BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0578.0013.p (365 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D520.1 B1D520_9BACL Putative uncharacterized protein 319 2e-85 B3K8P7.1 B3K8P7_9BACI Putative uncharacterized protein 268 8e-70 Q71WJ8.1 Q71WJ8_LISMF ABC transporter, permease protein 267 1e-69 C1KYZ6.1 C1KYZ6_LISMC Conserved hypothetical protein 267 1e-69 Q4EF28.1 Q4EF28_LISMO ABC transporter, permease protein 267 1e-69 >B1D520.1 B1D520_9BACL Putative uncharacterized protein Length = 370 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 172/366 (46%), Positives = 232/366 (63%), Gaps = 4/366 (1%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 MR +K RY+LI IMLLVSFLVLFVTGLARGLAY N +++ENM A ++ ++KD++H F R Sbjct: 8 MRFAKVRYTLIATIMLLVSFLVLFVTGLARGLAYDNAASIENMDATHFVMEKDSNHRFTR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 SQ+ L A+SIAGE+NA PL V+M+T+T + K DVT AV+ G L P V +G+ Sbjct: 68 SQVGVEALERAKSIAGEKNAQPLGVRMTTVTLEGN--KLDVTLLAVEPEGWLTPPVVEGS 125 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 +T GSV+ DSKLK+SGV IGST+ DQASG+ + V GFV S+SH+P V+++ DW Sbjct: 126 ALTEAGVGSVLVDSKLKDSGVRIGSTLVDQASGMKWTVGGFVSRESFSHSPAVFLSEHDW 185 Query: 181 KAMRQ-GFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAE 239 + ++Q +SG + Y+ IA+K QA + E L + EV+T+ +A+++IPGY E Sbjct: 186 QQLQQVAAARSGMPTDTT-YSAIAVKASKQQAERLAEALPDNEVVTKSEAVSAIPGYKEE 244 Query: 240 QNSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXX 299 Q SL+MM TIQK+SQFGILKA+GT+ SYLA SV Q Sbjct: 245 QGSLMMMIVFLFVISAFVLAVFFYVITIQKSSQFGILKAIGTRASYLAGSVALQVLLLCL 304 Query: 300 XXXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEA 359 + LP MPFQL T+ LT F+ MSL GSL+SV +V+R++AL+A Sbjct: 305 GSLTISVLLVQALESVLPSGMPFQLPASTLALTSGAFMAMSLAGSLLSVWKVSRINALDA 364 Query: 360 IGRAGA 365 IGR A Sbjct: 365 IGRTAA 370 >B3K8P7.1 B3K8P7_9BACI Putative uncharacterized protein Length = 366 Score = 268 bits (684), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 143/363 (39%), Positives = 210/363 (57%), Gaps = 5/363 (1%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 ++H+K RY LI IM+L+++LVLFVTGLA+GL+ N S+++NM A+Y +Q+++DH R Sbjct: 8 LQHAKLRYLLIGFIMVLIAWLVLFVTGLAQGLSSDNASSIQNMKADYLVLQEESDHRINR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 S L + +S G A PL V M+T+T + + K D FFA+D+ MLAP+V +GT Sbjct: 68 SVLTGEIWNEVQSRPGGNPATPLGVHMNTLTKEGSSAKFDAAFFAIDVESMLAPRVVEGT 127 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 I+N V+AD LKE G +G I DQA+G TF +A F + S+SH PV+++N W Sbjct: 128 MISNTDADLVMADRSLKEDGYRLGDRIVDQATGATFTIAAFTEGQSFSHAPVIHMNFEGW 187 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQ 240 K + Q A YN IA Q + + +E+IT+++A+ IPG+ EQ Sbjct: 188 KTL-----QPNPAKPAPIYNAIAWNGTPEQKEALVRDVSGIEMITKEEALQGIPGFQEEQ 242 Query: 241 NSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXX 300 SL+MM TIQK +QFG+LKA+G YL S++ Q Sbjct: 243 GSLIMMIVFLFVIAAFVLAVFFYVMTIQKMNQFGVLKAIGAGTGYLVRSLIFQVLTLTIV 302 Query: 301 XXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAI 360 T+G++L L +PF L +LL +LF+ +SL+GSL+S+ RV ++DA+EAI Sbjct: 303 SLAISIGLTYGVSLLLSGIVPFSLTPSVVLLCSLLFLAVSLMGSLLSLYRVIKIDAIEAI 362 Query: 361 GRA 363 GRA Sbjct: 363 GRA 365 >Q71WJ8.1 Q71WJ8_LISMF ABC transporter, permease protein Length = 362 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 148/363 (40%), Positives = 212/363 (58%), Gaps = 9/363 (2%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 ++H+K RY LI +IM+L+++LVLFVTGLA GLA N +A+ + A YY +QKD+D+ R Sbjct: 8 LKHAKLRYILIGLIMVLIAWLVLFVTGLANGLANDNGAAISSNKATYYVLQKDSDNRLTR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 S L +E + + + L VQM TIT D K D+T+F +D G + P +T+GT Sbjct: 68 SNLTASETDSVAKQVKKSESTNLGVQMGTITPPNKDKKTDITYFGIDKTGFMKPAITEGT 127 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 E E VVAD LKESG +GS +KD A+G F + F +N++SH+PV+++ W Sbjct: 128 E--PEKTKEVVADISLKESGYKLGSKLKDSATGEEFTITAFTKNNTFSHSPVIFVGWDAW 