BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0024.p (323 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF74.1 B3KF74_9BACI Binding-protein-dependent transport system... 431 e-119 B1D5Y5.1 B1D5Y5_9BACL Binding-protein-dependent transport system... 410 e-113 B3KFS9.1 B3KFS9_9BACI Binding-protein-dependent transport system... 348 3e-94 A9KRV2.1 A9KRV2_CLOPH Binding-protein-dependent transport system... 317 1e-84 B3K6J1.1 B3K6J1_9BACI Binding-protein-dependent transport system... 303 1e-80 >B3KF74.1 B3KF74_9BACI Binding-protein-dependent transport systems inner membrane component Length = 288 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 210/267 (78%), Positives = 241/267 (90%) Query: 57 GVLIAFQDFNIFDGIRGSEWVGLEQFHKLVQSEEFGQVFMNTLLISVYKIVLLFPVPIVI 116 G++IAFQDFNIF GI GSEWVG+ QF +L+QS+EF QV +NTLLIS+YKI +LFP+PIVI Sbjct: 22 GIVIAFQDFNIFGGISGSEWVGMAQFERLLQSDEFLQVLVNTLLISLYKITILFPIPIVI 81 Query: 117 ALVLNEVRLMFFKRTIQTIIYLPHFLSWVIISGLFVTILSTSGGLVNNIIQWFGGEPVSF 176 AL+LNEVR MFFKRTIQTIIYLPHFLSWVIISGLF+ ILS +GG+VN II+ FGGEP+SF Sbjct: 82 ALMLNEVRRMFFKRTIQTIIYLPHFLSWVIISGLFLNILSPTGGIVNEIIRSFGGEPISF 141 Query: 177 FVSNQYFRSLVVFTAGWKEVGWNAIVFIAAIAGIDQEQYEAASIDGAGRIRRMLHISLPG 236 F N FRSLVVFTAGWKE+GWNAIVFIAAIAGI+QEQYEAA+IDGAGRIR+M ISLPG Sbjct: 142 FTDNSLFRSLVVFTAGWKEIGWNAIVFIAAIAGIEQEQYEAAAIDGAGRIRQMWSISLPG 201 Query: 237 ILPTVVLMFILRLGSVLDAGTEQILTMYNPVVYETADVIGTFVYRIGLGKMDYSFSTAVG 296 +LPT+VLMFILR+GS+L+AGTEQILTMYNP+VYET DVIGT+VYR+GLG+ DYSFSTAVG Sbjct: 202 MLPTIVLMFILRIGSLLEAGTEQILTMYNPLVYETGDVIGTYVYRMGLGQQDYSFSTAVG 261 Query: 297 LFNSVVGFILIVSGNYISRKLLKRGIW 323 LFNS VGF+LIV GN +SRK L R IW Sbjct: 262 LFNSAVGFLLIVMGNMLSRKFLNRSIW 288 >B1D5Y5.1 B1D5Y5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 303 Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/298 (70%), Positives = 249/298 (83%) Query: 26 KWRIAWRNRDXXXXXXXXXXXXXXXXXXXXXGVLIAFQDFNIFDGIRGSEWVGLEQFHKL 85 +W++A N D GV+IAFQDFNIF GI GSEWVGL+QF KL Sbjct: 6 RWKLARSNWDMYLLLVPGLIFLLLFKYTPMYGVVIAFQDFNIFSGIGGSEWVGLDQFQKL 65 Query: 86 VQSEEFGQVFMNTLLISVYKIVLLFPVPIVIALVLNEVRLMFFKRTIQTIIYLPHFLSWV 145 V S++F +V NTLLIS+YKIVLLFP+PIV+AL+LNEVR M FKRTIQTIIYLPHFLSWV Sbjct: 66 VHSDDFTRVLTNTLLISLYKIVLLFPIPIVVALLLNEVRKMMFKRTIQTIIYLPHFLSWV 125 Query: 146 IISGLFVTILSTSGGLVNNIIQWFGGEPVSFFVSNQYFRSLVVFTAGWKEVGWNAIVFIA 