BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0025.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D5Y4.1 B1D5Y4_9BACL Binding-protein-dependent transport system... 382 e-104 B3KF75.1 B3KF75_9BACI Binding-protein-dependent transport system... 376 e-102 B3KFT0.1 B3KFT0_9BACI Binding-protein-dependent transport system... 285 2e-75 B3K6J0.1 B3K6J0_9BACI Binding-protein-dependent transport system... 264 8e-69 A0K070.1 A0K070_ARTS2 Binding-protein-dependent transport system... 239 3e-61 >B1D5Y4.1 B1D5Y4_9BACL Binding-protein-dependent transport systems inner membrane component Length = 290 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/291 (64%), Positives = 235/291 (80%), Gaps = 1/291 (0%) Query: 1 MTKRTKGDLLLDIGVYAFXXXXXXXXXXXXXSVFSKAVSEEWAITSGKVGILPVGFQLDT 60 M R GD +LDI +Y +V SK+VSEEWAITSGKV +LP+GFQLDT Sbjct: 1 MHSRKIGDYVLDIFIYVVLIAMGVSTLVPFITVLSKSVSEEWAITSGKVNLLPIGFQLDT 60 Query: 61 LMQVISSSVFIRAFCISVGVTAVGTIISILMTALTAYPLSKRNLPGISFCMVLFIFTMLF 120 L V++++ F+ A ISV V +GT+ S+++TA+TAYPLSKR LPG+ +VLF+FTM+F Sbjct: 61 LKYVVTNNQFLHALLISVLVALIGTLASLIVTAMTAYPLSKRELPGVGVIIVLFVFTMMF 120 Query: 121 SGGLIPNYLLMRQLHLVDNLWVLILPGMISVFNMLVIKSYYESLPEALEESARIDGAKTY 180 +GG+IP+YLL+RQL L+DNL LILPG+ISVFNMLVIKSY+ESLP +LEESA++DGA+ Y Sbjct: 121 NGGIIPSYLLIRQLDLIDNLASLILPGLISVFNMLVIKSYFESLPPSLEESAKLDGARNY 180 Query: 181 TILFRIILPLSMPVIATIALFYAVGYWNDYFGPMIYINDTALKTLQLYLQDVVMDANNAN 240 TILFRIILPLS PV+ATI LFYAV YWNDYF PM+YIN T+LK LQLYLQD+VM+A++++ Sbjct: 181 TILFRIILPLSGPVLATIGLFYAVYYWNDYFNPMLYINSTSLKPLQLYLQDIVMNADSSS 240 Query: 241 LTNKSIDDLMNMSPEGIRAATVVASTVPILLVYPFMQKYFIKGVLIGSVKG 291 S +D MN+ EG+RAATV+AST+PILLVYPF+QKYFIKGVLIGSVKG Sbjct: 241 F-KMSAEDRMNVPAEGVRAATVIASTIPILLVYPFLQKYFIKGVLIGSVKG 290 >B3KF75.1 B3KF75_9BACI Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/291 (62%), Positives = 235/291 (80%) Query: 1 MTKRTKGDLLLDIGVYAFXXXXXXXXXXXXXSVFSKAVSEEWAITSGKVGILPVGFQLDT 60 M ++T D +LD +Y +VFSK++SEEWAI SG+VGI PVGFQL+T Sbjct: 1 MYRKTVKDFMLDGSIYVLLIAMGLITLLPFVNVFSKSISEEWAILSGQVGIFPVGFQLET 60 Query: 61 LMQVISSSVFIRAFCISVGVTAVGTIISILMTALTAYPLSKRNLPGISFCMVLFIFTMLF 120 + V+++S F+ + ISV +T +GT+ S+L+TALTAYPLSKR LPG+ ++LFIFTM+F Sbjct: 61 