BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0576.0008.p (229 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q928K2.1 Q928K2_LISIN Lin2530 protein 254 5e-66 C2U6F4.1 C2U6F4_BACCE Putative uncharacterized protein 253 9e-66 B8DDC2.1 B8DDC2_LISMH Transcription antiterminator LicT 253 1e-65 C3BUY0.1 C3BUY0_9BACI Putative uncharacterized protein 253 1e-65 Q71WZ2.1 Q71WZ2_LISMF Transcription antiterminator LicT 253 1e-65 >Q928K2.1 Q928K2_LISIN Lin2530 protein Length = 285 Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 119/213 (55%), Positives = 156/213 (73%) Query: 17 IPPKHLELTDQIIRYAAKDLGTSFSNNIYLALTDHISYAITRSTQGLNLKNALLWEIQKF 76 IP KHL + D +++YA + L T S+NIYL LTDHI++A++R QG+NLKNALLWEI++F Sbjct: 66 IPLKHLRIADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLWEIKRF 125 Query: 77 YPKEYHTATHALHLIEKETGLKLPVDEAAFIAMHFVNGQQDGQEMEQTLLVTQMVQGILN 136 Y EY AL IEKE G++L DEA FIA+H VN +QDGQ+M T+ +TQ+VQ IL+ Sbjct: 126 YHAEYLVGMKALDFIEKEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIVQDILS 185 Query: 137 IVTLHYGIELDENSLNYSRFLTHLKYFSYRAMRHESIPSEDDELYKQVVLKYPEAFACSE 196 IVT HYG+ LDE SLNY+RF+THL+YF+ R +R E + S DD LY+QV +KYPEAF C++ Sbjct: 186 IVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEAFNCTK 245 Query: 197 KVRAYLREEYQVETTEGEMVYFMLHIRRVTSRD 229 K+ AYL + E T E VY +HI RVT R+ Sbjct: 246 KIDAYLINTHHTELTRDERVYLAIHIYRVTERN 278 >C2U6F4.1 C2U6F4_BACCE Putative uncharacterized protein Length = 282 Score = 253 bits (646), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 116/213 (54%), Positives = 156/213 (73%) Query: 17 IPPKHLELTDQIIRYAAKDLGTSFSNNIYLALTDHISYAITRSTQGLNLKNALLWEIQKF 76 IP +HL+L+D+II YA L +NIYL LTDHIS++I+R QG LKNALLWE++KF Sbjct: 66 IPSEHLDLSDEIITYAKSKLSGKIGDNIYLTLTDHISFSISRFQQGFILKNALLWEVKKF 125 Query: 77 YPKEYHTATHALHLIEKETGLKLPVDEAAFIAMHFVNGQQDGQEMEQTLLVTQMVQGILN 136 Y EY A HAL +IE++TG KLP DEA IA+H +N QQ+ +ME T+ +T+MV +L Sbjct: 126 YRNEYEVALHALQIIERKTGYKLPEDEAGSIALHLINAQQNQNDMEDTMNMTKMVNDVLT 185 Query: 137 IVTLHYGIELDENSLNYSRFLTHLKYFSYRAMRHESIPSEDDELYKQVVLKYPEAFACSE 196 IV HYG+ELDENS+NYSRF+THL+YF+YR ++S + ELY+QV KYPEA+ C++ Sbjct: 186 IVKYHYGLELDENSINYSRFVTHLRYFAYRLTHNQSAIEGEKELYEQVKAKYPEAYQCTQ 245 Query: 197 KVRAYLREEYQVETTEGEMVYFMLHIRRVTSRD 229 KV+AY+ Y + + EM+Y MLHI R+TSR+ Sbjct: 246 KVKAYIESTYGKKPNKDEMLYLMLHINRITSRE 278 >B8DDC2.1 B8DDC2_LISMH Transcription antiterminator LicT Length = 261 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 119/213 (55%), Positives = 156/213 (73%) Query: 17 IPPKHLELTDQIIRYAAKDLGTSFSNNIYLALTDHISYAITRSTQGLNLKNALLWEIQKF 76 IP KHL + D +++YA + L T S+NIYL LTDHI++A++R QG+NLKNALLWEI++F Sbjct: 42 IPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLWEIKRF 101 Query: 77 YPKEYHTATHALHLIEKETGLKLPVDEAAFIAMHFVNGQQDGQEMEQTLLVTQMVQGILN 136 Y EY AL IE+E G++L DEA FIA+H VN +QDGQ+M