BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0574.0006.p
         (66 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9Y613.1 B9Y613_9FIRM Putative uncharacterized protein                107   4e-22
C0MEJ1.1 C0MEJ1_STRS7 Putative transcriptional regulator              106   9e-22
C0M739.1 C0M739_STRE4 Putative transcriptional regulator              106   9e-22
B1KXN7.1 B1KXN7_CLOBM HTH DNA-binding protein                         105   9e-22
Q467Q5.1 Q467Q5_METBF Putative uncharacterized protein                 97   6e-19

>B9Y613.1 B9Y613_9FIRM Putative uncharacterized protein
          Length = 83

 Score =  107 bits (267), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 60/65 (92%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLSIEDIF 60
          MKN+LEA+RK +GIKQEELA ALEVSRQTI SLENGRYNPSI+LAFK+ARYF +SIE++F
Sbjct: 17 MKNRLEALRKARGIKQEELAAALEVSRQTIGSLENGRYNPSILLAFKIARYFDVSIEEVF 76

Query: 61 EYEEE 65
           YEEE
Sbjct: 77 IYEEE 81


>C0MEJ1.1 C0MEJ1_STRS7 Putative transcriptional regulator
          Length = 65

 Score =  106 bits (264), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 57/65 (87%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLSIEDIF 60
          MKN+LE IRK+ GI QEELA  LEVSRQTI SLENGRYNPSIILAFK+A+YF LSIEDIF
Sbjct: 1  MKNRLEEIRKENGITQEELASILEVSRQTIGSLENGRYNPSIILAFKIAKYFSLSIEDIF 60

Query: 61 EYEEE 65
           YEEE
Sbjct: 61 IYEEE 65


>C0M739.1 C0M739_STRE4 Putative transcriptional regulator
          Length = 65

 Score =  106 bits (264), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 57/65 (87%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLSIEDIF 60
          MKN+LE IRK+ GI QEELA  LEVSRQTI SLENGRYNPSIILAFK+A+YF LSIEDIF
Sbjct: 1  MKNRLEEIRKENGITQEELASILEVSRQTIGSLENGRYNPSIILAFKIAKYFSLSIEDIF 60

Query: 61 EYEEE 65
           YEEE
Sbjct: 61 IYEEE 65


>B1KXN7.1 B1KXN7_CLOBM HTH DNA-binding protein
          Length = 65

 Score =  105 bits (263), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 58/65 (89%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLSIEDIF 60
          MKNKLE IRK++GI QEELA+ LEVSRQTI SLENGRYNPSIILAFK+ARYF  +IEDIF
Sbjct: 1  MKNKLEEIRKERGINQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIF 60

Query: 61 EYEEE 65
           YEEE
Sbjct: 61 IYEEE 65


>Q467Q5.1 Q467Q5_METBF Putative uncharacterized protein
          Length = 67

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 51/55 (92%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLS 55
          MKN+LE +RKQ+GIKQEELAEALEVSRQTI SLENGRYNPSIILAFKLARYF  +
Sbjct: 1  MKNRLEILRKQKGIKQEELAEALEVSRQTIGSLENGRYNPSIILAFKLARYFNTT 55


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.134    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 332,872,213
Number of extensions: 9445454
Number of successful extensions: 47584
Number of sequences better than 1.0e-05: 1090
Number of HSP's gapped: 47632
Number of HSP's successfully gapped: 1090
Length of query: 66
Length of database: 3,060,696,203
Length adjustment: 38
Effective length of query: 28
Effective length of database: 2,702,697,633
Effective search space: 75675533724
Effective search space used: 75675533724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)