MKFVVTNSQFLNSLWISVLITVIGTLASLLITALTAYPLSKRELPGMGIIIILFIFTMMF 120 Query: 121 SGGLIPNYLLMRQLHLVDNLWVLILPGMISVFNMLVIKSYYESLPEALEESARIDGAKTY 180 +GG+IPNYLL+R+L L+++L LILP +ISVFNMLVIKSY+ESLP +LEESA+I+GA Sbjct: 121 NGGIIPNYLLIRELGLINHLGSLILPALISVFNMLVIKSYFESLPASLEESAKIEGASNL 180 Query: 181 TILFRIILPLSMPVIATIALFYAVGYWNDYFGPMIYINDTALKTLQLYLQDVVMDANNAN 240 T+LFRIILPLS PV+ATI LFYAV YWNDYF PM+YIN ++LK LQLYLQD+VM+A+ ++ Sbjct: 181 TVLFRIILPLSGPVLATIGLFYAVYYWNDYFNPMLYINSSSLKPLQLYLQDIVMNADTSS 240 Query: 241 LTNKSIDDLMNMSPEGIRAATVVASTVPILLVYPFMQKYFIKGVLIGSVKG 291 +K+ DDLMN+ EG+R+ATV+AST+PILLVYPF+QKYFIKGVLIGSVKG Sbjct: 241 ALDKTADDLMNVPAEGVRSATVIASTIPILLVYPFLQKYFIKGVLIGSVKG 291 >B3KFT0.1 B3KFT0_9BACI Binding-protein-dependent transport systems inner membrane component Length = 305 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 134/257 (52%), Positives = 199/257 (77%), Gaps = 1/257 (0%) Query: 35 SKAVSEEWAITSGKVGILPVGFQLDTLMQVISSSVFIRAFCISVGVTAVGTIISILMTAL 94 +K++S E A+ SGKVG+LPVG Q +T V+ S+F+ + +S+ +T +GT S+ +T L Sbjct: 50 AKSLSSEGAVISGKVGLLPVGVQFETYKYVLQDSMFLNSLKVSIFLTIIGTACSLFLTTL 109 Query: 95 TAYPLSKRNLPGISFCMVLFIFTMLFSGGLIPNYLLMRQLHLVDNLWVLILPGMISVFNM 154 TAYPLSK L G +++F+FTMLFSGGLIP YLLM+ L+LV++ VL LP M++V+NM Sbjct: 110 TAYPLSKYRLRGRKGLLLIFVFTMLFSGGLIPTYLLMQNLNLVNSFPVLFLPAMVNVYNM 169 Query: 155 LVIKSYYESLPEALEESARIDGAKTYTILFRIILPLSMPVIATIALFYAVGYWNDYFGPM 214 L+IK+Y+E LP+ LEESA++DGA IL +I+PLS+PV+ATI LF+AV +WNDYF M Sbjct: 170 LIIKNYFEGLPDELEESAKLDGAGNIRILVSVIVPLSLPVMATIGLFFAVAFWNDYFAAM 229 Query: 215 IYINDTALKTLQLYLQDVVMDANNANLTNKSIDDLMNMSPEGIRAATVVASTVPILLVYP 274 IYI D A+K +QLYL+++++ +++ + ++D +N +P+ I+A++++ +T+PILLVYP Sbjct: 230 IYITDPAIKPMQLYLKELLV-SSSGDFLKDNVDAAINATPQSIQASSILLATIPILLVYP 288 Query: 275 FMQKYFIKGVLIGSVKG 291 F+QKYF+KGVL+GSVKG Sbjct: 289 FLQKYFVKGVLVGSVKG 305 >B3K6J0.1 B3K6J0_9BACI Binding-protein-dependent transport systems inner membrane component Length = 289 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 124/259 (47%), Positives = 193/259 (74%), Gaps = 1/259 (0%) Query: 33 VFSKAVSEEWAITSGKVGILPVGFQLDTLMQVISSSVFIRAFCISVGVTAVGTIISILMT 92 + +++ S AI SG+V LPV + + ++V + F+++F +SV T VGT+IS++MT Sbjct: 32 ILAQSFSSYRAIVSGEVSFLPVEWTTEAYVKVFNDPGFVQSFLVSVQRTVVGTLISVVMT 