BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0030.p (267 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65NT8.1 Q65NT8_BACLD YtlI 270 1e-70 B1DCN1.1 B1DCN1_9BACL Transcriptional regulator, LysR family 269 2e-70 B4BMT1.1 B4BMT1_9BACI Transcriptional regulator, LysR family 177 6e-43 Q5WCH7.1 Q5WCH7_BACSK LysR family transcriptional regulator 168 5e-40 Q928T6.1 Q928T6_LISIN Lin2446 protein 164 5e-39 >Q65NT8.1 Q65NT8_BACLD YtlI Length = 294 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 130/259 (50%), Positives = 182/259 (70%) Query: 1 MQIQKLESDLGVQLLERGKGVALTEAGRLFHEQSQRIVQDMERLQHSITDLKSGEAGSIR 60 MQI+KLE DLG++LLERGK LTEAGRLF E+S+ IV+D++ LQH + DL GE G+IR Sbjct: 34 MQIKKLEEDLGIRLLERGKTFRLTEAGRLFFEESRHIVKDIDHLQHHMADLLLGEGGNIR 93 Query: 61 IGASDPTASYRLPDILQKCMTLFPKMELSVDISGSGALCDRLLRGELDIVICSAPELGKE 120 +GA +P AS LP IL + + +PK+ +SVDI+ S AL +RL++G LD+ +CS P +G + Sbjct: 94 LGAVEPIASCELPQILGRFLADYPKIRVSVDIANSSALGERLVQGSLDLAVCSTPAMGTD 153 Query: 121 LHFEPLFTEAFVLLLPEDHPLVSAPAVTADHLRGHRLLITAPTCPYRKKLESVLTEAAGP 180 L+FEPL+ E V+LLPE HP + + +R HRLLITA C YRKK+E E G Sbjct: 154 LYFEPLYAEELVVLLPEGHPAGNNERIHLKDIREHRLLITANNCTYRKKVEIAFQELPGS 213 Query: 181 PLDTMEIGSMSALKFYVASKLGIAFVPEVILDPVPAGTVSRRLEGSAVDMTCGIICRIAD 240 ++TMEIGSM+ALK YVA+ LG+A +P+ I+ P P GT+ R ++ + +T GI+C+ A Sbjct: 214 QMNTMEIGSMTALKNYVAAGLGVALIPKSIVSPPPPGTIVRFIDDDPISVTFGILCKTAA 273 Query: 241 YPLKPPVRRLYDFIRQELA 259 +PLK +LY +++QEL Sbjct: 274 FPLKQADAKLYQYLKQELG 292 >B1DCN1.1 B1DCN1_9BACL Transcriptional regulator, LysR family Length = 292 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 138/258 (53%), Positives = 181/258 (70%), Gaps = 2/258 (0%) Query: 1 MQIQKLESDLGVQLLERGKGVALTEAGRLFHEQSQRIVQDMERLQHSITDLKSGEAGSIR 60 MQIQ+LE+DLGVQL ERGK + LTEAGRLF+EQS IV+ MERLQ ++ +L++GEAG +R Sbjct: 34 MQIQRLEADLGVQLFERGKKILLTEAGRLFYEQSLDIVRRMERLQSNLAELQNGEAGKLR 93 Query: 61 IGASDPTASYRLPDILQKCMTLFPKMELSVDISGSGALCDRLLRGELDIVICSAPELGKE 120 +G ++PTAS RLP +L M PK+E+S++I+ + L D L +G+LD +CSAPE ++ Sbjct: 94 LGVTEPTASCRLPQLLMAFMNGNPKVEISLEIASTPLLVDGLRQGDLDFALCSAPETVED 153 Query: 121 LHFEPLFTEAFVLLLPEDHPLVSAPAVTADHLRGHRLLITAPTCPYRKKLESVLTEAAGP 180 L+F PLF E FVLLLP +HPL + L GHRLLITA TCPYRKKLE VL + Sbjct: 154 LYFHPLFQEKFVLLLPVNHPLAGLEHIKLSDLEGHRLLITAATCPYRKKLERVLQDNGPL 213 Query: 181 PLDTMEIGSMSALKFYVASKLGIAFVPEVILDPVPAGTVSRRLEGSAVDMTCGIICRIAD 240 ++TMEIGSM+AL+ YVAS GIA VP L+P+P GT L+ ++DM G+ R A Sbjct: 214 SIETMEIGSMTALRHYVASGFGIALVPLSALEPLPGGTQIGELQDVSIDMLMGLASRTA- 272 Query: 241 YPLKPPVRRLYDFIRQEL 258 PL P +LY+ +RQ L Sbjct: 273 -PLSPAAAKLYENLRQSL 289 >B4BMT1.1 B4BMT1_9BACI Transcriptional regulator, LysR family Length = 302 Score = 177 bits (450), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 95/253 (37%), Positives = 140/253 (55%) Query: 2 QIQKLESDLGVQLLERGKGVALTEAGRLFHEQSQRIVQDMERLQHSITDLKSGEAGSIRI 61 I+ LE++LGV L++RGK LTEAG+L E+ +++ + LQ ++ + GE G +RI Sbjct: 35 HIKNLETELGVTLIQRGKSFQLTEAGKLLSEKGAFLLKSFDYLQKTLKECIDGERGIVRI 94 Query: 