BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0015.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K543.1 B3K543_9BACI Binding-protein-dependent transport system... 315 3e-84 B3K5M7.1 B3K5M7_9BACI Binding-protein-dependent transport system... 309 2e-82 B3KH81.1 B3KH81_9BACI Binding-protein-dependent transport system... 308 3e-82 A4IP81.1 A4IP81_GEOTN Integral membrane protein 303 1e-80 B4BMD8.1 B4BMD8_9BACI Binding-protein-dependent transport system... 303 1e-80 >B3K543.1 B3K543_9BACI Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 151/296 (51%), Positives = 211/296 (71%), Gaps = 6/296 (2%) Query: 7 METANLSRRIFQIFNIIVLTFMAFLCLLPILNLVAVSFSSRSVVEANQVGLWPKGLNLSS 66 M + RIF +FN +L +A LC++P+L+++A+SFSS++ +A+ VGLWP +L + Sbjct: 1 MYHKTMEYRIFNVFNTCLLVALAILCIIPLLHVLAISFSSKAAADASLVGLWPVDFSLEA 60 Query: 67 YEYIFSNSQFFKSLWITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVWFFMVTM 126 Y+ +N F S+WI++ RTV G + L++T L AYPLSK NRVFR RS+Y W F+ +M Sbjct: 61 YKKTINNPAFLHSIWISIARTVLGTALTLAVTFLAAYPLSKENRVFRSRSVYSWLFVFSM 120 Query: 127 VFNGGLIPTYLVVNELHLVNSIWALILPEAIIMFNVLLLLNFFRAIPNELEEAALMDGAG 186 VFNGGL+P Y+V+ +L L+NS W L++P + F V+L+LNFFR IP ELEEAA +DGAG Sbjct: 121 VFNGGLVPFYIVIQKLGLINSFWVLVIPGTVNTFLVILMLNFFRGIPKELEEAAFIDGAG 180 Query: 187 WFVTLTRVYLPLSLPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTMVLNLDL 246 F TL ++YLP+SLPS+ATI LF +V HWNSWFDGL+Y+N +PL T+LQT+++ D+ Sbjct: 181 HFKTLFKIYLPISLPSIATIALFSMVFHWNSWFDGLLYLNNAKDFPLATFLQTVIIQRDM 240 Query: 247 SQLSSTALANNPSMLEITGR-SLRSAMILACTLPILLAYPFLQRFFVKGMLLGSVK 301 S +S + P +E+ + ++ +A I PILL YPFLQRFFVKGM LGSVK Sbjct: 241 SSMSMS-----PKEMELLSQTTVNAAQIFIGAAPILLVYPFLQRFFVKGMTLGSVK 291 >B3K5M7.1 B3K5M7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 295 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 144/295 (48%), Positives = 214/295 (72%), Gaps = 1/295 (0%) Query: 7 METANLSRRIFQIFNIIVLTFMAFLCLLPILNLVAVSFSSRSVVEANQVGLWPKGLNLSS 66 M +SRR+F I N +VL+ + L ++P ++L+++S SS + A +V LWP G NL + Sbjct: 1 MHKPTISRRLFVITNTLVLSLITLLGIIPFVHLLSISLSSNTAAMAGEVRLWPVGFNLDA 60 Query: 67 YEYIFSNSQFFKSLWITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVWFFMVTM 126 Y Y+ +FF+S +++ R V G V + L + AYPLSK+N F+ R+ YVWFF +TM Sbjct: 61 YRYLGEKVEFFRSFRVSLTRVVLGTAVNMLLVFITAYPLSKSNHQFKFRTPYVWFFAITM 120 Query: 127 VFNGGLIPTYLVVNELHLVNSIWALILPEAIIMFNVLLLLNFFRAIPNELEEAALMDGAG 186 F GGLIPTY+VV L++S+WALILP A+ ++N++L+LNFFR IP ELEEAA +DGAG Sbjct: 121 FFGGGLIPTYMVVKNTGLIDSVWALILPGALNVWNMVLMLNFFRTIPKELEEAATIDGAG 180 Query: 187 WFVTLTRVYLPLSLPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTMVLNLDL 246 + L R+YLP+SLPS+ATI LF +V HWN+WFDG++Y+N P++YPL TYL T++++++ Sbjct: 181 HWRILWRIYLPVSLPSIATIGLFTIVGHWNAWFDGILYLNSPEKYPLQTYLSTLIMSIN- 239 Query: 247 SQLSSTALANNPSMLEITGRSLRSAMILACTLPILLAYPFLQRFFVKGMLLGSVK 301 SQ++S ++ +M ++ ++LR+A I LPI++ YPFLQ++FVKGM +GSVK Sbjct: 240 SQMTSISIEQIKAMENLSEKTLRTAQIFMGALPIMVVYPFLQKYFVKGMTVGSVK 294 >B3KH81.1 B3KH81_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 142/295 (48%), Positives = 209/295 (70%), Gaps = 3/295 (1%) Query: 7 METANLSRRIFQIFNIIVLTFMAFLCLLPILNLVAVSFSSRSVVEANQVGLWPKGLNLSS 66 M +LSR+ F FN L + LC LPI++++AVS SS+ A V LWP LSS Sbjct: 1 MHKPSLSRKFFLGFNYAFLIGLGLLCFLPIVHILAVSLSSKGAATAGIVKLWPVDFTLSS 60 Query: 67 YEYIFSNSQFFKSLWITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVWFFMVTM 126 Y+Y+ + QF ++W+TVQR V G + + LT+L+AYPLSK R F+ R+ Y WFF+ T Sbjct: 61 YQYVLNKPQFMVAMWVTVQRVVLGTGISMLLTLLIAYPLSKEPRDFKFRTQYAWFFVFTT 120 Query: 127 VFNGGLIPTYLVVNELHLVNSIWALILPEAIIMFNVLLLLNFFRAIPNELEEAALMDGAG 186 +F+GGLIP Y+ + + L+++IWAL++P A+ +FNV+LLLNFFR +P ELEE+ +DG Sbjct: 121 LFSGGLIPRYMTIRDTGLIDTIWALVIPGAVAVFNVILLLNFFRGLPKELEESCFIDGGS 180 Query: 187 WFVTLTRVYLPLSLPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTMVLNLDL 246 + +L ++Y PLSLP++AT+TLF +V WN WFDGL+ MN P++YPL +YLQT+++ +L Sbjct: 181 YITSLWKIYAPLSLPAMATVTLFTIVGQWNEWFDGLLLMNSPEKYPLSSYLQTVIVQTNL 240 Query: 247 SQLSSTALANNPSMLEITGRSLRSAMILACTLPILLAYPFLQRFFVKGMLLGSVK 301 + +++ A ++ E++ R+ ++A I +LPILL YPFLQRFFVKG++LGSVK Sbjct: 241 TSINADDAA---ALSEVSNRTFKAAQIFIGSLPILLLYPFLQRFFVKGIVLGSVK 292 >A4IP81.1 A4IP81_GEOTN Integral membrane protein Length = 296 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/292 (48%), Positives = 208/292 (71%), Gaps = 5/292 (1%) Query: 11 NLSRRIFQIFNIIVLTFMAFLCLLPILNLVAVSFSSRSVVEANQVGLWPKGLNLSSYEYI 70 +LS +IF IFN LT A LC+LP+++++AVSFS + AN VGLWP L +YE Sbjct: 8 SLSYKIFTIFNYTFLTVAALLCILPLIHILAVSFSGSAAATANLVGLWPVDFTLDAYEKT 67 Query: 71 FSNSQFFKSLWITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVWFFMVTMVFNG 130 N F +SLW + R V G + +++ + AYPLSK+++ FR R +Y+WFF+ TM+F+G Sbjct: 68 IGNENFLRSLWNSFLRVVLGTAISMAVMLCAAYPLSKSDKAFRGRKIYMWFFVFTMLFHG 127 Query: 131 GLIPTYLVVNELHLVNSIWALILPEAIIMFNVLLLLNFFR-AIPNELEEAALMDGAGWFV 189 GL+PTY+VV +L L ++IWALILP A+ FN++LL+NFFR ++P LEEAALMDGA F Sbjct: 128 GLVPTYMVVTKLGLTDTIWALILPSAVSAFNLILLINFFRTSVPKSLEEAALMDGANHFT 187 Query: 190 TLTRVYLPLSLPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTMVLNLDLSQL 249 ++YLP+S+P++ATI+LF +V HWNSWFDG+IYM+ YPL T+LQT+++ D +++ Sbjct: 188 IFWKIYLPISVPAIATISLFTMVFHWNSWFDGIIYMSDVKHYPLSTFLQTIIVQQDFTKM 247 Query: 250 SSTALANNPSMLEITGRSLRSAMILACTLPILLAYPFLQRFFVKGMLLGSVK 301 S A ++ ++ R++++A I LP+L YPF+Q+FFVKG++LG+ K Sbjct: 248 SVDA----ETLQNLSERTVKAAQIFIAALPMLAVYPFVQKFFVKGIVLGAEK 295 >B4BMD8.1 B4BMD8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/292 (48%), Positives = 208/292 (71%), Gaps = 5/292 (1%) Query: 11 NLSRRIFQIFNIIVLTFMAFLCLLPILNLVAVSFSSRSVVEANQVGLWPKGLNLSSYEYI 70 +LS +IF IFN LT A LC+LP+++++AVSFS + AN VGLWP L +YE Sbjct: 8 SLSYKIFTIFNYTFLTVAALLCILPLIHILAVSFSGSAAATANLVGLWPVDFTLDAYEKT 67 Query: 71 FSNSQFFKSLWITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVWFFMVTMVFNG 130 N F +SLW + R V G + +++ + AYPLSK+++ FR R +Y+WFF+ TM+F+G Sbjct: 68 IGNENFLRSLWNSFLRVVLGTAISMAVMLCAAYPLSKSDKAFRGRKIYMWFFVFTMLFHG 127 Query: 131 GLIPTYLVVNELHLVNSIWALILPEAIIMFNVLLLLNFFR-AIPNELEEAALMDGAGWFV 189 GL+PTY+VV +L L ++IWALILP A+ FN++LL+NFFR ++P LEEAALMDGA F Sbjct: 128 GLVPTYMVVTKLGLTDTIWALILPSAVSSFNLILLINFFRTSVPKSLEEAALMDGANHFT 187 Query: 190 TLTRVYLPLSLPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTMVLNLDLSQL 249 ++YLP+S+P++ATI+LF +V HWNSWFDG+IYM+ YPL T+LQT+++ D +++ Sbjct: 188 IFWKIYLPISVPAIATISLFTMVFHWNSWFDGIIYMSDVKHYPLSTFLQTIIVQQDFTKM 247 Query: 250 SSTALANNPSMLEITGRSLRSAMILACTLPILLAYPFLQRFFVKGMLLGSVK 301 S A ++ ++ R++++A I LP+L YPF+Q+FFVKG++LG+ K Sbjct: 248 SVDA----ETLQNLSERTVKAAQIFIAALPMLAVYPFVQKFFVKGIVLGAEK 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,596,394,033 Number of extensions: 60906182 Number of successful extensions: 290585 Number of sequences better than 1.0e-05: 5465 Number of HSP's gapped: 284316 Number of HSP's successfully gapped: 5467 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)