLEV H+ V + + Sbjct: 82 TSIDDKLQGLEFADDYLTKPFHPDELAARLEV-LLRRSVVKSAEPIRVKHLSVYEDENRI 140 Query: 121 FDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMVHIRRLRQ 180 ++ TGEE +LTGKQHQI MY L+H +V+ KEQIYE++W E+YI GDKTLMVHIR LR+ Sbjct: 141 VNEDTGEETLLTGKQHQIFMYLLQHQGRVMTKEQIYESVWGESYIEGDKTLMVHIRYLRE 200 Query: 181 KLERNPDSPEIIETLKGIGYRVK 203 KLER+P +PEIIET++G+GYRV+ Sbjct: 201 KLERDPANPEIIETVRGLGYRVR 223 >A4IPQ9.1 A4IPQ9_GEOTN DNA-binding response regulator Length = 222 Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/203 (57%), Positives = 151/203 (74%), Gaps = 2/203 (0%) Query: 1 LEQRGYSVQWLLSGEGAEKEVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLSAR 60 L +RG+ V WL SGE E+ + ++VILD+MLPGLDGF++GKR+KK P +PIL+LSAR Sbjct: 21 LTERGHHVTWLQSGEEIEEHLAHCDLVILDVMLPGLDGFSIGKRIKKEQPDLPILMLSAR 80 Query: 61 TSVDDKVDGLQFADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHIEVDPEAQMV 120 T+++DKV+GL FADDYLTKPFH DEL AR+EV H+ + + + Sbjct: 81 TAIEDKVEGLSFADDYLTKPFHPDELAARVEV--LLRRFNKNDEILKLKHLTIHTKDMRI 138 Query: 121 FDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMVHIRRLRQ 180 + TGEEI+LTGKQ+QI YFLRH N++L KEQ+YE +W E YI GDKTLMVHIR LR+ Sbjct: 139 VNHETGEEILLTGKQYQIFQYFLRHLNQILTKEQLYEGVWGEPYIEGDKTLMVHIRYLRE 198 Query: 181 KLERNPDSPEIIETLKGIGYRVK 203 KLE++P +PEIIET++GIGYRV+ Sbjct: 199 KLEKDPKNPEIIETIRGIGYRVR 221 >B4BNU2.1 B4BNU2_9BACI Two component transcriptional regulator, winged helix family Length = 222 Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/203 (57%), Positives = 151/203 (74%), Gaps = 2/203 (0%) Query: 1 LEQRGYSVQWLLSGEGAEKEVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLSAR 60 L +RG+ V WL SGE E+ + ++VILD+MLPGLDGF++GKR+KK P +PIL+LSAR Sbjct: 21 LTERGHHVTWLQSGEEIEEHLAHCDLVILDVMLPGLDGFSIGKRIKKEQPDLPILMLSAR 80 Query: 61 TSVDDKVDGLQFADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHIEVDPEAQMV 120 T+++DKV+GL FADDYLTKPFH DEL AR+EV H+ + + + Sbjct: 81 TAIEDKVEGLSFADDYLTKPFHPDELAARVEV--LLRRFNKNDEILKLKHLTIHTKDMRI 138 Query: 121 FDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMVHIRRLRQ 180 + TGEEI+LTGKQ+QI YFLRH N++L KEQ+YE +W E YI GDKTLMVHIR LR+ Sbjct: 139 VNHETGEEILLTGKQYQIFQYFLRHLNQILTKEQLYEGVWGEPYIEGDKTLMVHIRYLRE 198 Query: 181 KLERNPDSPEIIETLKGIGYRVK 203 KLE++P +PEIIET++GIGYRV+ Sbjct: 199 KLEKDPKNPEIIETIRGIGYRVR 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,159,188,336 Number of extensions: 42463844 Number of successful extensions: 185707 Number of sequences better than 1.0e-05: 17882 Number of HSP's gapped: 155737 Number of HSP's successfully gapped: 18203 Length of query: 204 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 75 Effective length of database: 1,845,385,268 Effective search space: 138403895100 Effective search space used: 138403895100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)