BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0017.p (194 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K881.1 B3K881_9BACI ThiJ/PfpI domain protein 174 3e-42 C4CNB0.1 C4CNB0_9CHLR Transcriptional regulator containing an am... 157 7e-37 C1VD44.1 C1VD44_9EURY Transcriptional regulator containing an am... 153 6e-36 C3K5Q3.1 C3K5Q3_PSEFS Putative hydratase 112 2e-23 A2VVQ2.1 A2VVQ2_9BURK Putative uncharacterized protein 109 1e-22 >B3K881.1 B3K881_9BACI ThiJ/PfpI domain protein Length = 201 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/189 (48%), Positives = 124/189 (65%) Query: 1 MRIAFVLFDGITFLDFAGFYDVIRRLGNFEAGHGLEMDICGFREEVQDEQGLTVKISKVQ 60 M++AF+LF G+T LD GF +V+ RL + D C ++ D++GL +S+V+ Sbjct: 1 MKMAFILFHGMTALDLIGFTEVMTRLARIRPEADISWDYCALSTQITDDRGLAYVVSRVK 60 Query: 61 PELGQYDLLFVPGGMGTRILRNDGPFISWLQGAKSVPYKVSVCTGSLLLGAAGFLRDCWA 120 P+L +YDL+FVPGG TR LR D ++WLQ A+ + VSVCTGSLLLGAAG L A Sbjct: 61 PDLSEYDLVFVPGGFTTRELRYDPDVLTWLQTAREAKHLVSVCTGSLLLGAAGLLEGKRA 120 Query: 121 TTHPSSYGLLEPYCGQVIETRIVQDGRMITGGGVSTSIDLGLYMMSLLAGEDAMQAVKKQ 180 TT+ S+Y LL PYC +V++ RIVQDGR+ TG GVS+SIDLGLY++ L + V+ Sbjct: 121 TTNASAYELLTPYCKEVVQARIVQDGRLFTGSGVSSSIDLGLYVLERLTDAATAERVQTD 180 Query: 181 IDYPYVMQG 189 + YPY G Sbjct: 181 MSYPYYRTG 189 >C4CNB0.1 C4CNB0_9CHLR Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Length = 187 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 87/185 (47%), Positives = 119/185 (64%) Query: 1 MRIAFVLFDGITFLDFAGFYDVIRRLGNFEAGHGLEMDICGFREEVQDEQGLTVKISKVQ 60 M+ AFV++DG+T LDF G YD + RL + DIC + EV+D GL +++ Sbjct: 1 MKFAFVIYDGMTALDFIGAYDPLTRLKTMGFMPEVTWDICAYTAEVRDGSGLQFTPTRIG 60 Query: 61 PELGQYDLLFVPGGMGTRILRNDGPFISWLQGAKSVPYKVSVCTGSLLLGAAGFLRDCWA 120 L YDL++VPGG GTR L D F++WL A+ SVCTGSLLLGAAG L A Sbjct: 61 EPLAGYDLVYVPGGFGTRTLVQDAGFLAWLATARDSRCLASVCTGSLLLGAAGLLAGRRA 120 Query: 121 TTHPSSYGLLEPYCGQVIETRIVQDGRMITGGGVSTSIDLGLYMMSLLAGEDAMQAVKKQ 180 T+HPS+Y L Y QV++ R+V +G ++TG GVS+SIDLGLY++ +AG + +K+Q Sbjct: 121 TSHPSAYDELRAYTPQVVDERVVDEGNLVTGRGVSSSIDLGLYLVERIAGPEVKARIKQQ 180 Query: 181 IDYPY 185 +DYPY Sbjct: 181 MDYPY 185 >C1VD44.1 C1VD44_9EURY Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Length = 205 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 83/185 (44%), Positives = 111/185 (60%), Gaps = 3/185 (1%) Query: 1 MRIAFVLFDGITFLDFAGFYDVIRRLGNFE-AGHGLEMDICGFREEVQDEQGLTVKISKV 59 MR AFV FD +T LDF G +D + RL + A E +IC E V L V Sbjct: 20 MRTAFVAFDDMTALDFVGAFDPLTRLDTMDLAPFPFEWNICARAETVTTTANLQFGADSV 79 Query: 60 QPELGQYDLLFVPGGMGTRILRNDGPFISWLQGAKSVPYKVSVCTGSLLLGAAGFLRDCW 