BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0573.0001.p
         (182 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B5EU39.1 B5EU39_VIBFM Putative uncharacterized protein                140   7e-32
Q2C945.1 Q2C945_9GAMM Putative uncharacterized protein                 88   4e-16
Q1ZM84.1 Q1ZM84_9VIBR Putative uncharacterized protein                 86   1e-15

>B5EU39.1 B5EU39_VIBFM Putative uncharacterized protein
          Length = 176

 Score =  140 bits (352), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 108/177 (61%), Gaps = 3/177 (1%)

Query: 1   MGLNYQKLDQKVRAYMLDELKIDIEAATVYISERLNSIGKASYIDFLRDAMESGNDTTLA 60
           M + Y+ LD   R YM  E+ +D E A VY S+ L +  +  + D +  A    +D+ L 
Sbjct: 1   MSIQYENLDATTRDYMRSEINLDFENAQVYYSKYLKNGLQDLWDDLILSAANEHDDSWLE 60

Query: 61  SVIRNGHL--NAKESRRTKNGVTLVSVPVTAADTLSEGEFNRYYIRALCREVIEEEQGQL 118
           + I+  ++  ++ + R+   G T+  VP TA  TL+EGEFNR Y R LC   IEE + ++
Sbjct: 61  NQIKTKNMLVDSYQKRKPSGGFTVAKVPYTAPQTLAEGEFNRLYCRGLCSRAIEEGK-KV 119

Query: 119 VVYRAKAVSSPRIESEMKIGTIVDARSLLRDLRSNIGVDTALGLPAGPNSGLSVRIV 175
            VYR K+V++ R  S+  IG I+D + LL DLR NIGVD A  LP+GPNSGL++++V
Sbjct: 120 QVYRGKSVTNARSASQAMIGQIMDPKLLLEDLRVNIGVDPAFKLPSGPNSGLTIKLV 176


>Q2C945.1 Q2C945_9GAMM Putative uncharacterized protein
          Length = 155

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 3/156 (1%)

Query: 22  IDIEAATVYISERLNSIGKASYIDFLRDAMESGNDTTLAS-VIRNGHLNAKESRRTKNG- 79
           +DIE+  VY SE L    + ++   L  A+++ +D  L + +I    L  K  +  KNG 
Sbjct: 1   MDIESDNVYYSEFLKYGYEDAWEKTLFCAIKNHDDIWLENHIISQKFLLEKYHKLKKNGG 60

Query: 80  VTLVSVPVTAADTLSEGEFNRYYIRALCREVIEEEQGQLVVYRAKAVSSPRIESEMKIGT 139
                 P   A  L+E EFNR+Y RA+C   I+E++ ++ +YR K +    I+S+  IG 
Sbjct: 61  FIKTKTPQEKALQLAEAEFNRFYCRAICSRAIKEDK-KVKIYRGKKILETSIKSKNMIGH 119

Query: 140 IVDARSLLRDLRSNIGVDTALGLPAGPNSGLSVRIV 175
           ++ A+ +L +LR  + V+T LGLP   N+GL++ ++
Sbjct: 120 VLSAQEILNELREEVSVNTVLGLPNETNTGLTICLI 155


>Q1ZM84.1 Q1ZM84_9VIBR Putative uncharacterized protein
          Length = 155

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 3/156 (1%)

Query: 22  IDIEAATVYISERLNSIGKASYIDFLRDAMESGNDTTLAS-VIRNGHLNAKESRRTKNG- 79
           +DIE+  VY SE L    + ++   L  A+++ +D  L + +I    L  K  +  KNG 
Sbjct: 1   MDIESDNVYYSEFLKYGYEDAWEKTLFCAIKNYDDIWLENHIISQKFLLEKYHKLKKNGG 60

Query: 80  VTLVSVPVTAADTLSEGEFNRYYIRALCREVIEEEQGQLVVYRAKAVSSPRIESEMKIGT 139
                 P   A  L+E EFNR+Y RA+C   I+E++ ++ +YR K +    I+S+  IG 
Sbjct: 61  FIKTKTPQEKALQLAEAEFNRFYCRAICIRAIKEDK-KVKIYRGKKILETSIKSKNMIGH 119

Query: 140 IVDARSLLRDLRSNIGVDTALGLPAGPNSGLSVRIV 175
           ++ A+ +L +LR  + V+T LGLP   N+GL++ ++
Sbjct: 120 VLSAQEILNELREEVSVNTVLGLPNETNTGLTICLI 155


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 960,774,709
Number of extensions: 35782671
Number of successful extensions: 112516
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 112514
Number of HSP's successfully gapped: 3
Length of query: 182
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 55
Effective length of database: 1,864,227,298
Effective search space: 102532501390
Effective search space used: 102532501390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)