BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0025.p (392 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2YYS3.1 C2YYS3_BACCE NADH dehydrogenase-like protein yjlD 647 0.0 C2QJG6.1 C2QJG6_BACCE NADH dehydrogenase-like protein yjlD 647 0.0 C3ESU6.1 C3ESU6_BACTK NADH dehydrogenase-like protein yjlD 647 0.0 C2WUY9.1 C2WUY9_BACCE NADH dehydrogenase-like protein yjlD 647 0.0 Q815S1.1 Q815S1_BACCR NADH dehydrogenase EC=1.6.99.3 646 0.0 >C2YYS3.1 C2YYS3_BACCE NADH dehydrogenase-like protein yjlD Length = 392 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/392 (80%), Positives = 347/392 (88%) Query: 1 MSKHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAV 60 MSK IVILGAGYGGLL+A+NVRKY SK+EA++TV+NQYPTHQIITELHRLAAG+VAEQA+ Sbjct: 1 MSKQIVILGAGYGGLLAALNVRKYYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAI 60 Query: 61 AMPLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLE 120 AMPLTKLF GKDIDLKIA V+SFSVDSK+++L+ GTTLSYDALVVALGS TAYFGIPGLE Sbjct: 61 AMPLTKLFKGKDIDLKIATVESFSVDSKEIKLAGGTTLSYDALVVALGSKTAYFGIPGLE 120 Query: 121 EYSMVLKSAADAKQIHGHIEGRIREYAKTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 E SMVLKSAADA +I+ H+E RIREYAKT N ADA AD++PKL Sbjct: 121 ENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLTGVELVGELADIMPKL 180 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPVTNVAGNVID 240 AK +GVNP+E+KL+LVEAGPKILPVLPDHLIERA TSL ARGVTFLTGLPVTNVAGN ID Sbjct: 181 AKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLTGLPVTNVAGNEID 240 Query: 241 LKDGQQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGDSAVVF 300 LKDGQ++VANTFVWTGGVQGNPL+GESGLEVNRGRATV+ +LQSTSH DVFVAGDSAVVF Sbjct: 241 LKDGQKLVANTFVWTGGVQGNPLIGESGLEVNRGRATVDAYLQSTSHKDVFVAGDSAVVF 300 Query: 301 AADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVAIIGAS 360 A DGRPYPPTAQIAWQMGELIGYNLYA L A E F+P+NSGTLASLGRKD VA IGAS Sbjct: 301 APDGRPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVATIGAS 360 Query: 361 NTPLKGLPATLMKEASNIRYLSHIKGLFSLAY 392 NTPLKGLPA+LMKEASN+RYLSHIKGLFSLAY Sbjct: 361 NTPLKGLPASLMKEASNVRYLSHIKGLFSLAY 392 >C2QJG6.1 C2QJG6_BACCE NADH dehydrogenase-like protein yjlD Length = 392 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/392 (80%), Positives = 347/392 (88%) Query: 1 MSKHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAV 60 MSK IVILGAGYGGLL+A+NVRKY SK+EA++TV+NQYPTHQIITELHRLAAG+VAEQA+ Sbjct: 1 MSKQIVILGAGYGGLLAALNVRKYYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAI 60 Query: 61 AMPLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLE 120 AMPLTKLF GKDIDLKIA V+SFSVDSK+++L+ GTTLSYDALVVALGS TAYFGIPGLE Sbjct: 61 AMPLTKLFKGKDIDLKIATVESFSVDSKEIKLAGGTTLSYDALVVALGSKTAYFGIPGLE 120 Query: 121 EYSMVLKSAADAKQIHGHIEGRIREYAKTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 E SMVLKSAADA +I+ H+E RIREYAKT N ADA AD++PKL Sbjct: 121 ENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLTGVELVGELADIMPKL 180 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPVTNVAGNVID 240 AK +GVNP+E+KL+LVEAGPKILPVLPDHLIERA TSL