BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0014.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF53.1 B3KF53_9BACI Binding-protein-dependent transport system... 350 8e-95 B3KH82.1 B3KH82_9BACI Binding-protein-dependent transport system... 341 5e-92 C3J6V5.1 C3J6V5_9BACI Binding-protein-dependent transport system... 338 3e-91 B7YFA2.1 B7YFA2_9BACI Binding-protein-dependent transport system... 338 3e-91 A4IP82.1 A4IP82_GEOTN Putative uncharacterized protein 333 1e-89 >B3KF53.1 B3KF53_9BACI Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 350 bits (898), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 162/286 (56%), Positives = 220/286 (76%), Gaps = 1/286 (0%) Query: 1 MLLPAVIITIIFRYVPIGGLSVAFMDYQTVFGFF-DQEWVGWDNFTYIFNLPGFYNVLWN 59 M+LP + ++F Y+PIGG+ +AF + G F DQ+W+G NF Y+ NLP F N++WN Sbjct: 6 MILPGFLFLLVFNYLPIGGIIIAFQKFIPAKGLFGDQDWIGLRNFEYVMNLPNFDNIMWN 65 Query: 60 TFFIAVMKILGNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSP 119 TF+IA+MK++ L+VP+ A+LLNEVRH K+ VQT +YLPHFLSWV L G+ ++ILSP Sbjct: 66 TFYIAMMKVILGLLVPIVIAILLNEVRHMALKRGVQTAIYLPHFLSWVVLGGIFIEILSP 125 Query: 120 SSGILNNVLGFFGVKPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYEA 179 + G++N L FG++PIFFLG+ FP T+++TDVWKEFG+GTIIYLAA+T+I+P YEA Sbjct: 126 NDGLVNRALQSFGIEPIFFLGDNRWFPNTMILTDVWKEFGYGTIIYLAALTSINPNLYEA 185 Query: 180 AIIDGAGRWKQTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIIDT 239 A IDGA RW+QT+HVTLP + VI+LL VL +GN+L AGFDQ++N+YSP VY +GDI+DT Sbjct: 186 AQIDGASRWRQTLHVTLPGMQMVIVLLMVLNLGNLLNAGFDQIFNMYSPMVYESGDILDT 245 Query: 240 LVYRIGIVDVQFGPAAAVGFFKSVVSFILIVTGYRLAHRWTGYRIF 285 VYRIG++D QFG A AVG FKSV++ +L+ Y +A++ YRIF Sbjct: 246 FVYRIGLLDAQFGVATAVGLFKSVIALVLVSVSYYIAYKVADYRIF 291 >B3KH82.1 B3KH82_9BACI Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 341 bits (874), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 166/285 (58%), Positives = 224/285 (78%) Query: 1 MLLPAVIITIIFRYVPIGGLSVAFMDYQTVFGFFDQEWVGWDNFTYIFNLPGFYNVLWNT 60 M+LP ++I +I+ Y P+ G+++AF + G F +W+G DNF Y+F+LP ++WNT Sbjct: 15 MILPGIVIVLIYSYWPMIGIAMAFQKFVPFKGLFGSDWIGLDNFRYVFDLPETGQIIWNT 74 Query: 61 FFIAVMKILGNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSPS 120 FIA MKI+G L+VP+ +LLLNE+R++ K+ VQTL+YLPHFLSWV L G+ +DILSP+ Sbjct: 75 VFIAFMKIIGGLVVPILVSLLLNELRNELIKRGVQTLVYLPHFLSWVILGGIFIDILSPT 134 Query: 121 SGILNNVLGFFGVKPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYEAA 180 +GI N +LG+FG++PIFFLG+ FPYTLVITD+WKEFG+ TI+YLAA+T+I+P+ YEAA Sbjct: 135 NGIANQILGWFGIEPIFFLGSNQWFPYTLVITDIWKEFGFSTIVYLAALTSINPSLYEAA 194 Query: 181 IIDGAGRWKQTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIIDTL 240 +DGA RWKQT H+TLP + P+IILL L +GNVL AGFDQV+NLYSPQVY +GDI+DT Sbjct: 195 TVDGANRWKQTWHITLPGMMPIIILLATLSLGNVLNAGFDQVFNLYSPQVYESGDILDTF 254 Query: 241 VYRIGIVDVQFGPAAAVGFFKSVVSFILIVTGYRLAHRWTGYRIF 285 +YRIG+ Q+G A A+G FKS++SF+ IVT Y LA ++ YRIF Sbjct: 255 IYRIGMQGAQYGVATAIGLFKSLISFVFIVTSYALASKFANYRIF 299 >C3J6V5.1 C3J6V5_9BACI Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 162/285 (56%), Positives = 222/285 (77%) Query: 1 MLLPAVIITIIFRYVPIGGLSVAFMDYQTVFGFFDQEWVGWDNFTYIFNLPGFYNVLWNT 60 ML+PA+II +IF+YVP+ GL +AF DY+ GF WVG ++F +F V+WNT Sbjct: 31 MLIPALIIVLIFQYVPMLGLVMAFQDYEPWLGFLHSPWVGLEHFKTMFEYEDARQVIWNT 90 Query: 61 FFIAVMKILGNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSPS 120 I+ +KI+ NL VP+AFALLLNEV ++K++VQT++YLPHFLSWV L G+L+D+LSP