BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0578.0012.p (458 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8P6.1 B3K8P6_9BACI Sensor protein EC=2.7.13.3 497 e-138 B1D521.1 B1D521_9BACL Sensor protein EC=2.7.13.3 471 e-131 B1D8G8.1 B1D8G8_9BACL Sensor protein EC=2.7.13.3 470 e-130 Q927R1.1 Q927R1_LISIN Sensor protein EC=2.7.13.3 463 e-128 A0ALR8.1 A0ALR8_LISW6 Sensor protein EC=2.7.13.3 459 e-127 >B3K8P6.1 B3K8P6_9BACI Sensor protein EC=2.7.13.3 Length = 459 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 234/457 (51%), Positives = 324/457 (70%), Gaps = 1/457 (0%) Query: 1 MKSLYVRMSLLFCSVIVISSVLGFLISNAYYQAAIKPQNDAKLTKMAIGLQSFIEDHPDT 60 MK+LY R+ L +++VISS++ F++SN YYQ +KP ND K+T MA + F + HP+T Sbjct: 1 MKTLYSRIVLTTIAIMVISSLIAFVLSNLYYQYNLKPFNDQKVTTMAKDIGDFYDSHPET 60 Query: 61 -VEEYLLSTASLGYKMYLSNDQGDERFYGLPFRKNDLKEGELQKVLAGSIYHGVADFPSR 119 + +YL LGY+ YL NDQG E FYG FR+ DL +++VL G +YHG+A+FPS Sbjct: 61 DIHDYLHHIGQLGYQFYLVNDQGKEWFYGGMFREQDLSPETVRQVLNGKVYHGIAEFPSE 120 Query: 120 MFITGFFDNQLSNTIGVPIHIHGQPYALFMRPDAQVQFGELRLFFAVLIAGTILFSLWFV 179 +FITGFFDN LSN+IG+PI + G P+ALF+RPD VQFGE+R+FF++++ IL S+ V Sbjct: 121 LFITGFFDNVLSNSIGIPIQVEGSPHALFLRPDITVQFGEMRIFFSIIMVIAILLSILLV 180 Query: 180 LITVFHVVRPITRLTEATKKISKGRYDIKLYTARRDEIGQLASHFMSMSRELERTNRARQ 239 I ++V+PI +LTEAT+ +++G+YDIKL RRDE+GQLA HF M++ L + + RQ Sbjct: 181 GIITRYIVKPIVKLTEATQSVAQGQYDIKLNVTRRDELGQLADHFSQMAKGLAQLEQMRQ 240 Query: 240 EFVANVSHEIESPLTSIQGFAHALKDGTLPEQQRMEYLSIIDQESRRLSVLSKQLLTLSS 299 EFV+NVSHEI+SPL SIQGF+ L+ L E+Q+ YLSII+ ESRR+S LSKQLL L+S Sbjct: 241 EFVSNVSHEIQSPLASIQGFSQTLQTKRLSEEQQQHYLSIIEAESRRMSQLSKQLLMLAS 300 Query: 300 LDYDENALDRKSIELRAQLRQVLQIMEWRLTEKELAVRLQVADITLQGDANLLYQVWMNL 359 LD +EN LD+ + ++ Q++QVL EW K+L + + + + GD LL+QVW NL Sbjct: 301 LDKEENILDKSTFDVAEQIKQVLFHTEWNWRSKDLTIDMSLPPTYVYGDQQLLHQVWTNL 360 Query: 360 LSNAIKYTQTGGTIAISAKAENQHCMVTVTDNGEGIPADQLPMIFDRFYKVDRARTRDSN 419 ++N+IK+T G I++ N C + ++D G GIP + LP IF+RFY+VD AR R Sbjct: 361 ITNSIKFTAPEGAISLRVIEHNTQCRIEISDTGIGIPQEHLPHIFNRFYRVDEARDRSEG 420 Query: 420 SSGLGLSIVRKIIEVHGGTVEATSTVGEGTTFTVTLP 456 SSGLGLSI +KI+E+HGG +E TS G+GTTFTV LP Sbjct: 421 SSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVILP 457 >B1D521.1 B1D521_9BACL Sensor protein EC=2.7.13.3 Length = 459 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 243/457 (53%), Positives = 335/457 (73%), Gaps = 1/457 (0%) Query: 1 MKSLYVRMSLLFCSVIVISSVLGFLISNAYYQAAIKPQNDAKLTKMAIGLQSFIEDHPDT 