BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0578.0014.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D519.1 B1D519_9BACL ABC transporter related 274 4e-72 B8DBC6.1 B8DBC6_LISMH Macrolide export ATP-binding/permease prot... 259 8e-68 Q71WJ9.1 Q71WJ9_LISMF ABC transporter, ATP-binding protein 259 2e-67 C1KYZ5.1 C1KYZ5_LISMC Putative ABC transporter, ATP-binding protein 259 2e-67 A0ALR6.1 A0ALR6_LISW6 Complete genome EC=3.6.3.25 258 3e-67 >B1D519.1 B1D519_9BACL ABC transporter related Length = 225 Score = 274 bits (701), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 132/220 (60%), Positives = 169/220 (76%) Query: 1 VMKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEI 60 V++ +T ++ DG VL+ L+L V EGE VAV+GPSGSGKSTFLS AGALL PTSGE+ Sbjct: 6 VLQNITHSFEDGGTQRLVLDNLNLNVAEGELVAVMGPSGSGKSTFLSIAGALLEPTSGEV 65 Query: 61 FIDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERS 120 +DG+ + K EL+++RL K+GF+FQSA L+PYLKVEEQLL+VAK + +A R+ Sbjct: 66 LVDGQSVIGKAHQELSDMRLHKLGFIFQSANLIPYLKVEEQLLFVAKQGGMDKSKATVRA 125 Query: 121 SYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVR 180 LL++L + RR+ YPEKLSGG++QRVAIARA MN PA+L ADEPTASLD +RG +VVR Sbjct: 126 RELLQKLGLTHRRSAYPEKLSGGERQRVAIARALMNDPAVLLADEPTASLDASRGMDVVR 185 Query: 181 MIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVLVEQ 220 MIA E +GKAA+MVTHDER+L CDRV +L++G LVE Sbjct: 186 MIAGEAKEQGKAAIMVTHDERVLPLCDRVLYLEEGRLVEH 225 >B8DBC6.1 B8DBC6_LISMH Macrolide export ATP-binding/permease protein MacB EC=3.6.3.- Length = 223 Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 124/217 (57%), Positives = 164/217 (75%) Query: 1 VMKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEI 60 +MK +++ Y DG+ + VL + L V +GEFVA++GPSG+GKSTFLS AGALL+PT GEI Sbjct: 4 IMKNISKNYQDGEQVIEVLKNVSLEVAQGEFVAIVGPSGAGKSTFLSIAGALLSPTEGEI 63 Query: 61 FIDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERS 120 I G L++ ++ LT++RL K+GF+FQ A L+PYL V +QLL +A+L+ AKER+ Sbjct: 64 AIGGTTLNNMSEKALTKVRLDKVGFIFQGANLIPYLSVRDQLLVIAELSGEKGSAAKERA 123 Query: 121 SYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVR 180 LL+ L + R+N+YPE LSGG+KQRVAIARA MN P I+ ADEPTASLD NRG +VV+ Sbjct: 124 DKLLQELGLTARQNNYPESLSGGEKQRVAIARALMNDPDIILADEPTASLDANRGHKVVQ 183 Query: 181 MIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVL 217 MIADEV + KAA+MVTHDER+L+ DRV ++DG L Sbjct: 184 MIADEVKRKNKAAIMVTHDERVLDLVDRVIRIEDGYL 220 >Q71WJ9.1 Q71WJ9_LISMF ABC transporter, ATP-binding protein Length = 222 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/217 (57%), Positives = 163/217 (75%) Query: 1 VMKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEI 60 +MK +++ Y DG+ + VL + L V +GEFVA++GPSG+GKSTFLS AGALL+PT GEI Sbjct: 4 MMKNISKNYQDGEQVIEVLKNVSLEVAQGEFVAIVGPSGAGKSTFLSIAGALLSPTEGEI 63 Query: 61 FIDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERS 120 I G+ L+ ELT++RL K+GF+FQ A L+PYL V +QLL +A+L+ + AKE++ Sbjct: 64 AIGGKVLNDLTSKELTKVRLDKVGFIFQGANLIPYLNVRDQLLVIAELSGEKGRGAKEKA 123 Query: 121 SYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVR 180 LLK L + R N+YPE LSGG+KQRVAIARA MN P I+ ADEPTASLD NRG +VV+ Sbjct: 124 DELLKELGLTARENNYPESLSGGEKQRVAIARALMNDPDIILADEPTASLDANRGHKVVQ 183 Query: 181 MIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVL 217 MIADEV + KAA+MVTHDER+L+ DRV ++DG L Sbjct: 184 MIADEVKRKNKAAIMVTHDERVLDLVDRVIRIEDGYL 220 >C1KYZ5.1 C1KYZ5_LISMC Putative ABC transporter, ATP-binding protein Length = 222 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/217 (57%), Positives = 163/217 (75%) Query: 1 VMKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEI 60 +MK +++ Y DG+ + VL + L V +GEFVA++GPSG+GKSTFLS AGALL+PT GEI Sbjct: 4 MMKNISKNYQDGEQVIEVLKNVSLEVAQGEFVAIVGPSGAGKSTFLSIAGALLSPTEGEI 63 Query: 61 FIDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERS 120 I G+ L+ ELT++RL K+GF+FQ A L+PYL V +QLL +A+L+ + AKE++ Sbjct: 64 AIGGKVLNDLTSKELTKVRLDKVGFIFQGANLIPYLNVRDQLLVIAELSGEKGRGAKEKA 123 Query: 121 SYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVR 180 LLK L + R N+YPE LSGG+KQRVAIARA MN P I+ ADEPTASLD NRG +VV+ Sbjct: 124 DELLKELGLTARENNYPESLSGGEKQRVAIARALMNDPDIILADEPTASLDANRGHKVVQ 183 Query: 181 MIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVL 217 MIADEV + KAA+MVTHDER+L+ DRV ++DG L Sbjct: 184 MIADEVKRKNKAAIMVTHDERVLDLVDRVIRIEDGYL 220 >A0ALR6.1 A0ALR6_LISW6 Complete genome EC=3.6.3.25 Length = 222 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 124/217 (57%), Positives = 164/217 (75%) Query: 1 VMKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEI 60 +MK +++ Y DG+ + VL + L V +GEFVA++GPSG+GKSTFLS AGALL+PT GEI Sbjct: 4 MMKNISKNYQDGEQVIEVLKNVSLEVAQGEFVAIVGPSGAGKSTFLSIAGALLSPTEGEI 63 Query: 61 FIDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERS 120 I + L++ ELT++RL K+GF+FQ A L+PYL V +QLL +A+L+ K AK+++ Sbjct: 64 AIGEKTLNNLTSKELTKVRLEKVGFIFQGANLIPYLNVRDQLLVIAELSGEKGKGAKDKA 123 Query: 121 SYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVR 180 LLK L + R+N+YPE LSGG+KQRVAIARA MN P I+ ADEPTASLD NRG +VV+ Sbjct: 124 DELLKELGLTARQNNYPESLSGGEKQRVAIARALMNNPDIILADEPTASLDANRGHKVVQ 183 Query: 181 MIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVL 217 MIADEV + KAA+MVTHDER+L+ DRV ++DG L Sbjct: 184 MIADEVKRKNKAAIMVTHDERVLDLVDRVIRIEDGFL 220 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,277,123,702 Number of extensions: 49761669 Number of successful extensions: 458060 Number of sequences better than 1.0e-05: 91236 Number of HSP's gapped: 360346 Number of HSP's successfully gapped: 98110 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)