BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0578.0011.p (225 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D522.1 B1D522_9BACL Two component transcriptional regulator, w... 336 9e-91 B1D8G9.1 B1D8G9_9BACL Two component transcriptional regulator, w... 328 3e-88 B3K8P5.1 B3K8P5_9BACI Response regulator receiver 292 2e-77 C3BLT7.1 C3BLT7_9BACI DNA-binding response regulator 290 1e-76 C3B539.1 C3B539_BACMY DNA-binding response regulator 290 1e-76 >B1D522.1 B1D522_9BACL Two component transcriptional regulator, winged helix family Length = 225 Score = 336 bits (861), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 158/222 (71%), Positives = 190/222 (85%) Query: 1 MKKILVADDDVNIRTLLRHVLTREGYAVLEAADGREAMGLMKGSTVDLAVVDVMMPYIDG 60 M +L+ADDD NIR L+R V+TREGY V EA DG EA+ +M+ + ++LA++DVMMP IDG Sbjct: 1 MYHLLLADDDPNIRALVRFVMTREGYQVYEAQDGAEAVEVMQRAPINLAIIDVMMPRIDG 60 Query: 61 LELCQHIRETYDIPVILLTARQQLSDKEQGYLRGTDDYVTKPFEPDELLFRIKALFRRYS 120 ELC++IRE YDIP+I+LTA+ QLSDKEQGYLRGTDDYVTKPFEP+ELLFR+KALFRRY+ Sbjct: 61 FELCEYIRERYDIPIIMLTAKDQLSDKEQGYLRGTDDYVTKPFEPEELLFRVKALFRRYN 120 Query: 121 VAASDKIRLNSLVIDRKNYEISDGNDVLLLPVKEFELLAQLAEYPGRLFSRSELIELVWG 180 + D IR+N + IDRKN E++DG VLLLP+KEFELLAQLA+YPGRLFSR ELI LVW Sbjct: 121 QVSHDLIRMNRITIDRKNVEVTDGQSVLLLPMKEFELLAQLAQYPGRLFSREELIRLVWA 180 Query: 181 ADYEGDERTVDVHIKRLRDRFSEYKNDFTIRTVRGIGYKVET 222 AD+EGD+RTVDVHIKRLR RF++Y DFTI+TVRGIGYKVE Sbjct: 181 ADFEGDDRTVDVHIKRLRQRFADYAEDFTIQTVRGIGYKVEV 222 >B1D8G9.1 B1D8G9_9BACL Two component transcriptional regulator, winged helix family Length = 225 Score = 328 bits (840), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 155/224 (69%), Positives = 186/224 (83%) Query: 1 MKKILVADDDVNIRTLLRHVLTREGYAVLEAADGREAMGLMKGSTVDLAVVDVMMPYIDG 60 MK++L+ DDD N RTLL H LTREGY VLEA +G EA+ +++ VDLA++DVM+P +DG Sbjct: 1 MKQLLITDDDSNTRTLLGHYLTREGYRVLEAQNGLEAIAVLEKQPVDLAILDVMLPIVDG 60 Query: 61 LELCQHIRETYDIPVILLTARQQLSDKEQGYLRGTDDYVTKPFEPDELLFRIKALFRRYS 120 L LC+ R+ YDIP+ILLTAR QLSDKEQGYL GTDDYVTKPFE E+L+R+KALFRRYS Sbjct: 61 LTLCEFTRKNYDIPIILLTARDQLSDKEQGYLSGTDDYVTKPFELPEILYRVKALFRRYS 120 Query: 121 VAASDKIRLNSLVIDRKNYEISDGNDVLLLPVKEFELLAQLAEYPGRLFSRSELIELVWG 180 +A+SDKIRLN L+IDRKNYEI DG +V +LP+KEFELLAQLAEYPGR+FSR ELI ++WG Sbjct: 121 LASSDKIRLNQLIIDRKNYEIVDGEEVQMLPLKEFELLAQLAEYPGRVFSRDELIRIIWG 180 Query: 181 ADYEGDERTVDVHIKRLRDRFSEYKNDFTIRTVRGIGYKVETVS 224 DY GDERT+DVHIKRLR RF E + F I T+RGIGYK+E S Sbjct: 181 TDYNGDERTIDVHIKRLRKRFPETERGFVIHTIRGIGYKLEVPS 224 >B3K8P5.1 B3K8P5_9BACI Response regulator receiver Length = 225 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 142/221 (64%), Positives = 171/221 (77%) Query: 1 MKKILVADDDVNIRTLLRHVLTREGYAVLEAADGREAMGLMKGSTVDLAVVDVMMPYIDG 60 M IL+ADDD +IR LL + L EGY V AADG EA L+ V LAVVDVMMP DG Sbjct: 1 MIHILIADDDAHIRELLLYHLQTEGYTVFTAADGEEASALLAEEQVHLAVVDVMMPNKDG 60 Query: 61 LELCQHIRETYDIPVILLTARQQLSDKEQGYLRGTDDYVTKPFEPDELLFRIKALFRRYS 