ARGVTFLTGLPVTNVAGN ID Sbjct: 181 AKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLTGLPVTNVAGNEID 240 Query: 241 LKDGQQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGDSAVVF 300 LKDGQ++VANTFVWTGGVQGNPL+GESGLEVNRGRATV+ +LQSTSH DVFVAGDSAVVF Sbjct: 241 LKDGQKLVANTFVWTGGVQGNPLIGESGLEVNRGRATVDAYLQSTSHKDVFVAGDSAVVF 300 Query: 301 AADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVAIIGAS 360 A DGRPYPPTAQIAWQMGELIGYNLYA L A E F+P+NSGTLASLGRKD VA IGAS Sbjct: 301 APDGRPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVATIGAS 360 Query: 361 NTPLKGLPATLMKEASNIRYLSHIKGLFSLAY 392 NTPLKGLPA+LMKEASN+RYLSHIKGLFSLAY Sbjct: 361 NTPLKGLPASLMKEASNVRYLSHIKGLFSLAY 392 >C3ESU6.1 C3ESU6_BACTK NADH dehydrogenase-like protein yjlD Length = 392 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/392 (80%), Positives = 347/392 (88%) Query: 1 MSKHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAV 60 MSK IVILGAGYGGLL+A+NVRKY SK+EA++TV+NQYPTHQIITELHRLAAG+V+EQAV Sbjct: 1 MSKQIVILGAGYGGLLAALNVRKYYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAV 60 Query: 61 AMPLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLE 120 AMPLTKLF GKDIDLKIA V+SFSVDSK+++L+ GTTLSYDALVVALGS TAYFGIPGLE Sbjct: 61 AMPLTKLFKGKDIDLKIATVESFSVDSKEIKLAGGTTLSYDALVVALGSKTAYFGIPGLE 120 Query: 121 EYSMVLKSAADAKQIHGHIEGRIREYAKTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 E SMVLKSAADA +I+ H+E RIREYAKT N ADA AD++PKL Sbjct: 121 ENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLTGVELVGELADIMPKL 180 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPVTNVAGNVID 240 AK +GVNP+E+KL+LVEAGPKILPVLPDHLIERA TSL ARGVTFLTGLPVTNVAGN ID Sbjct: 181 AKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLTGLPVTNVAGNEID 240 Query: 241 LKDGQQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGDSAVVF 300 LKDGQ++VANTFVWTGGVQGNPL+GESGLEVNRGRATV+ +LQSTSH DVFVAGDSAVVF Sbjct: 241 LKDGQKLVANTFVWTGGVQGNPLIGESGLEVNRGRATVDAYLQSTSHKDVFVAGDSAVVF 300 Query: 301 AADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVAIIGAS 360 A DGRPYPPTAQIAWQMGELIGYNLYA L A E F+P+NSGTLASLGRKD VA IGAS Sbjct: 301 APDGRPYPPTAQIAWQMGELIGYNLYAALEGKALEEFAPVNSGTLASLGRKDAVATIGAS 360 Query: 361 NTPLKGLPATLMKEASNIRYLSHIKGLFSLAY 392 NTPLKGLPA+LMKEASN+RYLSHIKGLFSLAY Sbjct: 361 NTPLKGLPASLMKEASNVRYLSHIKGLFSLAY 392 >C2WUY9.1 C2WUY9_BACCE NADH dehydrogenase-like protein yjlD Length = 392 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/392 (80%), Positives = 347/392 (88%) Query: 1 MSKHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAV 60 MSK IVILGAGYGGLL+A+NVRKY SK+EA++TV+NQYPTHQIITELHRLAAG+V+EQAV Sbjct: 1 MSKQIVILGAGYGGLLAALNVRKYYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAV 60 Query: 61 AMPLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLE 120 AMPLTKLF GKDIDLKIA V+SFSVDSK+++L+ GTTLSYDALVVALGS TAYFGIPGLE Sbjct: 61 AMPLTKLFKGKDIDLKIATVESFSVDSKEIKLAGGTTLSYDALVVALGSKTAYFGIPGLE 120 Query: 121 EYSMVLKSAADAKQIHGHIEGRIREYAKTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 E SMVLKSAADA +I+ H+E RIREYAKT