205 IISGLFVT+LS + GLVN II FGG+P+SF N +FRS+VVFTAGWKE+GWNAI+FIA Sbjct: 126 IISGLFVTLLSPTDGLVNQIITLFGGKPISFLQDNSFFRSVVVFTAGWKEIGWNAIIFIA 185 Query: 206 AIAGIDQEQYEAASIDGAGRIRRMLHISLPGILPTVVLMFILRLGSVLDAGTEQILTMYN 265 AIAGIDQEQYEAASIDGAGRIR+M+ I+LPGI+PT++LM ILR+GS+L+AGTEQILTMYN Sbjct: 186 AIAGIDQEQYEAASIDGAGRIRKMISITLPGIMPTIILMLILRIGSLLEAGTEQILTMYN 245 Query: 266 PVVYETADVIGTFVYRIGLGKMDYSFSTAVGLFNSVVGFILIVSGNYISRKLLKRGIW 323 P+VY++ DVIGT+VYR+GLG+ DYSFSTAVGLFNS+VGFILI+SGN +S+K LKR IW Sbjct: 246 PLVYDSGDVIGTYVYRMGLGQQDYSFSTAVGLFNSLVGFILIISGNMLSKKFLKRSIW 303 >B3KFS9.1 B3KFS9_9BACI Binding-protein-dependent transport systems inner membrane component Length = 322 Score = 348 bits (894), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 167/267 (62%), Positives = 213/267 (79%) Query: 57 GVLIAFQDFNIFDGIRGSEWVGLEQFHKLVQSEEFGQVFMNTLLISVYKIVLLFPVPIVI 116 G+ IAF+DFNIF G S WVG + F KL S +F QVF NT++IS KIV+LFP+PI+I Sbjct: 56 GITIAFKDFNIFTGFADSPWVGWKHFEKLFTSPDFAQVFKNTVIISFLKIVILFPLPIII 115 Query: 117 ALVLNEVRLMFFKRTIQTIIYLPHFLSWVIISGLFVTILSTSGGLVNNIIQWFGGEPVSF 176 AL+LNE+R M FKRT+QT+IYLPHFLSWVI+ GLF+ +LST+GG+VN ++ G E ++F Sbjct: 116 ALMLNELRHMVFKRTVQTVIYLPHFLSWVIVGGLFIDLLSTNGGIVNKLLVSLGMEQIAF 175 Query: 177 FVSNQYFRSLVVFTAGWKEVGWNAIVFIAAIAGIDQEQYEAASIDGAGRIRRMLHISLPG 236 F+ N FRS+++ +AGWKE GW+ IV++AA ID YEAA IDGAGR +++ HI+LPG Sbjct: 176 FLDNSVFRSVLITSAGWKETGWSTIVYLAAFTMIDPMLYEAAKIDGAGRWKQLWHITLPG 235 Query: 237 ILPTVVLMFILRLGSVLDAGTEQILTMYNPVVYETADVIGTFVYRIGLGKMDYSFSTAVG 296 I P +VLMFILRLG+VL+AGTEQIL MYNPVVY+ +DVIGT+VYR GLG DYSFSTAVG Sbjct: 236 IAPIIVLMFILRLGNVLEAGTEQILVMYNPVVYQVSDVIGTYVYRQGLGNQDYSFSTAVG 295 Query: 297 LFNSVVGFILIVSGNYISRKLLKRGIW 323 LF +V+ F L++ GN +SRK L+RGIW Sbjct: 296 LFEAVISFTLVIIGNAMSRKYLQRGIW 322 >A9KRV2.1 A9KRV2_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 310 Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 150/267 (56%), Positives = 204/267 (76%), Gaps = 1/267 (0%) Query: 57 GVLIAFQDFNIFDGIRGSEWVGLEQFHKLVQSEEFGQVFMNTLLISVYKIVLLFPVPIVI 116 G+ IAF+DFNIF+G SEWVGL+ F L F +V NTL IS KI++LFP+PI++ Sbjct: 45 GIAIAFKDFNIFEGFFASEWVGLDHFKALFTQPRFLKVLSNTLEISFLKILILFPLPIIL 104 Query: 117 ALVLNEVRLMFFKRTIQTIIYLPHFLSWVIISGLFVTILSTSGGLVNNIIQWFGGEPVSF 176 A++LNE+R +K+T+QT+IYLPHFLS+VII GLF LST GG+VN ++Q G P++F Sbjct: 