120 +LC+ IR YD+PVILLTA+ QL DKE+G+ GTDDY+TKPFEP ELLFRIKAL RRY Sbjct: 61 YQLCEEIRRYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQ 120 Query: 121 VAASDKIRLNSLVIDRKNYEISDGNDVLLLPVKEFELLAQLAEYPGRLFSRSELIELVWG 180 + ++DKIRLN IDRK+YE+ VL+LP+KEFELL+QLA YP R FSR ELI+L+WG Sbjct: 121 MVSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWG 180 Query: 181 ADYEGDERTVDVHIKRLRDRFSEYKNDFTIRTVRGIGYKVE 221 D++GD+RTVDVHIKRLR+RF++ DF IRTVRG+GYK+E Sbjct: 181 TDFDGDDRTVDVHIKRLRERFADRSGDFRIRTVRGVGYKLE 221 >C3BLT7.1 C3BLT7_9BACI DNA-binding response regulator Length = 223 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 136/221 (61%), Positives = 175/221 (79%) Query: 1 MKKILVADDDVNIRTLLRHVLTREGYAVLEAADGREAMGLMKGSTVDLAVVDVMMPYIDG 60 M IL+ADDD +IR LL + L +EGY V EA DG+ A +++ + LAVVD+MMP+IDG Sbjct: 1 MIHILLADDDGHIRELLHYHLQKEGYKVFEAEDGKVAQSILEKENIHLAVVDIMMPFIDG 60 Query: 61 LELCQHIRETYDIPVILLTARQQLSDKEQGYLRGTDDYVTKPFEPDELLFRIKALFRRYS 120 LC+ IR+ +DIPVILLTA+ QL DKE+G++ GTDDY+ KPFEP E++FR+KAL RRY Sbjct: 61 YTLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 VAASDKIRLNSLVIDRKNYEISDGNDVLLLPVKEFELLAQLAEYPGRLFSRSELIELVWG 180 + ++D I L+ IDRK++E+ + +LLP+KEFELL+QLA YPGR FSR ELIELVWG Sbjct: 121 MLSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWG 180 Query: 181 ADYEGDERTVDVHIKRLRDRFSEYKNDFTIRTVRGIGYKVE 221 D+EGDERTVDVHIKRLRDRFS+ +DF I+TVRG+GYK+E Sbjct: 181 MDFEGDERTVDVHIKRLRDRFSKRTDDFQIKTVRGLGYKLE 221 >C3B539.1 C3B539_BACMY DNA-binding response regulator Length = 223 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 136/221 (61%), Positives = 175/221 (79%) Query: 1 MKKILVADDDVNIRTLLRHVLTREGYAVLEAADGREAMGLMKGSTVDLAVVDVMMPYIDG 60 M IL+ADDD +IR LL + L +EGY V EA DG+ A +++ + LAVVD+MMP+IDG Sbjct: 1 MIHILLADDDGHIRELLHYHLQKEGYKVFEAEDGKVAQSILEKENIHLAVVDIMMPFIDG 60 Query: 61 LELCQHIRETYDIPVILLTARQQLSDKEQGYLRGTDDYVTKPFEPDELLFRIKALFRRYS 120 LC+ IR+ +DIPVILLTA+ QL DKE+G++ GTDDY+ KPFEP E++FR+KAL RRY Sbjct: 61 YTLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 VAASDKIRLNSLVIDRKNYEISDGNDVLLLPVKEFELLAQLAEYPGRLFSRSELIELVWG 180 + ++D I L+ IDRK++E+ + +LLP+KEFELL+QLA YPGR FSR ELIELVWG Sbjct: 121 MLSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWG 180 Query: 181 ADYEGDERTVDVHIKRLRDRFSEYKNDFTIRTVRGIGYKVE 221 D+EGDERTVDVHIKRLRDRFS+ +DF I+TVRG+GYK+E Sbjct: 181 MDFEGDERTVDVHIKRLRDRFSKRTDDFQIKTVRGLGYKLE 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.140 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,283,460,723 Number of extensions: 51401982 Number of successful extensions: 226721 Number of sequences better than 1.0e-05: 31898 Number of HSP's gapped: 198213 Number of HSP's successfully gapped: 32134 Length of query: 225 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 94 Effective length of database: 1,826,543,238 Effective search space: 171695064372 Effective search space used: 171695064372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)