T+ +TQ+VQ IL+ Sbjct: 102 YHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIVQDILS 161 Query: 137 IVTLHYGIELDENSLNYSRFLTHLKYFSYRAMRHESIPSEDDELYKQVVLKYPEAFACSE 196 IVT HYG+ LDE SLNY+RF+THL+YF+ R +R E + S DD LY+QV LKYPEAF C++ Sbjct: 162 IVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQLKYPEAFKCTK 221 Query: 197 KVRAYLREEYQVETTEGEMVYFMLHIRRVTSRD 229 K+ AYL + E T E VY +HI RVT R+ Sbjct: 222 KIDAYLINTHHTELTRDERVYLTIHIYRVTERN 254 >C3BUY0.1 C3BUY0_9BACI Putative uncharacterized protein Length = 282 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 116/213 (54%), Positives = 156/213 (73%) Query: 17 IPPKHLELTDQIIRYAAKDLGTSFSNNIYLALTDHISYAITRSTQGLNLKNALLWEIQKF 76 IP +HL+L+D+II YA L +NIYL LTDHIS++I+R QG LKNALLWE++KF Sbjct: 66 IPSEHLDLSDEIITYAKSKLPGKIGDNIYLTLTDHISFSISRFQQGFILKNALLWEVKKF 125 Query: 77 YPKEYHTATHALHLIEKETGLKLPVDEAAFIAMHFVNGQQDGQEMEQTLLVTQMVQGILN 136 Y EY A HAL +IE++TG KLP DEA IA+H +N QQ+ +ME T+ +T+MV +L Sbjct: 126 YRNEYEVALHALQIIERKTGYKLPEDEAGSIALHLINAQQNQNDMEDTMNMTKMVNDVLT 185 Query: 137 IVTLHYGIELDENSLNYSRFLTHLKYFSYRAMRHESIPSEDDELYKQVVLKYPEAFACSE 196 IV HYG+ELDENS+NYSRF+THL+YF+YR ++S + ELY+QV KYPEA+ C++ Sbjct: 186 IVKYHYGLELDENSINYSRFVTHLRYFAYRLTHNQSTIEGEKELYEQVKAKYPEAYQCTQ 245 Query: 197 KVRAYLREEYQVETTEGEMVYFMLHIRRVTSRD 229 KV+AY+ Y +T + EM+Y MLHI R+ SR+ Sbjct: 246 KVKAYIESTYGKKTNKDEMLYLMLHINRIKSRE 278 >Q71WZ2.1 Q71WZ2_LISMF Transcription antiterminator LicT Length = 284 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 118/213 (55%), Positives = 156/213 (73%) Query: 17 IPPKHLELTDQIIRYAAKDLGTSFSNNIYLALTDHISYAITRSTQGLNLKNALLWEIQKF 76 IP KHL + D +++YA + L T S+NIYL LTDHI++A++R QG+NLKNALLWEI++F Sbjct: 66 IPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLWEIKRF 125 Query: 77 YPKEYHTATHALHLIEKETGLKLPVDEAAFIAMHFVNGQQDGQEMEQTLLVTQMVQGILN 136 Y EY AL IE+E G++L DEA FIA+H VN +QDGQ+M T+ +TQ+VQ IL+ Sbjct: 126 YHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIVQDILS 185 Query: 137 IVTLHYGIELDENSLNYSRFLTHLKYFSYRAMRHESIPSEDDELYKQVVLKYPEAFACSE 196 IVT HYG+ LDE SLNY+RF+THL+YF+ R +R E + S DD LY+QV +KYPEAF C++ Sbjct: 186 IVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEAFKCTK 245 Query: 197 KVRAYLREEYQVETTEGEMVYFMLHIRRVTSRD 229 K+ AYL + E T E VY +HI RVT R+ Sbjct: 246 KIDAYLINTHHTELTRDERVYLTIHIYRVTERN 278 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,226,367,674 Number of extensions: 47289976 Number of successful extensions: 121468 Number of sequences better than 1.0e-05: 801 Number of HSP's gapped: 120045 Number of HSP's successfully gapped: 801 Length of query: 229 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 98 Effective length of database: 1,826,543,238 Effective search space: 179001237324 Effective search space used: 179001237324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)