Sbjct: 91 LVISTLKIIFNLGVPLAFALLLNEVYVMKFKRTVQTIVYLPHFLSWVILGGILIDMLSPE 150 Query: 121 SGILNNVLGFFGVKPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYEAA 180 GI+N L FGV+PIFFLG+ D F +V+TDVWKE G+ TI++LAA+T+I+P+ YEAA Sbjct: 151 GGIVNRFLSVFGVEPIFFLGDNDWFRTIVVVTDVWKECGFNTIVFLAALTSINPSLYEAA 210 Query: 181 IIDGAGRWKQTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIIDTL 240 I+DGA RW+QT+++TLP++ P+II++ L +GN+L AGFDQ+ NLY+P VY TGDIIDT Sbjct: 211 IVDGANRWQQTIYITLPSMLPIIIVVGTLSLGNILNAGFDQILNLYNPLVYKTGDIIDTY 270 Query: 241 VYRIGIVDVQFGPAAAVGFFKSVVSFILIVTGYRLAHRWTGYRIF 285 VYR+G+++ F A AVG FKSV+SFIL+VTGYRLA+++ Y+IF Sbjct: 271 VYRVGLLNGDFSYATAVGLFKSVISFILVVTGYRLAYKYANYKIF 315 >B7YFA2.1 B7YFA2_9BACI Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 162/285 (56%), Positives = 222/285 (77%) Query: 1 MLLPAVIITIIFRYVPIGGLSVAFMDYQTVFGFFDQEWVGWDNFTYIFNLPGFYNVLWNT 60 ML+PA+II +IF+YVP+ GL +AF DY+ GF WVG ++F +F V+WNT Sbjct: 31 MLIPALIIVLIFQYVPMLGLVMAFQDYEPWLGFLHSPWVGLEHFKTMFEYEDARQVIWNT 90 Query: 61 FFIAVMKILGNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSPS 120 I+ +KI+ NL VP+AFALLLNEV ++K++VQT++YLPHFLSWV L G+L+D+LSP Sbjct: 91 LVISTLKIIFNLGVPLAFALLLNEVYVMKFKRTVQTIVYLPHFLSWVILGGILIDMLSPE 150 Query: 121 SGILNNVLGFFGVKPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYEAA 180 GI+N L FGV+PIFFLG+ D F +V+TDVWKE G+ TI++LAA+T+I+P+ YEAA Sbjct: 151 GGIVNRFLSVFGVEPIFFLGDNDWFRTIVVVTDVWKECGFNTIVFLAALTSINPSLYEAA 210 Query: 181 IIDGAGRWKQTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIIDTL 240 I+DGA RW+QT+++TLP++ P+II++ L +GN+L AGFDQ+ NLY+P VY TGDIIDT Sbjct: 211 IVDGANRWQQTIYITLPSMLPIIIVVGTLSLGNILNAGFDQILNLYNPLVYKTGDIIDTY 270 Query: 241 VYRIGIVDVQFGPAAAVGFFKSVVSFILIVTGYRLAHRWTGYRIF 285 VYR+G+++ F A AVG FKSV+SFIL+VTGYRLA+++ Y+IF Sbjct: 271 VYRVGLLNGDFSYATAVGLFKSVISFILVVTGYRLAYKYANYKIF 315 >A4IP82.1 A4IP82_GEOTN Putative uncharacterized protein Length = 316 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 156/286 (54%), Positives = 222/286 (77%), Gaps = 1/286 (0%) Query: 1 MLLPAVIITIIFRYVPIGGLSVAFMDYQTVFGFFDQEWVGWDNFTYIFNLPGFYNVLWNT 60 MLLPA++I +F+Y+P+ GL +AF DY+ GF WVG ++F +F V+WNT Sbjct: 31 MLLPALVIVFVFQYIPMLGLVMAFQDYEPWLGFLHSPWVGLEHFKTMFEYEDARQVIWNT 90 Query: 61 FFIAVMKILGNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSPS 120 I+ +KI+ NL +P+AFALLLNE+ ++K++VQT++YLPHFLSWV L G+L+D+LSP Sbjct: 91 LVISTLKIIFNLAIPLAFALLLNEIYVMKFKRTVQTIVYLPHFLSWVILGGILIDMLSPE 150 Query: 121 SGILNNVL-GFFGVKPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYEA 179 G++N VL FG++PIFFLG+ D F +V+TDVWKE G+ TI++LAA+T+I+P+ YEA Sbjct: 151 GGMVNRVLTALFGIEPIFFLGDNDWFRTVVVVTDVWKECGFNTIVFLAALTSINPSLYEA 210 Query: 180 AIIDGAGRWKQTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIIDT 239 AI+DGA RW+QT+++TLP++ P+II++ L +GN+L AGFDQ+ NLY+P VY TGDIIDT Sbjct: 211 AIVDGANRWQQTIYITLPSMLPIIIVVGTLSLGNILNAGFDQILNLYNPLVYKTGDIIDT 270 Query: 240 LVYRIGIVDVQFGPAAAVGFFKSVVSFILIVTGYRLAHRWTGYRIF 285 VYR+G+++ F A AVG FKS++SFIL+VTGYRLA+++ Y+IF Sbjct: 271 YVYRVGLLNGDFSYATAVGLFKSIISFILVVTGYRLAYKYANYKIF 316 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.147 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,849,931,849 Number of extensions: 81889795 Number of successful extensions: 257976 Number of sequences better than 1.0e-05: 5399 Number of HSP's gapped: 252611 Number of HSP's successfully gapped: 5400 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)