BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0007.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF87.1 B3KF87_9BACI ABC transporter related 419 e-116 C1WTH5.1 C1WTH5_9ACTO ABC-type multidrug transport system, ATPas... 295 2e-78 C1YH99.1 C1YH99_NOCDA ABC-type multidrug transport system, ATPas... 273 1e-71 B1VHN8.1 B1VHN8_CORU7 Putative ABC transport system, ATP-binding... 259 2e-67 C2GE61.1 C2GE61_9CORY ABC superfamily ATP binding cassette trans... 257 5e-67 >B3KF87.1 B3KF87_9BACI ABC transporter related Length = 237 Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust. Identities = 214/237 (90%), Positives = 223/237 (94%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 +L INNLVKHRG+QEILSGISFKARPG+VTGFLGPNGAGKSSTLRILLGLD ATSGSALI Sbjct: 1 MLEINNLVKHRGSQEILSGISFKARPGRVTGFLGPNGAGKSSTLRILLGLDRATSGSALI 60 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 NGKPF+EL NPLATVGAALDGSGAHR RTGRAHLRWIARAAGL SRVEEVLEI GLTNA Sbjct: 61 NGKPFSELDNPLATVGAALDGSGAHRSRTGRAHLRWIARAAGLSNSRVEEVLEIVGLTNA 120 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 A KRVG YSLGMGRRLGMAAALLGDP IL+LDEPVNGLDPEGIRWIRTFLRKRAESGNTV Sbjct: 121 ADKRVGKYSLGMGRRLGMAAALLGDPPILVLDEPVNGLDPEGIRWIRTFLRKRAESGNTV 180 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHSTLEEAFFALTSEIAGDVV 240 LLSSHL+GELAETVDDVVIIK GTIVADGTL+EVIGNHSTLE+AFFA TS+ AG VV Sbjct: 181 LLSSHLIGELAETVDDVVIIKQGTIVADGTLDEVIGNHSTLEKAFFARTSDHAGGVV 237 >C1WTH5.1 C1WTH5_9ACTO ABC-type multidrug transport system, ATPase component Length = 238 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 143/230 (62%), Positives = 179/230 (77%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 ++ I NL KH + +SF+A PG+VTGFLGPNGAGKSSTLRILLGLD A +GSA I Sbjct: 1 MIEIANLTKHHRGTTAVRDVSFQAVPGRVTGFLGPNGAGKSSTLRILLGLDRADAGSATI 60 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 G+ + +L +PL TVGA L+GSGAHR RT RAHL W+A + GLPR RV VLE GL +A Sbjct: 61 GGRAYRDLRSPLRTVGALLEGSGAHRSRTARAHLEWVALSNGLPRDRVRHVLEEVGLADA 120 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 AG RV +SLGMGRRLG+A ALLGDP++L+LDEPVNGLDPEGIRW+R +R A+ G TV Sbjct: 121 AGTRVRKFSLGMGRRLGIATALLGDPEVLVLDEPVNGLDPEGIRWLRQLVRTAADEGRTV 180 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHSTLEEAFFALTS 233 LLSSH M E++ T DD+V+I G++VA G+++EV+G+H+ LEEAFF LT+ Sbjct: 181 LLSSHFMAEMSSTADDLVVIAGGSVVAQGSIDEVVGDHAGLEEAFFTLTA 230 >C1YH99.1 C1YH99_NOCDA ABC-type multidrug transport system, ATPase component Length = 241 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 140/228 (61%), Positives = 167/228 (73%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 ++ I L + G + G++F ARPG+VTGFLGPNGAGKS+TLR LLGL+ G AL+ Sbjct: 1 MIEIRGLTRRFGAHTAVDGLTFTARPGQVTGFLGPNGAGKSTTLRTLLGLERPDGGRALV 60 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 NG P+ L P ATVGA LD GAH RT RAHL WIARA GLP SR EEVLE GL +A Sbjct: 61 NGVPYTSLRRPAATVGAQLDVGGAHPSRTARAHLGWIARANGLPASRAEEVLEWVGLAHA 120 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 A RV ++SLGMG+RL +AAALLGDP++L+LDEPVNGLDPEGIRWIR F R A+ G TV Sbjct: 121 ARSRVRTFSLGMGQRLNLAAALLGDPEVLVLDEPVNGLDPEGIRWIRGFTRGLADRGRTV 180 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHSTLEEAFFAL 231 LLSSHLMGE+A D +V+I G +VA+G E+ H +LEEAFFAL Sbjct: 181 LLSSHLMGEVARIADHLVVIDRGRLVAEGGPAELTAGHDSLEEAFFAL 228 >B1VHN8.1 B1VHN8_CORU7 Putative ABC transport system, ATP-binding protein Length = 377 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/219 (55%), Positives = 164/219 (74%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 ++ +N+L K G ++ + F+ +PG VTGFLGPNGAGKS+T+R+++GLD TSGSALI Sbjct: 42 MIKVNSLSKAYGGTTVVDNLDFEVKPGIVTGFLGPNGAGKSTTMRMIVGLDTPTSGSALI 101 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 +GK +AE PL VG LD H R+ HLRWIA A G R+RV+EVL+I GL+N Sbjct: 102 DGKRYAEFDRPLTKVGTLLDAKWVHPNRSAVNHLRWIAAANGFSRTRVDEVLDIVGLSNV 161 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 AG++ G +SLGMG+RLG+AAALLGDP++LILDEPVNGLDPEGIRW+R F+R+ A G TV Sbjct: 162 AGRKAGKFSLGMGQRLGLAAALLGDPEVLILDEPVNGLDPEGIRWVRDFVRQLAREGRTV 221 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHS 222 L+SSHL+ E+A+T D +++I G +VAD ++ E I + S Sbjct: 222 LISSHLLSEMAQTADHLIVIGKGKLVADQSVHEFIKSSS 260 >C2GE61.1 C2GE61_9CORY ABC superfamily ATP binding cassette transporter, ABC protein Length = 326 Score = 257 bits (657), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 120/221 (54%), Positives = 161/221 (72%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 ++ +N L K G+ + ++F +PG VTGFLGPNGAGKS+T+R++LGLD T+G A I Sbjct: 4 MIEVNGLTKVYGSTVAVDDLTFTVKPGVVTGFLGPNGAGKSTTMRMILGLDKPTNGYATI 63 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 NG+P+ +L NPL TVGA LD HR R+ AHL WIA + G+PRSRV EVL++ GL+ Sbjct: 64 NGQPYYKLKNPLRTVGALLDAKAVHRKRSAYAHLSWIADSNGIPRSRVNEVLDLVGLSEV 123 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 A + G +SLGMG+RLG+AAA+LGDP++L+ DEPVNGLDPEGIRW+R FLR A G TV Sbjct: 124 AKRPAGKFSLGMGQRLGLAAAMLGDPEVLLFDEPVNGLDPEGIRWVRGFLRNLAAEGRTV 183 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHSTL 224 L+SSHL+ E+++T D +V+I G +VAD T E + S + Sbjct: 184 LVSSHLLSEMSQTADRLVVIGQGKLVADTTTHEFLKRSSKV 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,496,971,523 Number of extensions: 64071390 Number of successful extensions: 452812 Number of sequences better than 1.0e-05: 70596 Number of HSP's gapped: 405595 Number of HSP's successfully gapped: 73896 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)