BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0578.0009.p
         (79 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q8KNR7.1 Q8KNR7_BACTI Putative DNA binding protein                     68   3e-10
C3IU78.1 C3IU78_BACTU DNA binding protein                              68   3e-10
Q8KNV9.1 Q8KNV9_BACTI Putative DNA binding protein                     67   4e-10
C3GCL7.1 C3GCL7_BACTU DNA binding protein                              66   9e-10

>Q8KNR7.1 Q8KNR7_BACTI Putative DNA binding protein
          Length = 86

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 2  KQVQFVCDHFGWNYIMGMEFTEDLSDLEKAIKEKLTPDNIYEPCPCGSGNKFKFCCASTM 61
          +++  +CD +   YI+ +E  EDL+DL+KA+K +  P +IY+ C C SG K+KFCC S  
Sbjct: 22 EKIAAICDEYDLYYIISLELNEDLTDLKKAMKGRTRPMDIYDTCACNSGKKYKFCCMS-- 79

Query: 62 KNFDLDV 68
          K  +LD+
Sbjct: 80 KEIELDI 86


>C3IU78.1 C3IU78_BACTU DNA binding protein
          Length = 86

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 2  KQVQFVCDHFGWNYIMGMEFTEDLSDLEKAIKEKLTPDNIYEPCPCGSGNKFKFCCASTM 61
          +++  +CD +   YI+ +E  EDL+DL+KA+K +  P +IY+ C C SG K+KFCC S  
Sbjct: 22 EKIAAICDEYDLYYIISLELNEDLTDLKKAMKGRTRPMDIYDTCACNSGKKYKFCCMS-- 79

Query: 62 KNFDLDV 68
          K  +LD+
Sbjct: 80 KEIELDI 86


>Q8KNV9.1 Q8KNV9_BACTI Putative DNA binding protein
          Length = 86

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 2  KQVQFVCDHFGWNYIMGMEFTEDLSDLEKAIKEKLTPDNIYEPCPCGSGNKFKFCCASTM 61
          +++  +CD +   YI+ +E  EDL+DL+KA+K +  P +IY+ C C SG K+KFCC S  
Sbjct: 22 EKIAAICDDYDLYYIISLELNEDLTDLKKAMKGRTRPMDIYDTCACNSGKKYKFCCMS-- 79

Query: 62 KNFDLDV 68
          K  +LD+
Sbjct: 80 KEIELDI 86


>C3GCL7.1 C3GCL7_BACTU DNA binding protein
          Length = 86

 Score = 66.2 bits (160), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 2  KQVQFVCDHFGWNYIMGMEFTEDLSDLEKAIKEKLTPDNIYEPCPCGSGNKFKFCCASTM 61
          +++  +CD + + YI+ +E  EDL+DL+KAIK    P +IY+ C C SG K+KFCC +  
Sbjct: 22 EKIATICDEYDFYYIISLELNEDLTDLKKAIKGHTHPMDIYDTCACNSGKKYKFCCMN-- 79

Query: 62 KNFDLDV 68
          K  +LD+
Sbjct: 80 KEIELDI 86


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.139    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 505,218,966
Number of extensions: 17864939
Number of successful extensions: 34625
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 34643
Number of HSP's successfully gapped: 4
Length of query: 79
Length of database: 3,060,696,203
Length adjustment: 50
Effective length of query: 29
Effective length of database: 2,589,645,453
Effective search space: 75099718137
Effective search space used: 75099718137
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)