60 MKSLY R+ L+ +VI++SS++GFL+SN YY +K ND KL +A ++SFIE P Sbjct: 1 MKSLYFRVFLITAAVILVSSIIGFLVSNLYYHMKLKSFNDEKLVGIAQQMESFIETEPAG 60 Query: 61 VEEYLLSTASLGYKMYLSNDQGDERFYGLPFRKNDLKEGELQKVLAGSIYHGVADFPSRM 120 +E YL + ASLGY++Y+++ QG+ FYG FR+ DL + + VL G +YHGVA FP++ Sbjct: 61 MERYLQNAASLGYEIYVTDGQGETHFYGRSFREQDLDQQAVALVLGGEVYHGVAQFPNKP 120 Query: 121 FITGFFDNQLSNTIGVPIHIHGQPYALFMRPDAQVQFGELRLFFAVLIAGTILFSLWFVL 180 FITGFFDN+LSNT+GV + G+ YALFMRPD +QFGELR FFA++ T++ S+ L Sbjct: 121 FITGFFDNRLSNTVGVLVQSSGKSYALFMRPDVLLQFGELRTFFALVGLYTVIISILLFL 180 Query: 181 ITVFHVVRPITRLTEATKKISKGRYDIKLYTARRDEIGQLASHFMSMSRELERTNRARQE 240 I+ ++V+PITRL+EATK+I++G Y+++L T RRDEIGQLA HFM+MS+ELER ++ RQ+ Sbjct: 181 ISTRYLVKPITRLSEATKRIAQGNYNLRLPTRRRDEIGQLAEHFMTMSKELERVDQTRQQ 240 Query: 241 FVANVSHEIESPLTSIQGFAHALKDGTLPEQQRMEYLSIIDQESRRLSVLSKQLLTLSSL 300 FV+NVSHEI+SPLTSIQGFA L++ LP ++R Y II+ ESR LS+LSKQLL LSSL Sbjct: 241 FVSNVSHEIQSPLTSIQGFAAVLREQELPSEERKHYADIIEAESRHLSILSKQLLLLSSL 300 Query: 301 DYDENALDRKSIELRAQLRQVLQIMEWRLTEKELAVRLQVAD-ITLQGDANLLYQVWMNL 359 + E AL++K L +RQ +Q+++W+L EK+L ++L V D I + GD LL QVWMNL Sbjct: 301 EQGEEALNKKHFSLYKHIRQAVQVLQWQLEEKDLLLKLSVPDSIAIYGDEVLLQQVWMNL 360 Query: 360 LSNAIKYTQTGGTIAISAKAENQHCMVTVTDNGEGIPADQLPMIFDRFYKVDRARTRDSN 419 L NAI Y G +I + A+ ++ V+D GEGIP + +P +FDRFY+VDRAR R S Sbjct: 361 LGNAINYIPPGRSIEVLAEKTLSDIVIVVSDTGEGIPPEHIPFLFDRFYRVDRARERTSG 420 Query: 420 SSGLGLSIVRKIIEVHGGTVEATSTVGEGTTFTVTLP 456 +GLGL+IV+KI+++HGG +E S+ G GT TV+LP Sbjct: 421 RTGLGLAIVKKIVQLHGGRIEVESSPGAGTRITVSLP 457 >B1D8G8.1 B1D8G8_9BACL Sensor protein EC=2.7.13.3 Length = 459 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 230/458 (50%), Positives = 330/458 (72%), Gaps = 2/458 (0%) Query: 1 MKSLYVRMSLLFCSVIVISSVLGFLISNAYYQAAIKPQNDAKLTKMAIGLQSFIEDHPDT 60 M+SLYVR+ ++ I +SS+LG+ + AYY A KP DAKL A L+ +I HP Sbjct: 1 MRSLYVRVFIVIVYSIALSSLLGYYAATAYYHWAQKPHADAKLMGTAEQLRDYIRLHPGG 60 Query: 61 VEEYLLSTASLGYKMYLSNDQGDERFYGLPFRKNDLKEGELQKVLAGSIYHGVADFPSRM 120 + +YL S+A LGY++Y+ + G+ ++G PF K DLKE + ++VL G YHGVA++P++ Sbjct: 61 MGDYLNSSARLGYQIYVYDASGNGLYFGRPFSKLDLKEADKKRVLNGGNYHGVAEYPNKA 120 Query: 121 FITGFFDNQLSNTIGVPIHIHGQPYALFMRPDAQVQFGELRLFFAVLIAGTILFSLWFVL 180 F TG+FDN LSNT+GV + + YALF+R D++V F ELR+FF V+ T+L S + L Sbjct: 121 FETGYFDNALSNTVGVSVRADAERYALFLRHDSRVHFDELRMFFLVMFILTVLLSFPYFL 180 Query: 181 ITVFHVVRPITRLTEATKKISKGRYDIKLYTARRDEIGQLASHFMSMSRELERTNRARQE 240 ++ ++V+PI RLTEATKK+++G+Y+I++ R+DEIGQLA HF +MS ELER++R+++E