BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0022.p (162 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5L9.1 C0Z5L9_BREBN Putative uncharacterized protein 192 1e-47 C0ZA20.1 C0ZA20_BREBN Putative uncharacterized protein 186 5e-46 C3AY89.1 C3AY89_BACMY Putative uncharacterized protein 180 4e-44 C3AGF5.1 C3AGF5_BACMY Putative uncharacterized protein 180 4e-44 C3BUB4.1 C3BUB4_9BACI Putative uncharacterized protein 179 5e-44 >C0Z5L9.1 C0Z5L9_BREBN Putative uncharacterized protein Length = 281 Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/154 (57%), Positives = 115/154 (74%) Query: 1 LKAALLRYYTEEKDLRGYVEEGGWAHSAAHGADAIDELVQCPESGEPVQLEVLEAVRGML 60 +K A+LRY+ EEKDLRGY+ EGGWAHS AHGAD ELVQCPES E VQ +VL+A++G+L Sbjct: 126 VKNAMLRYFQEEKDLRGYLSEGGWAHSTAHGADVFVELVQCPESDEAVQRDVLQAIQGVL 185 Query: 61 QNGVYLFREEEDERMATIVDTMILRNLLARERIVEWIGSLAACGSQPRSNSQYINRINSK 120 NG ++F +EEDER+A+IVDTMI + LL + + +WI LA+C P+S +Q I R+NSK Sbjct: 186 HNGKHIFNDEEDERLASIVDTMIDKGLLPEQELADWINGLASCAELPKSRTQVIARVNSK 245 Query: 121 NFVRALYFRREREHFGKELHETLLAAELKMNKFA 154 NF+R LYFRR R+ EL +LAA K N+FA Sbjct: 246 NFLRCLYFRRARDSRENELAAAMLAAVTKCNRFA 279 >C0ZA20.1 C0ZA20_BREBN Putative uncharacterized protein Length = 283 Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 91/155 (58%), Positives = 112/155 (72%) Query: 1 LKAALLRYYTEEKDLRGYVEEGGWAHSAAHGADAIDELVQCPESGEPVQLEVLEAVRGML 60 LK +LLRYY EEKDLRGY+ EGGWAH A+HGADA+ ELV+CPES VQLEVL A+ GML Sbjct: 126 LKHSLLRYYKEEKDLRGYLPEGGWAHGASHGADALLELVKCPESDTAVQLEVLAAIEGML 185 Query: 61 QNGVYLFREEEDERMATIVDTMILRNLLARERIVEWIGSLAACGSQPRSNSQYINRINSK 120 NG +F +E+DER+A+IVDTMI LL ++ I +WI L C R+ Q I R+NSK Sbjct: 186 HNGKQIFSDEDDERIASIVDTMIEEGLLPQQEIADWISGLTKCVDWQRNYVQTIARVNSK 245 Query: 121 NFVRALYFRREREHFGKELHETLLAAELKMNKFAA 155 NF+R+LYFRR + G L +LAAE K+NKFA Sbjct: 246 NFLRSLYFRRGQGSRGNVLAAVILAAETKLNKFAT 280 >C3AY89.1 C3AY89_BACMY Putative uncharacterized protein Length = 273 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 111/154 (72%) Query: 1 LKAALLRYYTEEKDLRGYVEEGGWAHSAAHGADAIDELVQCPESGEPVQLEVLEAVRGML 60 L A+LRYY EEKDLRGY+ GGWAHSA+HGAD ELVQC ES + EVL A+ GML Sbjct: 118 LMHAMLRYYKEEKDLRGYLSVGGWAHSASHGADVFVELVQCEESSVALLREVLVAISGML 177 Query: 61 QNGVYLFREEEDERMATIVDTMILRNLLARERIVEWIGSLAACGSQPRSNSQYINRINSK 120 NG ++F +E+DER+ IVDTMI + LL + I +WI LA C + PRS SQ I R+NSK Sbjct: 178 HNGRHIFSDEDDERLVNIVDTMIDKELLPHQEIADWISGLAQCCNLPRSRSQVIARVNSK 237 Query: 121 NFVRALYFRREREHFGKELHETLLAAELKMNKFA 154 NF+R+LYFRR ++ G+EL+ +L E K+N+F+ Sbjct: 238 NFLRSLYFRRGQDIRGEELNTVMLGTEAKLNRFS 271 >C3AGF5.1 C3AGF5_BACMY Putative uncharacterized protein Length = 273 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 110/154 (71%) Query: 1 LKAALLRYYTEEKDLRGYVEEGGWAHSAAHGADAIDELVQCPESGEPVQLEVLEAVRGML 60 L A+LRYY EEKDLRGY+ GGWAHSA+HGAD ELVQC ES + EVL A+ GML Sbjct: 118 LMHAMLRYYKEEKDLRGYLSVGGWAHSASHGADVFVELVQCEESSVALLREVLVAISGML 177 Query: 61 QNGVYLFREEEDERMATIVDTMILRNLLARERIVEWIGSLAACGSQPRSNSQYINRINSK 120 NG ++F +E+DER+ IVDTMI + LL + I +WI LA C + PRS SQ I R+NSK Sbjct: 178 HNGRHIFSDEDDERLVNIVDTMIDKELLPHQEIADWISGLAQCCNLPRSRSQVIARVNSK 237 Query: 121 NFVRALYFRREREHFGKELHETLLAAELKMNKFA 154 NF+R+LYFRR ++ G EL+ +L E K+N+F+ Sbjct: 238 NFLRSLYFRRGQDIRGDELNTVMLGTEAKLNRFS 271 >C3BUB4.1 C3BUB4_9BACI Putative uncharacterized protein Length = 273 Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 110/154 (71%) Query: 1 LKAALLRYYTEEKDLRGYVEEGGWAHSAAHGADAIDELVQCPESGEPVQLEVLEAVRGML 60 L A+LRYY EEKDLRGY+ GGWAHSA+HGAD ELVQC ES + EVL A+ GML Sbjct: 118 LMHAMLRYYKEEKDLRGYLSVGGWAHSASHGADIFVELVQCEESSVALLREVLVAISGML 177 Query: 61 QNGVYLFREEEDERMATIVDTMILRNLLARERIVEWIGSLAACGSQPRSNSQYINRINSK 120 NG ++F +E+DER+ IVDTMI + LL + I +WI LA C + PRS SQ I R+NSK Sbjct: 178 HNGRHIFSDEDDERLVNIVDTMIDKELLPHQEIADWISGLAQCCNLPRSRSQVIARVNSK 237 Query: 121 NFVRALYFRREREHFGKELHETLLAAELKMNKFA 154 NF+R+LYFRR ++ G EL+ +L E K+N+F+ Sbjct: 238 NFLRSLYFRRGQDIRGDELNTVMLGTEAKLNRFS 271 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 903,132,590 Number of extensions: 33376427 Number of successful extensions: 88476 Number of sequences better than 1.0e-05: 275 Number of HSP's gapped: 88222 Number of HSP's successfully gapped: 275 Length of query: 162 Length of database: 3,060,696,203 Length adjustment: 122 Effective length of query: 40 Effective length of database: 1,911,332,373 Effective search space: 76453294920 Effective search space used: 76453294920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)