BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0032.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCN0.1 B1DCN0_9BACL Short-chain dehydrogenase/reductase SDR 357 5e-97 Q65NT6.1 Q65NT6_BACLD Putative uncharacterized protein 343 6e-93 A7Z8K5.1 A7Z8K5_BACA2 YusR 323 6e-87 C3B078.1 C3B078_BACMY Putative uncharacterized protein 282 1e-74 C3AIH1.1 C3AIH1_BACMY Putative uncharacterized protein 282 1e-74 >B1DCN0.1 B1DCN0_9BACL Short-chain dehydrogenase/reductase SDR Length = 246 Score = 357 bits (916), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 175/246 (71%), Positives = 198/246 (80%) Query: 1 MNLSEKVALVTGGGTGIGRAVSLELAACGATVAVNYSRSEAEALETVQRITDQGGRAMAV 60 M L K ALVTGGGTGIGRA SL LA+ GA VAVNYSRS EA ETVQ I GG+AMA+ Sbjct: 1 MELKHKTALVTGGGTGIGRATSLALASKGAAVAVNYSRSRQEAEETVQLIQSLGGKAMAI 60 Query: 61 QANVARDAEVRKMVETIAGAFGTVDLLVNNASITRYIPMDDLEAATEEVWDELYDVNVKG 120 QA+V++D EV+ MVE I FGT+DLLVNNASITR+IP DL+AAT EVWDEL+DVNVKG Sbjct: 61 QADVSKDQEVKDMVEIIVQRFGTLDLLVNNASITRHIPFSDLDAATGEVWDELFDVNVKG 120 Query: 121 MFLCARAVAPYMKKNKQGAIVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALSPDI 180 MF CARA A MKK +GAIVN+ LPYAVSKAAVHGLTKSLARAL+P I Sbjct: 121 MFFCARAAATRMKKQGRGAIVNVGSIAGTTGLGSSLPYAVSKAAVHGLTKSLARALAPHI 180 Query: 181 RVNCVAPGAVATRWWAGREEQMRRLAPNLLLQRIAEPQDIARFICSTLEQEAMTGQIITV 240 RVNCV PGAVATRWWAGREEQM +LAPNLLLQ+I+ P+DIA+ IC++LEQEAMTGQ+ITV Sbjct: 181 RVNCVVPGAVATRWWAGREEQMLQLAPNLLLQQISTPEDIAQLICASLEQEAMTGQMITV 240 Query: 241 DSGQTL 246 D GQT+ Sbjct: 241 DGGQTM 246 >Q65NT6.1 Q65NT6_BACLD Putative uncharacterized protein Length = 246 Score = 343 bits (881), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 169/246 (68%), Positives = 196/246 (79%) Query: 1 MNLSEKVALVTGGGTGIGRAVSLELAACGATVAVNYSRSEAEALETVQRITDQGGRAMAV 60 M + K ALVTGGGTGIGRAVSL LA GA V VNYSRS+AEA ETV I QGGRA+AV Sbjct: 1 MEMKNKTALVTGGGTGIGRAVSLSLANRGAAVVVNYSRSKAEAEETVGMIESQGGRALAV 60 Query: 61 QANVARDAEVRKMVETIAGAFGTVDLLVNNASITRYIPMDDLEAATEEVWDELYDVNVKG 120 +A+V++ +EV+ M + G FGTVDLLVNNASITR+I +DDLE A+EEVWDELY VNVKG Sbjct: 61 KADVSKISEVQDMFDRAVGEFGTVDLLVNNASITRHIELDDLEGASEEVWDELYAVNVKG 120 Query: 121 MFLCARAVAPYMKKNKQGAIVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALSPDI 180 MF CARA AP+MK+NKQGAIVN+ LPYAVSKAAVHGLTKSLA AL+PDI Sbjct: 121 MFNCARAAAPFMKRNKQGAIVNVGSIAGLTGSGSSLPYAVSKAAVHGLTKSLAHALAPDI 180 Query: 181 RVNCVAPGAVATRWWAGREEQMRRLAPNLLLQRIAEPQDIARFICSTLEQEAMTGQIITV 240 RV+CVAPGAV+TRWW G EE+M+RL+ L L+RIAEP+DIA IC+ LEQE +TGQI+T Sbjct: 181 RVSCVAPGAVSTRWWEGNEEKMKRLSQKLPLERIAEPEDIALLICALLEQETVTGQILTA 240 Query: 241 DSGQTL 246 D GQTL Sbjct: 241 DCGQTL 246 >A7Z8K5.1 A7Z8K5_BACA2 YusR Length = 246 Score = 323 bits (829), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 159/246 (64%), Positives = 183/246 (74%) Query: 1 MNLSEKVALVTGGGTGIGRAVSLELAACGATVAVNYSRSEAEALETVQRITDQGGRAMAV 60 MNL K ALVTGGGTGIGRA L LA GA V +NYS S+ EA +T + I GG AM + Sbjct: 1 MNLQHKTALVTGGGTGIGRAACLALAKRGAAVVINYSHSKTEAEQTAEIIIKAGGHAMTI 60 Query: 61 QANVARDAEVRKMVETIAGAFGTVDLLVNNASITRYIPMDDLEAATEEVWDELYDVNVKG 120 QA+V+ D + R MV A FG++DLLVNNASITR+IP+ DLE+AT+EVWDEL+ VNV G Sbjct: 61 QADVSIDKQARDMVNEAASRFGSLDLLVNNASITRHIPLHDLESATKEVWDELFAVNVNG 120 Query: 121 MFLCARAVAPYMKKNKQGAIVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALSPDI 180 MF CARA A +MKK K GAIVN+ LPYAVSKAAVHGLTKSLA AL+PDI Sbjct: 121 MFHCARAAASHMKKQKSGAIVNVGSIAGLTGAGSSLPYAVSKAAVHGLTKSLAHALAPDI 180 Query: 181 RVNCVAPGAVATRWWAGREEQMRRLAPNLLLQRIAEPQDIARFICSTLEQEAMTGQIITV 240 RV CVAPGAVATRWW GREE M RLA +L L+RIA P+DI ICS LEQE++TGQIIT Sbjct: 181 RVCCVAPGAVATRWWTGREETMYRLAGSLPLERIAAPEDIGELICSVLEQESLTGQIITA 240 Query: 241 DSGQTL 246 D GQT+ Sbjct: 241 DCGQTM 246 >C3B078.1 C3B078_BACMY Putative uncharacterized protein Length = 263 Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/246 (58%), Positives = 181/246 (73%) Query: 1 MNLSEKVALVTGGGTGIGRAVSLELAACGATVAVNYSRSEAEALETVQRITDQGGRAMAV 60 M++ +KV ++TGGGTGIG+A +L+LA+ GA V +NYSRSE EALE V I +GG A+ + Sbjct: 18 MDIKDKVVIITGGGTGIGKATALKLASLGAKVVINYSRSEKEALEAVNEIKQRGGTAITL 77 Query: 61 QANVARDAEVRKMVETIAGAFGTVDLLVNNASITRYIPMDDLEAATEEVWDELYDVNVKG 120 +ANVA+ EV MV FGTVD LVNNASIT IPMDDLE+ TEEVWD L+ VNVKG Sbjct: 78 KANVAQKEEVEAMVSQTVHFFGTVDCLVNNASITAQIPMDDLESVTEEVWDSLFSVNVKG 137 Query: 121 MFLCARAVAPYMKKNKQGAIVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALSPDI 180 MF C +AV PYMKK K GAIVN+ +PYA +K+A+H +TKSLA AL+PDI Sbjct: 138 MFHCIKAVVPYMKKQKSGAIVNMGSVAGITGLGSSIPYAATKSAIHTMTKSLAIALAPDI 197 Query: 181 RVNCVAPGAVATRWWAGREEQMRRLAPNLLLQRIAEPQDIARFICSTLEQEAMTGQIITV 240 RVN ++PGAV TRWW+G EE+M +LA NL LQRI+ P DIA I L QE++TGQ+ T+ Sbjct: 198 RVNSISPGAVHTRWWSGNEEKMYQLAGNLPLQRISTPNDIAEAILFQLTQESITGQVFTI 257 Query: 241 DSGQTL 246 D+GQTL Sbjct: 258 DNGQTL 263 >C3AIH1.1 C3AIH1_BACMY Putative uncharacterized protein Length = 263 Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/246 (58%), Positives = 181/246 (73%) Query: 1 MNLSEKVALVTGGGTGIGRAVSLELAACGATVAVNYSRSEAEALETVQRITDQGGRAMAV 60 M++ +KV ++TGGGTGIG+A +L+LA+ GA V +NYSRSE EALE V I +GG A+ + Sbjct: 18 MDIKDKVVIITGGGTGIGKATALKLASLGAKVVINYSRSEKEALEAVNEIKQRGGTAITL 77 Query: 61 QANVARDAEVRKMVETIAGAFGTVDLLVNNASITRYIPMDDLEAATEEVWDELYDVNVKG 120 +ANVA+ EV MV FGTVD LVNNASIT IPMDDLE+ TEEVWD L+ VNVKG Sbjct: 78 KANVAQKEEVEAMVSQTVHFFGTVDCLVNNASITAQIPMDDLESVTEEVWDSLFSVNVKG 137 Query: 121 MFLCARAVAPYMKKNKQGAIVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALSPDI 180 MF C +AV PYMKK K GAIVN+ +PYA +K+A+H +TKSLA AL+PDI Sbjct: 138 MFHCIKAVVPYMKKQKSGAIVNMGSVAGITGLGSSIPYAATKSAIHTMTKSLAIALAPDI 197 Query: 181 RVNCVAPGAVATRWWAGREEQMRRLAPNLLLQRIAEPQDIARFICSTLEQEAMTGQIITV 240 RVN ++PGAV TRWW+G EE+M +LA NL LQRI+ P DIA I L QE++TGQ+ T+ Sbjct: 198 RVNSISPGAVHTRWWSGNEEKMYQLAGNLPLQRISTPNDIAEAILFQLTQESITGQVFTI 257 Query: 241 DSGQTL 246 D+GQTL Sbjct: 258 DNGQTL 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.130 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,211,140,079 Number of extensions: 41293641 Number of successful extensions: 237560 Number of sequences better than 1.0e-05: 28654 Number of HSP's gapped: 189131 Number of HSP's successfully gapped: 28740 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)