BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0007.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KH09.1 B3KH09_9BACI Beta-lactamase domain protein 246 9e-64 B1DKA9.1 B1DKA9_9BACL Beta-lactamase domain protein 231 5e-59 C1PBI2.1 C1PBI2_BACCO Beta-lactamase domain protein 217 6e-55 B1DD30.1 B1DD30_9BACL Beta-lactamase domain protein 216 2e-54 C1TIP9.1 C1TIP9_9FIRM Zn-dependent hydrolase, glyoxylase 206 1e-51 >B3KH09.1 B3KH09_9BACI Beta-lactamase domain protein Length = 250 Score = 246 bits (629), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 125/245 (51%), Positives = 153/245 (62%) Query: 3 IAKGIEMLEISVPVMGGTDTFYPTLIWDEEEAVLIDTGVPGSAQKFKEATAAASVPWNLV 62 I +GI MLEIS +MG T+T +PT +WD + VLIDTG PG +E + V Sbjct: 4 IDQGIAMLEISAAMMGRTETIHPTFLWDHQNRVLIDTGYPGQFPLIQEQISDCGFSVQDV 63 Query: 63 RTILITHQDIDHIGSLPALLEQSESKITVLAHEIERPYIEGKQMLLKHTXXXXXXXXXXX 122 I+ITHQD+DHIGSLPA+++ + V A EIE+PYIEG L K + Sbjct: 64 SKIIITHQDLDHIGSLPAIIQHCKQAPEVFASEIEKPYIEGDTRLFKLSPEAIAQALASL 123 Query: 123 XKNISEEWKRAFLHVLAHPPRAGVDRTLTGGEVLPIGGGIAVIHTPGHSPGHLSLYHQAS 182 N+ EW+ AF H L +PP A V+R L GE LP GGGI IHTPGH+PGH SLYH S Sbjct: 124 PDNVPPEWRNAFKHTLENPPSAPVNRMLRDGEELPFGGGIIAIHTPGHTPGHTSLYHIPS 183 Query: 183 RTLIAADALTVRGGELCGPDAAATPDMAEALQSLHKFAAFEINQVICYHGGLFRGDVNRR 242 +TL AADAL VR G+L GPD A T D+A A SL K ++I VICYHGGLF + N+R Sbjct: 184 KTLNAADALNVREGQLIGPDPATTIDLAFARLSLQKLTHYDIRNVICYHGGLFTDNPNQR 243 Query: 243 IAELA 247 I ELA Sbjct: 244 IRELA 248 >B1DKA9.1 B1DKA9_9BACL Beta-lactamase domain protein Length = 241 Score = 231 bits (588), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 120/249 (48%), Positives = 159/249 (63%), Gaps = 9/249 (3%) Query: 1 MHIAKGIEMLEISVPVMGGTDTFYPTLIWDEEEAVLIDTGVPGSAQKFKEATAAASVPWN 60 M IA GIEMLE+ + G T +PT+++D++E VL+DTG+PGSA E A + Sbjct: 1 MRIADGIEMLELDL----GPMTVWPTVLFDKDEWVLVDTGMPGSASTIIELAKLAGIVEQ 56 Query: 61 LVRTILITHQDIDHIGSLPALLEQSESKITVLAHEIERPYIEGKQMLLKHTXXXXXXXXX 120 + TIL+THQD+DHIG LP + ++ + AHE +R I+GK+ +LK + Sbjct: 57 KLNTILLTHQDLDHIGGLPGF-KADNPELVIYAHEDDRAVIDGKKPMLKASPERIAALLG 115 Query: 121 XXXKNISEEWKRAFLHVLAHPPRAGVDRTLTGGEVLPIGGGIAVIHTPGHSPGHLSLYHQ 180 + +++ F+H P A VDRT+ GE LP GGG+ VIHTPGH+PGH+SLYHQ Sbjct: 116 ALPEVARSQFEATFIH----PTGANVDRTMADGENLPFGGGVTVIHTPGHTPGHVSLYHQ 171 Query: 181 ASRTLIAADALTVRGGELCGPDAAATPDMAEALQSLHKFAAFEINQVICYHGGLFRGDVN 240 +S+TLIA DA+ V GEL GP A TPDMA ALQSL K F+I VICYHGG+F+GDV Sbjct: 172 SSKTLIAGDAMVVDNGELKGPREAVTPDMASALQSLKKLKDFDIETVICYHGGVFKGDVQ 231 Query: 241 RRIAELAQA 249 RIA L + Sbjct: 232 GRIAALTEG 240 >C1PBI2.1 C1PBI2_BACCO Beta-lactamase domain protein Length = 238 Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 158/246 (64%), Gaps = 11/246 (4%) Query: 3 IAKGIEMLEISVPVMGGTDTFYPTLIWDEEEAVLIDTGVPGSAQKFKEATAAASVPWNLV 62 IA+G+ MLEI++ +PTLIWDE++AVL+D G+PGS A VP+ + Sbjct: 4 IAEGVAMLEINL----NHFIIHPTLIWDEQKAVLVDAGMPGSLDLIHAEMEKAGVPFEKL 59 Query: 63 RTILITHQDIDHIGSLPALLEQSESKITVLAHEIERPYIEGKQMLLKHTXXXXXXXXXXX 