BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0013.p (325 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF56.1 B3KF56_9BACI Response regulator receiver 144 8e-33 B1DAU8.1 B1DAU8_9BACL Two component transcriptional regulator, A... 142 4e-32 A9U777.1 A9U777_PHYPA Predicted protein 137 1e-30 B3KH84.1 B3KH84_9BACI Response regulator receiver 135 7e-30 B3KF21.1 B3KF21_9BACI Response regulator receiver 132 4e-29 >B3KF56.1 B3KF56_9BACI Response regulator receiver Length = 572 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 160/306 (52%), Gaps = 16/306 (5%) Query: 30 SVLVSLLEDTQSILNNQAGCPVSFAVASEEVTWLEVGRKYQTLRRIMVQFNLQRQESIVV 89 S L +LE QS G P+SF + S+ W V KY +L ++ + + + ++++ Sbjct: 262 SFLKGILEVIQSACQENIGLPISFTIGSQADGWESVSNKYHSLHHLL-NYRIGLENTVLL 320 Query: 90 -----------EGAFYQGKAAMEEEREYPELARMLPR--VGILEAHLQNGHQESFLKMMN 136 E QG EE+ E L R+L + ++E +L+ G + + + + Sbjct: 321 IDDAVSHDEPDEAGNVQG--LKEEDLEGERLGRVLKSNDLSLIEQYLEAGQRSKYFEALE 378 Query: 137 ELCQVLSGILSRHSLHAMELYLSVCRVLLTYINENQLSGKLSPGLDLSLLYNPGSMTDWA 196 L + + ++++ A E+Y +V L++YIN L+ K+ L + L W+ Sbjct: 379 LLLGPIRDVRTKNNAFAQEIYYTVSLYLMSYINRWALNEKIEAQLGQNRLMRIDFFDSWS 438 Query: 197 ERAHFLSKTAAALCDAAEIVRKDNTESTIARIKDYINQHLSSDLSLTALGKATGFNPSYL 256 E + +L++ ++ L D ++ +K + I ++++I HL DLSL L + NPSYL Sbjct: 439 EASLYLTELSSVLFDMQKVEQKKRADHIIDFLQEFIRNHLDEDLSLVRLAEQVYLNPSYL 498 Query: 257 SRMFKRDEGTGLHDYITDCRINLAKSLLMNTNMKIYEIAQKSGYDNSNYFIRTFKLLTGQ 316 SR++K++ G L ++I R+ AK LL + N+++ E+A++ GY+ ++ F R FK TG Sbjct: 499 SRIYKQETGNNLTEFIDSTRLMQAKRLLHSENLRVGEVARRVGYETASSFTRFFKKATGC 558 Query: 317 TPQEYR 322 +PQEY+ Sbjct: 559 SPQEYK 564 >B1DAU8.1 B1DAU8_9BACL Two component transcriptional regulator, AraC family Length = 547 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 102/317 (32%), Positives = 157/317 (49%), Gaps = 18/317 (5%) Query: 15 DIIWFI--VGQEQMVMPSVLVSLLEDTQSILNNQAGC------PVSFAVASEEVTWLEVG 66 D++W + E+ + LV LE T ++ Q C PV+F ++ W + Sbjct: 234 DLLWLLQPSEHEEEKFYNHLVRYLEGTLELI--QETCLQSLRLPVAFTISGGSCGWEAIN 291 Query: 67 RKYQTLRRIMVQFNLQRQESIVVEGAFYQGKAAMEEEREYPELARMLPRVGILEAHLQNG 126 R+Y LR++ + +I+V Q + E R+ E ++ P+ +L A L G Sbjct: 292 RQYDRLRQLQLMRIGGEGMTIIVTDRGEQLEEPHELHRK--EEGQVAPKAEMLAAFLDAG 349 Query: 127 HQESFLKMMNELCQVLSGILSRHSLH-AMELYLSVCRVLLTYINENQLSGKLSPGLDLSL 