Sbjct: 181 LSARYLVQPIIRLTEATKKVAQGQYNIQIPVKRKDEIGQLARHFRAMSNELERSDRSKKE 240 Query: 241 FVANVSHEIESPLTSIQGFAHALKDGTLPEQQRM-EYLSIIDQESRRLSVLSKQLLTLSS 299 FVANVSHEI+SPL SIQG+A +L + + +R+ Y SII QE+R L+ LS+QLL LS+ Sbjct: 241 FVANVSHEIQSPLASIQGYADSLVHQDINDAERIRHYASIIGQETRHLAALSRQLLLLST 300 Query: 300 LDYDENALDRKSIELRAQLRQVLQIMEWRLTEKELAVRLQV-ADITLQGDANLLYQVWMN 358 LD+ + ++ L+ QLRQ +Q++EW+LTEKE+A+R+ V + + GD LL QVW N Sbjct: 301 LDHSGYSPGKQPFLLKPQLRQAVQLLEWQLTEKEIAIRVAVPGKLRIYGDEVLLMQVWTN 360 Query: 359 LLSNAIKYTQTGGTIAISAKAENQHCMVTVTDNGEGIPADQLPMIFDRFYKVDRARTRDS 418 LLSNA+K+ G +I +SA+ E+ C+VTV D G+GIP DQLP I+DRFY+ D AR R S Sbjct: 361 LLSNAVKHIPGGRSIHVSAEQEDGACIVTVRDTGDGIPEDQLPYIYDRFYRGDSARDRRS 420 Query: 419 NSSGLGLSIVRKIIEVHGGTVEATSTVGEGTTFTVTLP 456 S+GLGLSIV++I+++HGGT+EA S GTTF V +P Sbjct: 421 GSTGLGLSIVQRIVQLHGGTIEADSRFERGTTFRVRIP 458 >Q927R1.1 Q927R1_LISIN Sensor protein EC=2.7.13.3 Length = 459 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/457 (49%), Positives = 313/457 (68%), Gaps = 1/457 (0%) Query: 1 MKSLYVRMSLLFCSVIVISSVLGFLISNAYYQAAIKPQNDAKLTKMAIGLQSFIE-DHPD 59 MKSLY R+ + VI+ SS+LGF +N YYQ +KP ND K K+A +Q F + + Sbjct: 1 MKSLYSRIVVTMLVVILSSSLLGFFFANIYYQIKLKPFNDEKTAKIAEEVQQFYQSNRAI 60 Query: 60 TVEEYLLSTASLGYKMYLSNDQGDERFYGLPFRKNDLKEGELQKVLAGSIYHGVADFPSR 119 +++EYL + LGY++YL++ + ++G FRK DL +Q+VLAG YHG+ F + Sbjct: 61 SLKEYLENVGELGYELYLTDGKDQSSYFGGAFRKKDLPNKTVQQVLAGETYHGIDTFDTG 120 Query: 120 MFITGFFDNQLSNTIGVPIHIHGQPYALFMRPDAQVQFGELRLFFAVLIAGTILFSLWFV 179 +FITGFFDN + NTIGVP+ G+ ALF+R D + QFGELR+FFA+++ T + S+ FV Sbjct: 121 IFITGFFDNDVRNTIGVPVKADGEQLALFIRQDPEQQFGELRIFFAMILVFTSIISILFV 180 Query: 180 LITVFHVVRPITRLTEATKKISKGRYDIKLYTARRDEIGQLASHFMSMSRELERTNRARQ 239 LI+ ++V+P+ +LT ATKKI +G YD+ L R+DEIGQLA F M+ ELE++ ARQ Sbjct: 181 LISGRYIVKPVVKLTNATKKIRRGNYDVALEVRRKDEIGQLADSFAKMASELEKSEAARQ 240 Query: 240 EFVANVSHEIESPLTSIQGFAHALKDGTLPEQQRMEYLSIIDQESRRLSVLSKQLLTLSS 299 EFVANVSHE++SPLTS+QGFA L GTL E+++ EYL+++ +E+ RLS L+KQLLTL+S Sbjct: 241 EFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQKEYLTVLSEETTRLSSLTKQLLTLAS 300 Query: 300 LDYDENALDRKSIELRAQLRQVLQIMEWRLTEKELAVRLQVADITLQGDANLLYQVWMNL 359 LD + ++ ++L Q RQ++Q+ EW EKEL + L++ADI GDA LLYQVW NL Sbjct: 301 LDQESELRKKEPVQLAEQWRQLIQMTEWSWREKELTINLELADINYSGDAELLYQVWSNL 360 Query: 360 LSNAIKYTQTGGTIAISAKAENQHCMVTVTDNGEGIPADQLPMIFDRFYKVDRARTRDSN 419 L+NAIKYT GG I + E + V V ++G GI + + IFDRFYK ++RTR+ Sbjct: 361 