122 +++THQD+DHIGS+P +L +S ITV AH +++PYIEG+++L+K Sbjct: 60 DAVILTHQDMDHIGSVPEILAESGHSITVYAHGLDKPYIEGERLLIK---ADPEKIDPAR 116 Query: 123 XKNISEEWKRAFLHVLAHPPRAGVDRTLTGGEVLPIGGGIAVIHTPGHSPGHLSLYHQAS 182 +++ EE K+ +L+ PP+A VD+ + GEVLP GGGI VI TPGH+PGH LY + S Sbjct: 117 WESMPEEMKQMYLN----PPKAKVDKVIGDGEVLPFGGGIEVIFTPGHTPGHCCLYLKKS 172 Query: 183 RTLIAADALTVRGGELCGPDAAATPDMAEALQSLHKFAAFEINQVICYHGGLFRGDVNRR 242 +TLIAADA+ G+L GP TPDM A+ SL K F+I VICYHGGL +VN + Sbjct: 173 KTLIAADAMVADNGKLHGPRQQVTPDMGTAMASLKKLLDFDIESVICYHGGLCYENVNEQ 232 Query: 243 IAELAQ 248 I +LA+ Sbjct: 233 IRKLAK 238 >B1DD30.1 B1DD30_9BACL Beta-lactamase domain protein Length = 245 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 148/241 (61%), Gaps = 3/241 (1%) Query: 7 IEMLEISVPVMGGTDTFYPTLIWDEEEAVLIDTGVPGSAQKFKEATAAASVPWNLVRTIL 66 + ML IS PVMG DT +P LIWD++ +L+DTG P + + A AA + I+ Sbjct: 5 LAMLSISAPVMGTIDTVHPVLIWDDQHQILLDTGYPAQLPQLQAAIDAAGGSPEKLTHII 64 Query: 67 ITHQDIDHIGSLPALLEQSESKITVLAHEIERPYIEGKQMLLKHTXXXXXXXXXXXXKNI 126 +THQDIDHIG+LP L S I VLAH +E+PYI+G L++ T ++ Sbjct: 65 LTHQDIDHIGNLPEL--TSRVGIEVLAHPLEKPYIQGDIRLIRFTDEAIASIDRMP-DSV 121 Query: 127 SEEWKRAFLHVLAHPPRAGVDRTLTGGEVLPIGGGIAVIHTPGHSPGHLSLYHQASRTLI 186 E ++ ++ +PP+A VDR + GGE LP+GGGI VI TPGH+PGH+SLYH+ SRTLI Sbjct: 122 PESFRNGLKRMMLNPPKANVDREVIGGEFLPLGGGITVIDTPGHTPGHISLYHEPSRTLI 181 Query: 187 AADALTVRGGELCGPDAAATPDMAEALQSLHKFAAFEINQVICYHGGLFRGDVNRRIAEL 246 A DAL VR GEL G D A T D A S+ F+I ++CYHGGL+ V R+ EL Sbjct: 182 AGDALMVRDGELYGADPATTLDPLTAQASIAGLLDFDIQTIVCYHGGLYNQRVMERLFEL 241 Query: 247 A 247 A Sbjct: 242 A 242 >C1TIP9.1 C1TIP9_9FIRM Zn-dependent hydrolase, glyoxylase Length = 245 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 113/249 (45%), Positives = 148/249 (59%), Gaps = 9/249 (3%) Query: 1 MHIAKGIEMLEISVPVMGGTDTFYPTLIWDEEEAVLIDTGVPGSAQKFKEATAAASVPWN 60 M + KGIEMLEIS VMG YPTLIW +E VLID G P F++A A VP+N Sbjct: 1 MKVDKGIEMLEISANVMGKPGIIYPTLIWSNDEVVLIDAGFPDQIALFRDAFKKAGVPFN 60 Query: 61 LVRTILITHQDIDHIGSLPALLEQSE-SKITVLAHEIERPYIEGKQMLLKHTXXXXXXXX 119 ++ I++THQDIDHIGSL ++ Q+E + VLAHE E+ YI+G + +K Sbjct: 61 KLKIIILTHQDIDHIGSLLSI--QTELPNVKVLAHEEEKAYIQGDKSPIKVAQLEARLNS 118 Query: 120 XX-XXKNISEEWKRAFLHVLAHPPRAGVDRTLTGGEVLPIGGGIAVIHTPGHSPGHLSLY 178 K I E+ K F + +A +D+TL G E LP GGI VI+TPGH+PGH+ LY Sbjct: 119 LSPEGKAIYEKLKAGFQNC-----KAKIDKTLMGQEELPYCGGITVIYTPGHTPGHICLY 173 Query: 179 HQASRTLIAADALTVRGGELCGPDAAATPDMAEALQSLHKFAAFEINQVICYHGGLFRGD 238 H+ S+TLI+ D L++ G L + D A SL K ++I +VICYHGGLF+ Sbjct: 174 HKQSKTLISGDLLSIEEGRLIKTPSFVDFDNDLAKNSLKKLIQYDIEKVICYHGGLFKDK 233 Query: 239 VNRRIAELA 247 N RIAEL Sbjct: 234 TNTRIAELT 242 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,483,015,420 Number of extensions: 57430481 Number of successful extensions: 158241 Number of sequences better than 1.0e-05: 308 Number of HSP's gapped: 158350 Number of HSP's successfully gapped: 339 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)