62 GASDPTASYRLPDILQKCMTLFPKMELSVDISGSGALCDRLLRGELDIVICSAPELGKEL 121 G +PTASYRLP L+ P + ++ I + L D + RG++D +C+ P+ Sbjct: 95 GVMEPTASYRLPAWLRAFRKQHPNILFNIQIHSNQMLVDMVERGDIDAALCATPDTMTGA 154 Query: 122 HFEPLFTEAFVLLLPEDHPLVSAPAVTADHLRGHRLLITAPTCPYRKKLESVLTEAAGPP 181 FEPLF+E VLL P HPL + L LL+T CP+R+ LE L E P Sbjct: 155 SFEPLFSEEVVLLTPSSHPLAQRSVIHLRDLAHEPLLVTNAACPFRRHLEKRLVELGIQP 214 Query: 182 LDTMEIGSMSALKFYVASKLGIAFVPEVILDPVPAGTVSRRLEGSAVDMTCGIICRIADY 241 L EI +M ALK YV + LGIA VP++ + P P GTV + + V +T G++ +A Sbjct: 215 LYQTEISNMLALKHYVQASLGIAVVPKITVTPPPDGTVIQPIADFRVGLTVGMLRLLASE 274 Query: 242 PLKPPVRRLYDFI 254 + P DF+ Sbjct: 275 TVHPATETWIDFL 287 >Q5WCH7.1 Q5WCH7_BACSK LysR family transcriptional regulator Length = 299 Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 135/234 (57%) Query: 1 MQIQKLESDLGVQLLERGKGVALTEAGRLFHEQSQRIVQDMERLQHSITDLKSGEAGSIR 60 MQ++KLE++LGV L+ERGK LTEAGRL Q ++Q+ ERLQ + L GEAG IR Sbjct: 34 MQMKKLENELGVVLIERGKPFQLTEAGRLLALQGDLLLQEFERLQERMDALVKGEAGHIR 93 Query: 61 IGASDPTASYRLPDILQKCMTLFPKMELSVDISGSGALCDRLLRGELDIVICSAPELGKE 120 +GA +P ASYRLP L FP++ +SV I S L + + ELD+ IC+A + Sbjct: 94 VGAMEPAASYRLPYALAPFYEKFPRVNVSVQIESSRKLIEMVEADELDLAICTAANVPTT 153 Query: 121 LHFEPLFTEAFVLLLPEDHPLVSAPAVTADHLRGHRLLITAPTCPYRKKLESVLTEAAGP 180 + F PLF E +L+P+ HPL + ++ L +LIT CP+R+ +E + + Sbjct: 154 VGFLPLFPEEVAILMPDAHPLANEKDISLPQLENEPMLITTAACPFRRNIEKQMRDRGLR 213 Query: 181 PLDTMEIGSMSALKFYVASKLGIAFVPEVILDPVPAGTVSRRLEGSAVDMTCGI 234 P MEI +M ALK YV + GIA VP + P P GTV + + D+ G+ Sbjct: 214 PTYRMEISNMLALKHYVQAGYGIAAVPIRCVMPPPKGTVLKAIRLFEEDLLVGL 267 >Q928T6.1 Q928T6_LISIN Lin2446 protein Length = 299 Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 128/219 (58%) Query: 1 MQIQKLESDLGVQLLERGKGVALTEAGRLFHEQSQRIVQDMERLQHSITDLKSGEAGSIR 60 M+I++LE DL VQL ERGK + LT AGRLF+E++ +++ E L H+I DLK+G AG I+ Sbjct: 34 MRIKQLEQDLDVQLFERGKTLKLTHAGRLFYERAGQLIAQYEVLDHTIFDLKNGNAGLIK 93 Query: 61 IGASDPTASYRLPDILQKCMTLFPKMELSVDISGSGALCDRLLRGELDIVICSAPELGKE 120 IG S+P+AS LP IL++ +T FPK+ ++V + + +L+ GE+D IC PEL E Sbjct: 94 IGISEPSASLVLPQILKQFLTDFPKLMVNVSVDDANTCSQKLIDGEIDFAICGEPELILE 153 Query: 121 LHFEPLFTEAFVLLLPEDHPLVSAPAVTADHLRGHRLLITAPTCPYRKKLESVLTEAAGP 180 + P F + L++ E+HPL S +V LR + T CP R ++E L A G Sbjct: 154 NFYFPFFHDTLDLIVSENHPLASRTSVELLDLRDECFIFTPANCPIRIQIEQHLKRAIGS 213 Query: 181 PLDTMEIGSMSALKFYVASKLGIAFVPEVILDPVPAGTV 219 ME+ S + K++V +G++ + GTV Sbjct: 214 DYKKMELTSSMSHKYFVRENVGVSIFTSTAHSELLEGTV 252 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,542,924,914 Number of extensions: 61989315 Number of successful extensions: 171901 Number of sequences better than 1.0e-05: 9663 Number of HSP's gapped: 170814 Number of HSP's successfully gapped: 9663 Length of query: 267 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 134 Effective length of database: 1,807,701,208 Effective search space: 242231961872 Effective search space used: 242231961872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)