BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0008.p (232 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF86.1 B3KF86_9BACI Sensor protein EC=2.7.13.3 394 e-108 Q2B1G0.1 Q2B1G0_9BACI Sensor protein EC=2.7.13.3 233 1e-59 C2W6Q4.1 C2W6Q4_BACCE Putative uncharacterized protein 192 3e-47 A4IPR0.1 A4IPR0_GEOTN Sensor protein EC=2.7.13.3 192 3e-47 B4BNU1.1 B4BNU1_9BACI Sensor protein EC=2.7.13.3 192 3e-47 >B3KF86.1 B3KF86_9BACI Sensor protein EC=2.7.13.3 Length = 336 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/232 (82%), Positives = 203/232 (87%) Query: 1 MDEIDQLGSSFNWMIQQLEDSRKXXXXXXXXXXXXIANLSHDLRTPLTILRGHVTRLNKE 60 MDEIDQLGSSFNWMIQQLEDSRK IANLSHDLRTPLTILRGHVTRLNKE Sbjct: 105 MDEIDQLGSSFNWMIQQLEDSRKREYEEELLRHRLIANLSHDLRTPLTILRGHVTRLNKE 164 Query: 61 SMSVEGQNSLTEMNHTITRVGDLMDDLLSYTLLTSGKHPFRPTSTDIVRLVRAAVAAWYD 120 MS EGQNSLTE+NHTITRVGDLMDDLLSYTLLTSGKHPF P STDI RLVRA+VAAWY Sbjct: 165 PMSQEGQNSLTEINHTITRVGDLMDDLLSYTLLTSGKHPFVPVSTDIGRLVRASVAAWYP 224 Query: 121 AFEEKEIQLDVDLPAEKTFYWEADPKWITRVLDNLFQNILRHAAGGKYAHIGVDVDKEQI 180 FEEKEIQLDVDLP E+TFYWEADP W+TRVLDNLFQNILRHAA GKYA+I VDV+KEQI Sbjct: 225 VFEEKEIQLDVDLPGEETFYWEADPNWMTRVLDNLFQNILRHAAEGKYANIVVDVEKEQI 284 Query: 181 IIADKGPGMDHSSYGRGAGIGLSASNYMLNKMRLKADFTSDENGTRVAIGRA 232 IIAD+GPG+D+SSY GAGIGLS SNYML KM+L+ADFTS+ENGT V IGRA Sbjct: 285 IIADRGPGLDNSSYELGAGIGLSTSNYMLKKMKLRADFTSNENGTSVVIGRA 336 >Q2B1G0.1 Q2B1G0_9BACI Sensor protein EC=2.7.13.3 Length = 459 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/230 (50%), Positives = 154/230 (66%), Gaps = 1/230 (0%) Query: 2 DEIDQLGSSFNWMIQQLEDSRKXXXXXXXXXXXXIANLSHDLRTPLTILRGHVTRLNKES 61 DEI QL +FN MI QLE R+ IANLSHDLRTPLT +RGH L KE Sbjct: 220 DEIGQLEGAFNRMIDQLETGRQREREEEELRRQLIANLSHDLRTPLTTIRGHAYSLKKEI 279 Query: 62 MSVEGQNSLTEMNHTITRVGDLMDDLLSYTLLTSGKHPFRPTSTDIVRLVRAAVAAWYDA 121 S +G+ SL +++ + +G L+++LLSYTLLTSGK+P+ P TDIVRLV+ + AAWY Sbjct: 280 TSEKGRESLELIDNKVNYLGQLIENLLSYTLLTSGKYPYNPEKTDIVRLVKTSAAAWYPV 339 Query: 122 FEEKEIQLDVDLPAEKTFYWEADPKWITRVLDNLFQNILRHAAGGKYAHIGVDVDKEQII 181 FE + +LD++LP +K+ YW+ D +W+ R+LDNLFQNILRHAA G+Y + +D +KE + Sbjct: 340 FENEGFELDIELP-DKSIYWDIDGQWMNRILDNLFQNILRHAAQGRYVGVLLDAEKEILA 398 Query: 182 IADKGPGMDHSSYGRGAGIGLSASNYMLNKMRLKADFTSDENGTRVAIGR 231 + DKGPGM S G+GAGIGLS + ML +M L S GT + IGR Sbjct: 399 VKDKGPGMTGESAGKGAGIGLSIAALMLKEMDLDLQINSSSCGTEMVIGR 448 >C2W6Q4.1 C2W6Q4_BACCE Putative uncharacterized protein Length = 448 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 142/231 (61%), Gaps = 2/231 (0%) Query: 2 DEIDQLGSSFNWMIQQLEDSRKXXXXXXXXXXXXIANLSHDLRTPLTILRGHVTRLNKES 61 DEI L SFN M++ L+ SR IA+LSHDLRTPLT +R + L +E Sbjct: 217 DEIGLLEESFNRMVEALQQSRLKEAEEEQFRRKLIADLSHDLRTPLTTMRAQIDSLKEEV 276 Query: 62 MSVEGQNSLTEMNHTITRVGDLMDDLLSYTLLTSGKHPFRPTSTDIVRLVRAAVAAWYDA 121 +SV+G ++ ++ I V +L+++LLSY+L+++ K+P+ P TD+ RL+R VA+WYD Sbjct: 