185 E F ++ EL L+ + + S++ +E+Y S+ +L +IN L G+ S L Sbjct: 350 KPEKFDEIFEELS--LAMLHANSSINRKIEIYYSIALILYAHINRAGLCGEFSDYCKLMR 407 Query: 186 LYNPGSMTDWAERAHFLSKTAAALCDAAEIVRKDNTESTIARIKDYINQHLSSDLSLTAL 245 L SM E +L + L K+N + I +I YIN+HL+ DLSL L Sbjct: 408 LDEHSSME---EAVRYLRQVTDQLFKVKSPENKENAATVIDKICHYINEHLNEDLSLVRL 464 Query: 246 GKATGFNPSYLSRMFKRDEGTGLHDYITDCRINLAKSLLMNTNMKIYEIAQKSGYDNSNY 305 + FNPSYLSR FK + G L +YI +CR+ AK LL +K+ E+A + GY+ ++ Sbjct: 465 AEINYFNPSYLSRFFKLECGVNLSEYIDNCRVRRAKELLKEDELKVREVAVEVGYEAAHS 524 Query: 306 FIRTFKLLTGQTPQEYR 322 F R FK TG TPQEYR Sbjct: 525 FTRFFKKATGMTPQEYR 541 >A9U777.1 A9U777_PHYPA Predicted protein Length = 561 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 148/287 (51%), Gaps = 2/287 (0%) Query: 36 LEDTQSILNNQAGCPVSFAVASEEVTWLEVGRKYQTLRRIMVQFNLQRQESIVVEGAFYQ 95 LE QS P+SFA A E V W E+ +YQ LR + + QE+I++EG Sbjct: 268 LEMIQSTSLELLKIPLSFAAAKEGVEWREIPARYQKLRAGLSRGLGIGQETILIEGQ-QS 326 Query: 96 GKAAMEEEREYPELARMLPRVGILEAHLQNGHQESFLKMMNELCQVLSGILSRHSLHAME 155 G +++E + R L R ++ ++ K+++ L ++ +E Sbjct: 327 GDFSVDESEIQKQTIRQLIRKWSGNDYVSEEEKQEMYKLLSLLSGMMDPFYEDVGFF-LE 385 Query: 156 LYLSVCRVLLTYINENQLSGKLSPGLDLSLLYNPGSMTDWAERAHFLSKTAAALCDAAEI 215 +Y ++ LLT +N + +++ + + + H+L A L +A + Sbjct: 386 IYYAIASHLLTQLNRWSVDHAALEEVEMDRVSHYQLHATRKDAFHYLIHAALRLIEARDD 445 Query: 216 VRKDNTESTIARIKDYINQHLSSDLSLTALGKATGFNPSYLSRMFKRDEGTGLHDYITDC 275 +K++T ++R+ Y+ +HL SDLSLT L NP Y+SR++K+ G L DYITD Sbjct: 446 EKKEHTNQVVSRLNRYVEEHLDSDLSLTTLSDLVHLNPYYMSRLYKQMTGVNLPDYITDE 505 Query: 276 RINLAKSLLMNTNMKIYEIAQKSGYDNSNYFIRTFKLLTGQTPQEYR 322 RI AK L++ +++K++EI +K G+++ YF R FK TG TPQE+R Sbjct: 506 RIKKAKELVVESHLKMHEICKKVGFESPAYFTRIFKKKTGSTPQEFR 552 >B3KH84.1 B3KH84_9BACI Response regulator receiver Length = 563 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 144/300 (48%), Gaps = 21/300 (7%) Query: 34 SLLEDTQSILNNQAGCPVSFAVASEEVTWLEVGRKYQTLRRIMVQFNLQRQESIVVEGAF 93 +LE Q + SFA+A E V W + K++ L++++ ES++ E Sbjct: 269 GMLEQIQDVCKTLLKLKTSFAMAGEWVDWERLPDKFEGLKQLLDSGLGIGHESLLTEAG- 327 Query: 94 YQGKAAMEEEREYPE-----LAR---MLPRVGILEAHLQNGHQESFLKMMNELCQVLSGI 145 ER P+ L R L R+ +L L NG +E F+++ +E+ S Sbjct: 328 ---------ERNRPDRMGHFLGRSRSHLKRMELLRGCLDNGDREEFMELFHEVTDTSSFP 378 Query: 146 LSRHSLHAMELYLSVCRVLLTYINENQ---LSGKLSPGLDLSLLYNPGSMTDWAERAHFL 