105 AIMLNEMRNRHYKKTVQTLIYLPHFLSFVIIHGLFTNFLSTQGGMVNELLQAIGIGPINF 164 Query: 177 FVSNQYFRSLVVFTAGWKEVGWNAIVFIAAIAGIDQEQYEAASIDGAGRIRRMLHISLPG 236 + SN +FR +++ T G+KEVGW IV++AA+AG+D + YEAA +DGAG++R+M+ I+LP Sbjct: 165 Y-SNSWFRFVILLTEGFKEVGWGTIVYLAALAGVDPQLYEAAEVDGAGKLRQMISITLPS 223 Query: 237 ILPTVVLMFILRLGSVLDAGTEQILTMYNPVVYETADVIGTFVYRIGLGKMDYSFSTAVG 296 I+P + LM LR+G++LDAGTEQIL MYN VY+TAD+IGT VYR G+G Y F+TAVG Sbjct: 224 IIPIIALMLTLRVGNILDAGTEQILVMYNSSVYDTADIIGTLVYREGIGNAQYGFATAVG 283 Query: 297 LFNSVVGFILIVSGNYISRKLLKRGIW 323 LFNS+ FILI++ N S K+ KRG+W Sbjct: 284 LFNSIASFILIMTANTFSSKVFKRGLW 310 >B3K6J1.1 B3K6J1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 322 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 140/267 (52%), Positives = 204/267 (76%) Query: 57 GVLIAFQDFNIFDGIRGSEWVGLEQFHKLVQSEEFGQVFMNTLLISVYKIVLLFPVPIVI 116 G++IAF+D++IF G SEWVGL+ F +L +F QVF NT++IS+YK++ FP PI++ Sbjct: 56 GIVIAFKDYSIFAGFNASEWVGLDHFVRLFHDTQFYQVFWNTVIISLYKLIWGFPGPIIL 115 Query: 117 ALVLNEVRLMFFKRTIQTIIYLPHFLSWVIISGLFVTILSTSGGLVNNIIQWFGGEPVSF 176 AL+LNE+R MF+KRTIQT+ YLPHFLSW+I+ G+ V +LS + G VN I++W G EPV F Sbjct: 116 ALLLNEIRSMFYKRTIQTLAYLPHFLSWIILGGILVNVLSPATGAVNEIMKWLGFEPVFF 175 Query: 177 FVSNQYFRSLVVFTAGWKEVGWNAIVFIAAIAGIDQEQYEAASIDGAGRIRRMLHISLPG 236 +FRS++V + WKEVGW AI+++AA+AGIDQ+QYEAA +DGAG+ +++ H++LP Sbjct: 176 LADPAWFRSVLVISDIWKEVGWGAIIYLAALAGIDQQQYEAAVMDGAGKWKQLWHVTLPS 235 Query: 237 ILPTVVLMFILRLGSVLDAGTEQILTMYNPVVYETADVIGTFVYRIGLGKMDYSFSTAVG 296 I T++++F+LRLGS+LD G EQI +YN +VY+ ADVI T+VYRIG+G+ ++S+STAVG Sbjct: 236 IKGTIIVLFLLRLGSILDVGFEQIFVLYNSLVYDVADVIETYVYRIGIGQSEFSYSTAVG 295 Query: 297 LFNSVVGFILIVSGNYISRKLLKRGIW 323 L S + +L+V N ++ + GI+ Sbjct: 296 LLKSAISLVLVVIVNKAVKRTGQEGIY 322 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.145 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,699,507,412 Number of extensions: 67672130 Number of successful extensions: 247936 Number of sequences better than 1.0e-05: 4851 Number of HSP's gapped: 245206 Number of HSP's successfully gapped: 4851 Length of query: 323 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 187 Effective length of database: 1,779,438,163 Effective search space: 332754936481 Effective search space used: 332754936481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)