BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0030.p (182 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6K1.1 B1D6K1_9BACL Ribonuclease BN 137 4e-31 A3DHF7.1 A3DHF7_CLOTH Putative ribonuclease BN 134 4e-30 B4BC75.1 B4BC75_CLOTM Ribonuclease BN 134 4e-30 B1B745.1 B1B745_CLOBO Ribonuclease BN 131 3e-29 C0GIF6.1 C0GIF6_9FIRM Ribonuclease BN 130 5e-29 >B1D6K1.1 B1D6K1_9BACL Ribonuclease BN Length = 296 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 106/175 (60%) Query: 1 MLGTLWAASKGINAIIKGLNRAYDIEESRVFWKIRGIAFLATXXXXXXXXXXXXXXXXXT 60 M+ TLW+AS G+NAIIKG+N+AYD+EE+R FWK+R I+ AT Sbjct: 95 MIATLWSASNGVNAIIKGVNKAYDVEENRPFWKVRAISLAATLVLALAILLAIVLLIFGE 154 Query: 61 WLKTQVFLLIDLPYGFQKIWDLLQYAVPLFVMFLVFTLLYWIAPSRRLTLKEVMPGAMFA 120 + +F D P F+ IW +L+Y P+ M +VF+LLYWI P+ ++ K V PGA+FA Sbjct: 155 VIGEFLFDWFDSPVSFELIWGILKYVFPISFMLVVFSLLYWIVPNHKIRFKTVFPGALFA 214 Query: 121 TLGWIITSILFSVYVNQFSNFTETYGSLGGVMXXXXXXXXXXXXXXAGGEINAIL 175 T GWI +S+LF Y+N F N+++TYGS+GG++ GGE+NA L Sbjct: 215 TFGWIASSLLFQFYINNFGNYSKTYGSIGGIIILLIWLYISSNIIILGGEVNATL 269 >A3DHF7.1 A3DHF7_CLOTH Putative ribonuclease BN Length = 276 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 106/178 (59%) Query: 1 MLGTLWAASKGINAIIKGLNRAYDIEESRVFWKIRGIAFLATXXXXXXXXXXXXXXXXXT 60 M+ LWA+S G+ A+I+G+N+AYD +E+R FW +R I+ +A Sbjct: 97 MIAALWASSNGMKAVIRGINKAYDQKETRPFWMVRLISLVAVIILAFTVIFSLALLLFGE 156 Query: 61 WLKTQVFLLIDLPYGFQKIWDLLQYAVPLFVMFLVFTLLYWIAPSRRLTLKEVMPGAMFA 120 + ++F P ++ + +++ +P+ +MF VF LLY + PSRRL+LKEV+PG+ F+ Sbjct: 157 TAEKELFYHFRFPNIYRGVCTTVRFLLPVILMFCVFILLYMLTPSRRLSLKEVLPGSAFS 216 Query: 121 TLGWIITSILFSVYVNQFSNFTETYGSLGGVMXXXXXXXXXXXXXXAGGEINAILMKR 178 L WI+ + LFS+Y+N F++F++ YGS+GG++ GGE+NA L ++ Sbjct: 217 ALSWILVTTLFSLYINNFADFSKMYGSIGGIIALLVWLYWISIIIMLGGELNASLAQK 274 >B4BC75.1 B4BC75_CLOTM Ribonuclease BN Length = 276 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 106/178 (59%) Query: 1 MLGTLWAASKGINAIIKGLNRAYDIEESRVFWKIRGIAFLATXXXXXXXXXXXXXXXXXT 60 M+ LWA+S G+ A+I+G+N+AYD +E+R FW +R I+ +A Sbjct: 97 MIAALWASSNGMKAVIRGINKAYDQKETRPFWMVRLISLVAVIILAFTVIFSLALLLFGE 156 Query: 61 WLKTQVFLLIDLPYGFQKIWDLLQYAVPLFVMFLVFTLLYWIAPSRRLTLKEVMPGAMFA 120 + ++F P ++ + +++ +P+ +MF VF LLY + PSRRL+LKEV+PG+ F+ Sbjct: 157 TAEKELFYHFRFPNIYRGVCTTVRFLLPVILMFCVFILLYMLTPSRRLSLKEVLPGSAFS 216 Query: 121 TLGWIITSILFSVYVNQFSNFTETYGSLGGVMXXXXXXXXXXXXXXAGGEINAILMKR 178 L WI+ + LFS+Y+N F++F++ YGS+GG++ GGE+NA L ++ Sbjct: 217 ALSWILVTTLFSLYINNFADFSKMYGSIGGIIALLVWLYWISIIIMLGGELNASLAQK 274 >B1B745.1 B1B745_CLOBO Ribonuclease BN Length = 271 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 99/175 (56%) Query: 4 TLWAASKGINAIIKGLNRAYDIEESRVFWKIRGIAFLATXXXXXXXXXXXXXXXXXTWLK 63 T+W AS G A+I+ LN+AY EE R F KI+ + ++T + Sbjct: 97 TIWIASNGFKAVIRALNKAYGEEEERSFIKIQFMGIISTVILTFLIIFSLFILVLGNIIG 156 Query: 64 TQVFLLIDLPYGFQKIWDLLQYAVPLFVMFLVFTLLYWIAPSRRLTLKEVMPGAMFATLG 123 ++ ++ LP IW++L+Y V L M ++F ++Y I P R+LT K+V+PGA+FAT+G Sbjct: 157 LKIITMLSLPISLYFIWNVLRYFVMLIFMIIIFAIVYKITPCRKLTFKDVLPGAIFATIG 216 Query: 124 WIITSILFSVYVNQFSNFTETYGSLGGVMXXXXXXXXXXXXXXAGGEINAILMKR 178 WII S+ FS YV+ F+N++ YGS+G V+ GGEINAIL+ Sbjct: 217 WIIVSLGFSFYVDNFANYSRLYGSIGAVIVLLVWLFLSSIIILIGGEINAILLNE 271 >C0GIF6.1 C0GIF6_9FIRM Ribonuclease BN Length = 281 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 101/181 (55%) Query: 1 MLGTLWAASKGINAIIKGLNRAYDIEESRVFWKIRGIAFLATXXXXXXXXXXXXXXXXXT 60 +LGT+W AS+G A+IK LN+AYDI ESR F+ + I AT Sbjct: 92 ILGTIWTASRGTAALIKSLNKAYDITESRSFFVLNTIGIAATLALALLILFTLSFLVFGQ 151 Query: 61 WLKTQVFLLIDLPYGFQKIWDLLQYAVPLFVMFLVFTLLYWIAPSRRLTLKEVMPGAMFA 120 + F + L FQ +W +L++++PL ++F+ FTLL+ +P+ RL L+ V PGA+F+ Sbjct: 152 VIGELAFQYLGLEGLFQALWPVLRFSIPLLIIFVSFTLLFLYSPNCRLRLRHVYPGAIFS 211 Query: 121 TLGWIITSILFSVYVNQFSNFTETYGSLGGVMXXXXXXXXXXXXXXAGGEINAILMKRSL 180 TL WII S F+ YVN F NF+ TYGS+GG++ GGEINA L Sbjct: 212 TLAWIIASQAFAFYVNNFGNFSRTYGSIGGIIVFMIWLYLSSVVVLLGGEINATLYNSFC 271 Query: 181 K 181 K Sbjct: 272 K 272 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 880,618,452 Number of extensions: 28051043 Number of successful extensions: 95990 Number of sequences better than 1.0e-05: 498 Number of HSP's gapped: 95605 Number of HSP's successfully gapped: 498 Length of query: 182 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 55 Effective length of database: 1,864,227,298 Effective search space: 102532501390 Effective search space used: 102532501390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)