202 L ME+Y + V++ + + + L+ + +D L + W E A + Sbjct: 379 PEVEYLLKMEVYYGLVSVMMPSLVDMEALCLNVEGEGAVDYITLTHLEEHDSWREAAEYF 438 Query: 203 SKTAAALCDAAEIVRKDNTESTIARIKDYINQHLSSDLSLTALGKATGFNPSYLSRMFKR 262 + A + E ++D IA+++ YI HLS DLSLT +G+A G NPSYLSR++K+ Sbjct: 439 ERLADIIFKRKEQGKQDQQHEVIAKVQRYIEDHLSGDLSLTQIGEAVGHNPSYLSRLYKQ 498 Query: 263 DEGTGLHDYITDCRINLAKSLLMNTNMKIYEIAQKSGYDNSNYFIRTFKLLTGQTPQEYR 322 G GL + I R+ AK LL T KI+ IA G+ + YF R FK T TPQEYR Sbjct: 499 VTGEGLSESINTARLAKAKQLLKETTDKIHVIAAAVGFSSPPYFYRFFKKTTHLTPQEYR 558 >B3KF21.1 B3KF21_9BACI Response regulator receiver Length = 540 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 154/317 (48%), Gaps = 24/317 (7%) Query: 15 DIIWFIVGQEQMVMPSVLVSLLEDTQSILNNQAGC------PVSFAVASEEVTWLEVGRK 68 D++W + + + LV LE T ++ Q C VSF ++ W +V + Sbjct: 234 DLLWLLQPRSKNPTGDRLVLYLEGTLELI--QEACLDSLELTVSFTISGFPCRWEDVTPQ 291 Query: 69 YQTLRRIMVQFNLQRQESIVVEGAFYQGKAAMEEEREYPELARMLPRVGILEAHLQNGHQ 128 Y+ LRR+ Q + ++++ K+ +E + ILEAHL+ G + Sbjct: 292 YERLRRLQ-QLKMGDGFPMILKDQTDSDKSPYCKEG-----VEASHKADILEAHLEAGRE 345 Query: 129 ESFLKMMNELCQVLSGILSRHSLHAMELYLSVCRVL---LTYINENQLSGKLSPGLDLSL 185 F++ + ++ +++ + H HA + Y S+ VL LT + +G+ LDL Sbjct: 346 NEFMEELEQMSEIVLTVDDLHQ-HAAQAYYSIALVLYAKLTRLGLQDPTGERGKLLDLE- 403 Query: 186 LYNPGSMTDWAERAHFLSKTAAALCDAAEIVRKDNTESTIARIKDYINQHLSSDLSLTAL 245 SM E +L +TA + + + T I R+ YI +HL D++L L Sbjct: 404 --GHDSMK---EAFRYLRRTAEDIFAFKRMDERGKTAHVIDRVCQYIEEHLDQDVTLVHL 458 Query: 246 GKATGFNPSYLSRMFKRDEGTGLHDYITDCRINLAKSLLMNTNMKIYEIAQKSGYDNSNY 305 + FNPSYLSR+FK++ G + +YI CRI AK LL ++K+ ++A GYD ++ Sbjct: 459 AERYYFNPSYLSRLFKQERGINISEYIEKCRIRRAKELLKEGDLKVRDVAPLVGYDAAHS 518 Query: 306 FIRTFKLLTGQTPQEYR 322 F R FK TG TPQEYR Sbjct: 519 FTRFFKKATGLTPQEYR 535 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,828,805,710 Number of extensions: 69581913 Number of successful extensions: 189879 Number of sequences better than 1.0e-05: 4509 Number of HSP's gapped: 190531 Number of HSP's successfully gapped: 4509 Length of query: 325 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 189 Effective length of database: 1,779,438,163 Effective search space: 336313812807 Effective search space used: 336313812807 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)