91 Query: 93 ALTAYPLSKRNLPGISFCMVLFIFTMLFSGGLIPNYLLMRQLHLVDNLWVLILPGMISVF 152 L AYPLS+ + G M L +FTMLFSGG+IP YL++++LHL++ W ++PG ++ F Sbjct: 92 MLLAYPLSRYYIKGRGPIMFLIVFTMLFSGGMIPTYLVIKELHLMNTFWAYVIPGAVNAF 151 Query: 153 NMLVIKSYYESLPEALEESARIDGAKTYTILFRIILPLSMPVIATIALFYAVGYWNDYFG 212 +++++K++++S+P LEESARIDG+ ILFRI++PLSMPVIATIALF AVG WN +F Sbjct: 152 HVVIMKNFFQSIPNELEESARIDGSSNLGILFRIVVPLSMPVIATIALFNAVGQWNSFFD 211 Query: 213 PMIYINDTALKTLQLYLQDVVMDANNANLTNKSIDDLMNMSPEGIRAATVVASTVPILLV 272 ++Y+ D++LK LQ+YL+++VM + T S++ + ++ E ++AA ++AST+PILLV Sbjct: 212 AVMYVTDSSLKPLQIYLRELVMSGQSNINTTDSLERQL-LAVESLKAAALIASTLPILLV 270 Query: 273 YPFMQKYFIKGVLIGSVKG 291 YPF+QKYF+KG++IGSVKG Sbjct: 271 YPFLQKYFVKGIMIGSVKG 289 >A0K070.1 A0K070_ARTS2 Binding-protein-dependent transport systems inner membrane component Length = 290 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 184/289 (63%), Gaps = 2/289 (0%) Query: 3 KRTKGDLLLDIGVYAFXXXXXXXXXXXXXSVFSKAVSEEWAITSGKVGILPVGFQLDTLM 62 T G + D Y F VF+ + + E IT + P F L + Sbjct: 4 HNTTGGRIFDGANYVFLTLIGVLTLLPFIYVFAGSFATEAEITRRAFFVWPEQFSLGSYE 63 Query: 63 QVISSSVFIRAFCISVGVTAVGTIISILMTALTAYPLSKRNLPGISFCMVLFIFTMLFSG 122 + S+ F+RA +V VTAVGT+I +++T AYPL+KRNL G + L +F M+FSG Sbjct: 64 YIFSTPAFVRALITTVLVTAVGTVIQLILTVTMAYPLAKRNLRGRQLILSLVVFAMVFSG 123 Query: 123 GLIPNYLLMRQLHLVDNLWVLILPGMISVFNMLVIKSYYESLPEALEESARIDGAKTYTI 182 G+IP +LL++ L L+++ W LILP I+ F++++IK++++ LP LEESA++DGA I Sbjct: 124 GMIPTFLLIKDLGLLNSYWALILPAAINPFSLIIIKNFFQELPAELEESAKMDGATEIGI 183 Query: 183 LFRIILPLSMPVIATIALFYAVGYWNDYFGPMIYINDTALKTLQLYLQDVVMDANNANLT 242 L+RI+LPLS PV+AT ALFYAVG WND+ P++Y++D + TLQ+YL+ V A++ L Sbjct: 184 LWRILLPLSKPVLATFALFYAVGIWNDFMSPLLYLSDNSKWTLQMYLRQVT--ASSDLLG 241 Query: 243 NKSIDDLMNMSPEGIRAATVVASTVPILLVYPFMQKYFIKGVLIGSVKG 291 ++D +GI+ A +V +T+PIL+ YPF+QK+F KG+LIGSVKG Sbjct: 242 TGNVDPNYIPPEQGIKFAVIVVATLPILIFYPFLQKHFAKGMLIGSVKG 290 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,509,303,124 Number of extensions: 56841966 Number of successful extensions: 229602 Number of sequences better than 1.0e-05: 5578 Number of HSP's gapped: 222023 Number of HSP's successfully gapped: 5578 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)