N ADA AD++PKL Sbjct: 121 ENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLTGVELVGELADIMPKL 180 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPVTNVAGNVID 240 AK +GVNP+E+KL+LVEAGPKILPVLPDHLIERA TSL ARGVTFLTGLPVTNVAGN ID Sbjct: 181 AKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLTGLPVTNVAGNEID 240 Query: 241 LKDGQQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGDSAVVF 300 LKDGQ++VANTFVWTGGVQGNPL+GESGLEVNRGRATV+ +LQSTSH DVFVAGDSAVVF Sbjct: 241 LKDGQKLVANTFVWTGGVQGNPLIGESGLEVNRGRATVDAYLQSTSHKDVFVAGDSAVVF 300 Query: 301 AADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVAIIGAS 360 A DGRPYPPTAQIAWQMGELIGYNLYA L A E F+P+NSGTLASLGRKD VA IGAS Sbjct: 301 APDGRPYPPTAQIAWQMGELIGYNLYAALEGKALEEFAPVNSGTLASLGRKDAVATIGAS 360 Query: 361 NTPLKGLPATLMKEASNIRYLSHIKGLFSLAY 392 NTPLKGLPA+LMKEASN+RYLSHIKGLFSLAY Sbjct: 361 NTPLKGLPASLMKEASNVRYLSHIKGLFSLAY 392 >Q815S1.1 Q815S1_BACCR NADH dehydrogenase EC=1.6.99.3 Length = 392 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/392 (80%), Positives = 347/392 (88%) Query: 1 MSKHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAV 60 MSK IVILGAGYGGLL+A+NVRKY SK+EA++TV+NQYPTHQIITELHRLAAG+V+EQAV Sbjct: 1 MSKQIVILGAGYGGLLAALNVRKYYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAV 60 Query: 61 AMPLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLE 120 AMPLTKLF GKDIDLKIA V+SFSVDSK+++L+ GTTLSYDALVVALGS TAYFGIPGLE Sbjct: 61 AMPLTKLFKGKDIDLKIATVESFSVDSKEIKLAGGTTLSYDALVVALGSKTAYFGIPGLE 120 Query: 121 EYSMVLKSAADAKQIHGHIEGRIREYAKTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 E SMVLKSAADA +I+ H+E RIREYAKT N ADA AD++PKL Sbjct: 121 ENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLTGVELVGELADIMPKL 180 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPVTNVAGNVID 240 AK +GVNP+E+KL+LVEAGPKILPVLPDHLIERA TSL ARGVTFLTGLPVTNVAGN ID Sbjct: 181 AKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLTGLPVTNVAGNEID 240 Query: 241 LKDGQQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGDSAVVF 300 LKDGQ++VANTFVWTGGVQGNPL+GESGLEVNRGRATV+ +LQSTSH DVFVAGDSAVVF Sbjct: 241 LKDGQKLVANTFVWTGGVQGNPLIGESGLEVNRGRATVDAYLQSTSHKDVFVAGDSAVVF 300 Query: 301 AADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVAIIGAS 360 A DGRPYPPTAQIAWQMGELIGYNLYA L A E F+P+NSGTLASLGRKD VA IGAS Sbjct: 301 APDGRPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVATIGAS 360 Query: 361 NTPLKGLPATLMKEASNIRYLSHIKGLFSLAY 392 NTPLKGLPA+LMKEASN+RYLSHIKGLFSLAY Sbjct: 361 NTPLKGLPASLMKEASNVRYLSHIKGLFSLAY 392 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,158,866,762 Number of extensions: 84218188 Number of successful extensions: 280000 Number of sequences better than 1.0e-05: 1771 Number of HSP's gapped: 276296 Number of HSP's successfully gapped: 2034 Length of query: 392 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 254 Effective length of database: 1,760,596,133 Effective search space: 447191417782 Effective search space used: 447191417782 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)