LNNAIKYTPLGGNIQVRLYEETTNVFVEVWNSGAGISKEDMAKIFDRFYKASQSRTREEG 420 Query: 420 SSGLGLSIVRKIIEVHGGTVEATSTVGEGTTFTVTLP 456 SSGLGLSI +KII +H G + S +GTTF V LP Sbjct: 421 SSGLGLSICKKIITLHHGEITVESNTDKGTTFKVKLP 457 >A0ALR8.1 A0ALR8_LISW6 Sensor protein EC=2.7.13.3 Length = 459 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/457 (49%), Positives = 312/457 (68%), Gaps = 1/457 (0%) Query: 1 MKSLYVRMSLLFCSVIVISSVLGFLISNAYYQAAIKPQNDAKLTKMAIGLQSFIEDHPD- 59 MKSLY R+ VIV SS+LGF +N YYQ +KP ND K K+A +Q F + +P Sbjct: 1 MKSLYSRIVATMLVVIVSSSLLGFFFANIYYQIKLKPFNDEKTAKIAKEVQQFHQSNPAV 60 Query: 60 TVEEYLLSTASLGYKMYLSNDQGDERFYGLPFRKNDLKEGELQKVLAGSIYHGVADFPSR 119 ++ EYL + LGY++YL++ ++G FRK DL + +Q+VL G YHG+ +F + Sbjct: 61 SLNEYLENVGELGYELYLTDGVEKSTYFGGEFRKKDLPDKTIQQVLDGETYHGIDEFDTG 120 Query: 120 MFITGFFDNQLSNTIGVPIHIHGQPYALFMRPDAQVQFGELRLFFAVLIAGTILFSLWFV 179 +FITGFFDN + NTIGVP+ + G ALF+R D + QFGELR+FFA+++ T + S+ FV Sbjct: 121 IFITGFFDNDVRNTIGVPVKVEGDQLALFIRQDPEQQFGELRIFFAMILIFTSIISILFV 180 Query: 180 LITVFHVVRPITRLTEATKKISKGRYDIKLYTARRDEIGQLASHFMSMSRELERTNRARQ 239 LI+ ++V P+ +LT ATKKI KG YD+ L R+DEIGQLA F M+ ELE++ ARQ Sbjct: 181 LISGRYIVNPVVKLTNATKKIRKGNYDVALEVRRKDEIGQLADSFAKMASELEKSETARQ 240 Query: 240 EFVANVSHEIESPLTSIQGFAHALKDGTLPEQQRMEYLSIIDQESRRLSVLSKQLLTLSS 299 EFVANVSHE++SPLTS+QGFA L GTL ++++ EYL+++ +E+ RLS L+KQLLTL+S Sbjct: 241 EFVANVSHELQSPLTSMQGFARLLSSGTLTDKEQAEYLTVLSEETARLSSLTKQLLTLAS 300 Query: 300 LDYDENALDRKSIELRAQLRQVLQIMEWRLTEKELAVRLQVADITLQGDANLLYQVWMNL 359 LD + ++ ++L Q RQ++Q+ EW EKEL + L++AD+ GDA LLYQVW NL Sbjct: 301 LDQESELRKKEPVQLAEQWRQLIQMTEWSWREKELTINLELADVNYTGDAELLYQVWSNL 360 Query: 360 LSNAIKYTQTGGTIAISAKAENQHCMVTVTDNGEGIPADQLPMIFDRFYKVDRARTRDSN 419 L+NAIK+T G I + + + V V DNG GI + IF+RFYK +++RTR+ Sbjct: 361 LTNAIKFTPQDGNIQVRLYEKATNVFVEVQDNGVGISKTDMAKIFERFYKSNQSRTREEG 420 Query: 420 SSGLGLSIVRKIIEVHGGTVEATSTVGEGTTFTVTLP 456 SSGLGLSI +KII +H G + ST +GTTFTV LP Sbjct: 421 SSGLGLSICQKIIALHHGEIIVKSTPEKGTTFTVKLP 457 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,507,436,714 Number of extensions: 101011809 Number of successful extensions: 403334 Number of sequences better than 1.0e-05: 33366 Number of HSP's gapped: 347308 Number of HSP's successfully gapped: 33523 Length of query: 458 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 319 Effective length of database: 1,751,175,118 Effective search space: 558624862642 Effective search space used: 558624862642 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)