119 L +YD++ +PGG GTR LR D F+SWL+ A SVCTGSLLLGAAGFL Sbjct: 80 GESLTEYDIVVIPGGAGTRTLREDDHFLSWLRTADP-DLLASVCTGSLLLGAAGFLDGQT 138 Query: 120 ATTHPSSYGLLEPYCGQVIETRIVQDGRMITGGGVSTSIDLGLYMMSLLAGEDAMQAVKK 179 ATTHP++ L YC +V + R+V +G ++T GVS+++DLGLY++ L E+ + V + Sbjct: 139 ATTHPAATDELAAYC-EVADDRVVDEGEIVTARGVSSALDLGLYLVERLTDEETRKTVAE 197 Query: 180 QIDYP 184 Q+DYP Sbjct: 198 QMDYP 202 >C3K5Q3.1 C3K5Q3_PSEFS Putative hydratase Length = 226 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 6/184 (3%) Query: 1 MRIAFVLFDGITFLDFAGFYDVIRRLGNFEAGHGLEMDICGFREEVQDEQGLTVKISKVQ 60 ++I F+LF GI LD G YDV+ L + + H + D+ E V GL + Sbjct: 3 LQIGFLLFPGIQQLDLTGPYDVLGSLPDVKL-HLVWKDL----EPVTSSTGLVFTPTMTY 57 Query: 61 PELGQYDLLFVPGGMGTRILRNDGPFISWLQG-AKSVPYKVSVCTGSLLLGAAGFLRDCW 119 E + D++ VPGG G L D + +L+ A++ Y SVCTGSL+LGAAG LR Sbjct: 58 AECPRLDVICVPGGSGVGALMEDPQTLDFLKAQAQTARYVTSVCTGSLVLGAAGLLRGRQ 117 Query: 120 ATTHPSSYGLLEPYCGQVIETRIVQDGRMITGGGVSTSIDLGLYMMSLLAGEDAMQAVKK 179 ATTH + + +L P ++ R+V+DG ++TGGG++ ID L + + L E A Q V+ Sbjct: 118 ATTHWAYHDMLAPLGAIPVQARVVRDGNLLTGGGITAGIDFALSLAAELYSEAAAQLVQL 177 Query: 180 QIDY 183 QI+Y Sbjct: 178 QIEY 181 >A2VVQ2.1 A2VVQ2_9BURK Putative uncharacterized protein Length = 240 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 101/184 (54%), Gaps = 6/184 (3%) Query: 1 MRIAFVLFDGITFLDFAGFYDVIRRLGNFEAGHGLEMDICGFREEVQDEQGLTVKISKVQ 60 + I ++F G+ LD G +DV+ L + + R+ V GL + + Sbjct: 16 LHIGLLVFPGVQQLDLTGPHDVLASLPDATVHL-----VWKSRDAVASSSGLALAPTCTF 70 Query: 61 PELGQYDLLFVPGGMGTRILRNDGPFISWLQG-AKSVPYKVSVCTGSLLLGAAGFLRDCW 119 + D++ +PGG+G L D I+++Q A + Y SVCTGSLLLG AG LR Sbjct: 71 DDCPPLDVICIPGGIGINELLLDAETIAFVQQRAATARYVTSVCTGSLLLGVAGLLRGRR 130 Query: 120 ATTHPSSYGLLEPYCGQVIETRIVQDGRMITGGGVSTSIDLGLYMMSLLAGEDAMQAVKK 179 ATTH + + LLEP + R+V+DG ++TGGGV+ ID L + + L G++A QA++ Sbjct: 131 ATTHWAFHALLEPLGAIPVRERVVRDGNLVTGGGVTAGIDFALTIAAELVGDEAAQAIQL 190 Query: 180 QIDY 183 Q++Y Sbjct: 191 QLEY 194 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.144 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,198,250,917 Number of extensions: 49631127 Number of successful extensions: 131258 Number of sequences better than 1.0e-05: 824 Number of HSP's gapped: 130938 Number of HSP's successfully gapped: 824 Length of query: 194 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 66 Effective length of database: 1,854,806,283 Effective search space: 122417214678 Effective search space used: 122417214678 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 127 (53.5 bits)