BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0008.p (266 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1U485.1 C1U485_9SPHI Putative N-acetylglucosaminyltransferase 132 4e-29 C1QDZ2.1 C1QDZ2_9SPIR Putative N-acetylglucosaminyltransferase 127 1e-27 B9AN02.1 B9AN02_9BACT Putative uncharacterized protein 124 1e-26 C5E893.1 C5E893_BIFLO Glycoside transferase family protein 120 8e-26 A6E894.1 A6E894_9SPHI Putative uncharacterized protein 118 4e-25 >C1U485.1 C1U485_9SPHI Putative N-acetylglucosaminyltransferase Length = 294 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 134/246 (54%), Gaps = 17/246 (6%) Query: 11 HVDRKSGIEAQ--ILHREDIHFVKQPVDVQWGHYGQIECILKCFELIKEHG-HFDYIHII 67 H+D+K+ + A +L +++ V + V WG Y +E L+ F I G HFDY++++ Sbjct: 33 HLDQKADLSAFGFLLESKNVVLVPARIRVGWGAYSIVEATLQGFRAIAHSGIHFDYVNLL 92 Query: 68 SGQDLPLVSNRTIVDFFKEHQGKEFVKHLQLPNEAEMWG-CMYRVSVYYPRFLVSRAKAV 126 SG D PL S I DFF + G F+++ ++ +E W + R++ Y+ K + Sbjct: 93 SGADYPLKSAGEIHDFFSRNNGHNFMEYHRVSDE---WTEAIPRLTGYHLTNYQFPGKHL 149 Query: 127 SEIRNRYINLVMSVPMLKRSLKHLPDALYKGSNWMSVTGECMEYILEYIRDNPGYVRLFK 186 +E +++N ++ + L+ + S WM++T + ++YIL Y+ D+P +R FK Sbjct: 150 AE---KWLNKLLPARTMPAGLEAVGR-----SQWMTLTMDAVQYILAYLDDHPEVIRYFK 201 Query: 187 NSFCGDEIFFHSIILNSRFKHKVVNEIKRYTDWDTGPEFPRTLRAEDYERIRQKGTECFW 246 ++ DEI F +I+ NS F+ +VN+ RY DW G P+ L ED++R+ G + Sbjct: 202 LTWAPDEIIFQTILYNSPFRSSLVNDNLRYIDWSKGGASPKVLTEEDFDRLSDSGK--LF 259 Query: 247 GRKFDL 252 RKFDL Sbjct: 260 ARKFDL 265 >C1QDZ2.1 C1QDZ2_9SPIR Putative N-acetylglucosaminyltransferase Length = 277 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 142/258 (55%), Gaps = 19/258 (7%) Query: 5 NFXXXXHVDRKSGIEAQILHREDIHFVKQPVDVQWGHYGQIECILKCFELIKE--HGHFD 62 +F H+D++S + + ++++ K+ ++G + + L+KE ++D Sbjct: 27 DFDIYVHIDKRSKLNLKSF--DNVNIYKKIA----TYHGDVSLVDATLFLLKEAFKNNYD 80 Query: 63 YIHIISGQDLPLVSNRTIVDFFKEHQGKEFVKHLQLPNEAEMWGCM-YRVSVYYPRFLVS 121 ISGQD+PL +N+ I++FF+++ K+F+ ++ + + ++ M +R++ Y L Sbjct: 81 RYIFISGQDIPLKTNKEIINFFEDNNDKQFISYISIRDNEGIYKEMSFRLNAYNFGKLYR 140 Query: 122 RAKAVSEIRNRYINLVMSVPMLKRSLKHLPDALYKGSNWMSVTGECMEYILEYIRDNPGY 181 + + ++ + ++P +KR P+ +Y GS W ++ + ++YILEY+ NP Y Sbjct: 141 KL-----LGRKFREAISNIPFIKRKT---PENIYYGSQWWNLNHDAIKYILEYVEKNPEY 192 Query: 182 VRLFKNSFCGDEIFFHSIILNSRFKHKVVNEIKRYTDWDTGPEFPRTLRAEDYERIRQKG 241 ++ F ++ DE FF SI+LNS FK K V+ RY W G P L+ +DYE I++ Sbjct: 193 LKRFNYTWGSDEFFFQSILLNSSFKDKCVDNCLRYLIWGVGT--PINLKMKDYEGIKENI 250 Query: 242 TECFWGRKFDLDVDREIV 259 + + RKFD ++D +I+ Sbjct: 251 KDNLFARKFDENIDNDII 268 >B9AN02.1 B9AN02_9BACT Putative uncharacterized protein Length = 291 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 136/259 (52%), Gaps = 30/259 (11%) Query: 11 HVDRKS----GIEAQILHREDIHFVKQPVDVQWGHYGQIECILKCFELIKEHGHFDYIHI 66 H+DRKS G E +L + + ++Q VDV+WG+ QI+ FE +HG + Y H+ Sbjct: 35 HIDRKSDMLDGAEPLVLSKACLFVLEQRVDVRWGNLSQIKAEYVLFEEALKHGPYAYYHL 94 Query: 67 ISGQDLPLVSNRTIVDFFKEHQGKEFVKHLQLPNEAEMWGCMYRVSVYYPRFLVSRAK-- 124 +SGQDLP+ S I FF+EHQGKEFV + E E W C ++ Y+ ++R+K Sbjct: 95 LSGQDLPIKSQDYIHQFFEEHQGKEFVG-INHGEEFE-WDCRRKMMRYWLFTSLTRSKYG 152 Query: 125 ---AVSEIRNRYINLVMSVPMLKRSLKHLPDALYKGSNWMSVTGECMEYILEYIRDNPGY 181 A++ N+Y+++++ +P L R KG+NW+S+T C+EY+ + P Sbjct: 153 ALNAITRRLNKYLSMLL-MPFLHRQKMDFA----KGANWVSITQACVEYV---VSQKPFV 204 Query: 182 VRLFKNSFCGDEIFFHSIILN-SRFKHKVVNEIKRY------TDWDTGPEFPRTLRAEDY 234 ++ F +FC DE F +++ N F+ + +E Y DW G + TL D Sbjct: 205 LKRFNYTFCPDEFFLQTLVWNHPDFRAALYSEKDEYEGCMRLIDWKRGNPYVWTL--ADK 262 Query: 235 ERIRQKGTECFWGRKFDLD 253 E + Q + RKFD++ Sbjct: 263 EELEQSNR--LFARKFDME 279 >C5E893.1 C5E893_BIFLO Glycoside transferase family protein Length = 291 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 130/266 (48%), Gaps = 30/266 (11%) Query: 11 HVDRKSG------IEAQILHREDIHFVKQPVDVQWGHYGQIECILKCFELIKEHGHFDYI 64 H+D K G + Q+ H E + + VDV+WG + QIEC L+ E GH+DY Sbjct: 34 HLDAKLGTVDVGQFKDQLKHAE-LCVLANRVDVRWGDFSQIECELRLLE-ASIPGHYDYY 91 Query: 65 HIISGQDLPLVSNRTIVDFFKEHQGKEFVKHLQLPNEAEMWGCMYRVSVYYPRFLVSRAK 124 H++SG DLPL S I +F+ +QG EFV + E +G RVS Y F SR K Sbjct: 92 HLMSGADLPLQSQDVIHTYFERYQGTEFVHFDAKSVDPETYG---RVSKY--AFFSSREK 146 Query: 125 AVSEIRNRYINLVMSVPMLKRSLKHLPDALYKGSNWMSVTGECMEYILEYIRDNPGYVRL 184 + E + ++ + + L + KG+NW S+T +C YI + R+ Sbjct: 147 NIFEKVMYRLTMLAQFWIDRGRLYGIQ--YQKGANWFSITDDCARYI---VSRRKRVERV 201 Query: 185 FKNSFCGDEIFFHSIILNSRFKHKV--------VNEIKRYTDWDTGPEFPRTLRAEDYER 236 F + CGDE F +II+NS F+ K+ I+ DW G P R EDY Sbjct: 202 FHRTRCGDEFFIQTIIVNSGFEKKLYRPNFNDSYKTIRYCIDWKRGN--PYVFRKEDYTM 259 Query: 237 IRQKGTECFWGRKFDLDVDREIVQDI 262 ++ G + RKFD D+D EI++ I Sbjct: 260 LKASGM--LFARKFDEDIDSEIIKMI 283 >A6E894.1 A6E894_9SPHI Putative uncharacterized protein Length = 283 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 133/267 (49%), Gaps = 15/267 (5%) Query: 5 NFXXXXHVDRKSGIEAQILHRE-DIHFVKQPVDVQWGHYGQIECILKCFELIKEHGHFDY 63 +F H D K ++ + + ++ VK+ + V WG Y QI L+ F +DY Sbjct: 26 DFDVYIHADAKWELDESLFKNDPNVFMVKRHI-VNWGSYHQILATLELFN-TSFKKDYDY 83 Query: 64 IHIISGQDLPLVSNRTIVDFFKEHQGKEFVKHLQLPNEAEMW----GCMYRVSVYYPRFL 119 +ISG DLP+ SN I +F + + + FV LP +A W G R+ Y+ Sbjct: 84 YMLISGLDLPVKSNIFIKNFMENNLTRSFVNSESLPKKA--WAGQNGGFDRIDYYFGLDF 141 Query: 120 VSRAKAVSEIRNRYINLVMSVPMLKRSLKHLPDALYKGSNWMSVTGECMEYILEYIRDNP 179 + + +I + +R K Y G NW+++ E M+Y++ ++++ P Sbjct: 142 NTGVDILKRKAFSFIQRLQRKYGFRR--KRFDIEFYGGWNWVNLNREAMQYLMNFLKEKP 199 Query: 180 GYVRLFKNSFCGDEIFFHSIILNSRFKHKVVNEIKRYTDWDTGPEFPRTLRAEDYERIRQ 239 +++ FKN++C DEI+ +++LN ++VN RYT W+ P+ L +D E ++Q Sbjct: 200 AFLKSFKNTYCADEIWLQTVLLNGPL--EIVNNNYRYTSWEDHASHPKLLTMQDLEALKQ 257 Query: 240 KGTECFWGRKFDLDVDREIVQDILQLA 266 +E + RKFD DR++++ + Q+ Sbjct: 258 --SEDLFARKFDEQEDRKVIEAVYQMT 282 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.142 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,622,692,283 Number of extensions: 65903309 Number of successful extensions: 174991 Number of sequences better than 1.0e-05: 57 Number of HSP's gapped: 174955 Number of HSP's successfully gapped: 57 Length of query: 266 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 133 Effective length of database: 1,807,701,208 Effective search space: 240424260664 Effective search space used: 240424260664 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)