185 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQ 240 K + Q+ Q AE YN +AL + + A ++ LG++E+ + K+ + IPGYS EQ Sbjct: 186 KLVH----QTNQAAEG-EYNAVALDVSESTAKNLS--LGSMELSSSKEVLQGIPGYSEEQ 238 Query: 241 NSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXX 300 SLLMM TIQK +QFGILKA+G + +YL S+V Q Sbjct: 239 GSLLMMIAFLFVIAAFVLAAFFYVITIQKINQFGILKAVGARTAYLGRSIVTQVVFLSVV 298 Query: 301 XXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAI 360 TFG+ LP SMPF L + LF+ ++++GS++S+ RVA+VDALEAI Sbjct: 299 SLLIGNGLTFGLAAILPASMPFTLSPVLAIGCSALFLVVAVIGSMLSLYRVAKVDALEAI 358 Query: 361 GRA 363 GRA Sbjct: 359 GRA 361 >C1KYZ6.1 C1KYZ6_LISMC Conserved hypothetical protein Length = 362 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 148/363 (40%), Positives = 212/363 (58%), Gaps = 9/363 (2%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 ++H+K RY LI +IM+L+++LVLFVTGLA GLA N +A+ + A YY +QKD+D+ R Sbjct: 8 LKHAKLRYILIGLIMVLIAWLVLFVTGLANGLANDNGAAISSNKATYYVLQKDSDNRLTR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 S L +E + + + L VQM TIT D K D+T+F +D G + P +T+GT Sbjct: 68 SNLTASETDSVAKQVKKSESTNLGVQMGTITPPNKDKKTDITYFGIDKTGFMKPAITEGT 127 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 E E VVAD LKESG +GS +KD A+G F + F +N++SH+PV+++ W Sbjct: 128 E--PEKTKEVVADISLKESGYKLGSKLKDSATGEEFTITAFTKNNTFSHSPVIFVGWDAW 185 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQ 240 K + Q+ Q AE YN +AL + + A ++ LG++E+ + K+ + IPGYS EQ Sbjct: 186 KLVH----QTNQAAEG-EYNAVALDVSESTAKNLS--LGSMELSSSKEVLQGIPGYSEEQ 238 Query: 241 NSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXX 300 SLLMM TIQK +QFGILKA+G + +YL S+V Q Sbjct: 239 GSLLMMIAFLFVIAAFVLAAFFYVITIQKINQFGILKAVGARTAYLGRSIVTQVVFLSVV 298 Query: 301 XXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAI 360 TFG+ LP SMPF L + LF+ ++++GS++S+ RVA+VDALEAI Sbjct: 299 SLLIGNGLTFGLAAILPASMPFTLSPVLAIGCSALFLVVAVIGSMLSLYRVAKVDALEAI 358 Query: 361 GRA 363 GRA Sbjct: 359 GRA 361 >Q4EF28.1 Q4EF28_LISMO ABC transporter, permease protein Length = 362 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 148/363 (40%), Positives = 212/363 (58%), Gaps = 9/363 (2%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 ++H+K RY LI +IM+L+++LVLFVTGLA GLA N +A+ + A YY +QKD+D+ R Sbjct: 8 LKHAKLRYILIGLIMVLIAWLVLFVTGLANGLANDNGAAISSNKATYYVLQKDSDNRLTR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 S L +E + + + L VQM TIT D K D+T+F +D G + P +T+GT Sbjct: 68 SNLTASETDSVAKQVKKSESTNLGVQMGTITPPNKDKKTDITYFGIDKTGFMKPAITEGT 127 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 E E VVAD LKESG +GS +KD A+G F + F +N++SH+PV+++ W Sbjct: 128 E--PEKTKEVVADISLKESGYKLGSKLKDSATGEEFTITAFTKNNTFSHSPVIFVGWDAW 185 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQ 240 K + Q+ Q AE YN +AL + + A ++ LG++E+ + K+ + IPGYS EQ Sbjct: 186 KLVH----QTNQAAEG-EYNAVALDVSESTAKNLS--LGSMELSSSKEVLQGIPGYSEEQ 238 Query: 241 NSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXX 300 SLLMM TIQK +QFGILKA+G + +YL S+V Q Sbjct: 239 GSLLMMIAFLFVIAAFVLAAFFYVITIQKINQFGILKAVGARTAYLGRSIVTQVVFLSVV 298 Query: 301 XXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAI 360 TFG+ LP SMPF L + LF+ ++++GS++S+ RVA+VDALEAI Sbjct: 299 SLLIGNGLTFGLAAILPASMPFTLSPVLAIGCSALFLVVAVIGSMLSLYRVAKVDALEAI 358 Query: 361 GRA 363 GRA Sbjct: 359 GRA 361 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.130 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,648,045,653 Number of extensions: 57152676 Number of successful extensions: 164471 Number of sequences better than 1.0e-05: 311 Number of HSP's gapped: 163534 Number of HSP's successfully gapped: 311 Length of query: 365 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 228 Effective length of database: 1,770,017,148 Effective search space: 403563909744 Effective search space used: 403563909744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)