277 VSVKGYQTMLLIDEKINYVAELIENLLSYSLISAKKYPYHPERTDMTRLMRKLVASWYDI 336 Query: 122 FEEKEIQLDVDLPAEKTFYWEADPKWITRVLDNLFQNILRHAAGGKYAHIGVDVDKEQII 181 +EK ++D+ +P EK +W D W R++DN+ QN++RHA GGK+ I +D +++ I Sbjct: 337 LDEKGFEVDIVIP-EKQLFWNIDENWFQRMIDNVIQNVVRHADGGKFIGIYIDHEEKTIT 395 Query: 182 IADKGPGMDH-SSYGRGAGIGLSASNYMLNKMRLKADFTSDENGTRVAIGR 231 + D GPG H S +GAGIGLS M +M ++ D SD+ G R + Sbjct: 396 VVDHGPGFQHVHSPNKGAGIGLSIIAVMAKEMEIEWDIDSDDTGARFTFKK 446 >A4IPR0.1 A4IPR0_GEOTN Sensor protein EC=2.7.13.3 Length = 448 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 142/232 (61%), Gaps = 6/232 (2%) Query: 2 DEIDQLGSSFNWMIQQLEDSRKXXXXXXXXXXXXIANLSHDLRTPLTILRGHVTRLNKES 61 DEI QL +FN M+ +L +SRK IANLSHDLRTPLT +R H L KE+ Sbjct: 213 DEIGQLEMAFNQMVDELRESRKREEAEEQLRKELIANLSHDLRTPLTKIRAHAYTLEKEA 272 Query: 62 MSVEGQNSLTEMNHTITRVGDLMDDLLSYTLLTSGKHPFRPTSTDIVRLVRAAVAAWYDA 121 ++ + ++ + +++++ L+++L+SYTLL + K + PT TD+VRL R+ +AAWY A Sbjct: 273 LTPVARQAVNMIEQSVSKMDRLIENLISYTLLNAKKLKYEPTPTDVVRLARSFIAAWYPA 332 Query: 122 FEEKEIQLDVDLPAEKTFYWEADPKWITRVLDNLFQNILRHAAGGKYAHIGVDVDK---- 177 FE++ +DV L + +W DP W+ R+ DNLFQN++RHA GKY IG+ K Sbjct: 333 FEKEGFFIDVQLDDLEQKHWNVDPLWMERIFDNLFQNVIRHAKDGKY--IGLKTKKTDSY 390 Query: 178 EQIIIADKGPGMDHSSYGRGAGIGLSASNYMLNKMRLKADFTSDENGTRVAI 229 + +++ D+G G H S +GAGIGL+ + M+ KM L S E GT + I Sbjct: 391 DALVVLDRGKGFRHKSSEKGAGIGLAIVDLMVKKMELDWKIESSETGTIITI 442 >B4BNU1.1 B4BNU1_9BACI Sensor protein EC=2.7.13.3 Length = 448 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 142/232 (61%), Gaps = 6/232 (2%) Query: 2 DEIDQLGSSFNWMIQQLEDSRKXXXXXXXXXXXXIANLSHDLRTPLTILRGHVTRLNKES 61 DEI QL +FN M+ +L +SRK IANLSHDLRTPLT +R H L KE+ Sbjct: 213 DEIGQLEMAFNQMVDELRESRKREEAEEQLRKELIANLSHDLRTPLTKIRAHAYTLEKEA 272 Query: 62 MSVEGQNSLTEMNHTITRVGDLMDDLLSYTLLTSGKHPFRPTSTDIVRLVRAAVAAWYDA 121 ++ + ++ + +++++ L+++L+SYTLL + K + PT TD+VRL R+ +AAWY A Sbjct: 273 LTPVARQAVNMIEQSVSKMDRLIENLISYTLLNAKKLKYEPTPTDVVRLARSFIAAWYPA 332 Query: 122 FEEKEIQLDVDLPAEKTFYWEADPKWITRVLDNLFQNILRHAAGGKYAHIGVDVDK---- 177 FE++ +DV L + +W DP W+ R+ DNLFQN++RHA GKY IG+ K Sbjct: 333 FEKEGFFIDVQLDDLEQKHWNVDPLWMERIFDNLFQNVIRHAKDGKY--IGLKTKKTDSY 390 Query: 178 EQIIIADKGPGMDHSSYGRGAGIGLSASNYMLNKMRLKADFTSDENGTRVAI 229 + +++ D+G G H S +GAGIGL+ + M+ KM L S E GT + I Sbjct: 391 DALVVLDRGKGFRHKSSEKGAGIGLAIVDLMVKKMELDWKIESSETGTIITI 442 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,341,358,278 Number of extensions: 53547716 Number of successful extensions: 155604 Number of sequences better than 1.0e-05: 3870 Number of HSP's gapped: 161603 Number of HSP's successfully gapped: 3870 Length of query: 232 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 101 Effective length of database: 1,826,543,238 Effective search space: 184480867038 Effective search space used: 184480867038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)