BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0012.p (209 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5N0.1 B3K5N0_9BACI Response regulator receiver 132 2e-29 B3KEZ8.1 B3KEZ8_9BACI Response regulator receiver 129 2e-28 B1DAU8.1 B1DAU8_9BACL Two component transcriptional regulator, A... 127 8e-28 B8I0N2.1 B8I0N2_CLOCE Two component transcriptional regulator, A... 123 1e-26 B3KF21.1 B3KF21_9BACI Response regulator receiver 121 5e-26 >B3K5N0.1 B3K5N0_9BACI Response regulator receiver Length = 447 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/190 (37%), Positives = 114/190 (60%), Gaps = 2/190 (1%) Query: 7 KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66 +LLIVDDEPVI GL LF+EQ Q LDV S+ EA+E+ R++ D ++ DI+MP + Sbjct: 3 RLLIVDDEPVIVNGLVQLFQEQTQFDLDVWKAYSAKEAVEIAMRVKLDILVSDIRMPHKN 62 Query: 67 GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAALDR 126 GL+L + + P +IIFLTGY +F+Y ++A++++ +Y+LKTEG D + AV A R Sbjct: 63 GLQLIDEITYYWPHCRIIFLTGYSEFEYVHEALRKNVDNYILKTEGIDPIFQAVQEASSR 122 Query: 127 LEYEQKLQMEYRQAQIQLSSMYPVFRQNLL-VALLGEQMPDLPEMAPSMAEIDEMFQPGR 185 L+ E + +++ +A++ P+ ++ L+ AL GE + L P E+ R Sbjct: 123 LDEENRRRIQAEKAKMHFQMAEPLLKRELIQKALKGEDLGSLLSQ-PRYEEVGFGIDADR 181 Query: 186 KVLLILGRFG 195 L++GR G Sbjct: 182 PAFLLVGRVG 191 >B3KEZ8.1 B3KEZ8_9BACI Response regulator receiver Length = 560 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/191 (39%), Positives = 109/191 (57%), Gaps = 2/191 (1%) Query: 7 KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66 +LLIVDD P+I GL LFE+ + L+L+V S EA+E+ R D V+ DI+M GI Sbjct: 3 RLLIVDDLPIIVDGLLELFEKTEHLELEVMKAYSGEEALEVLSHHRMDIVISDIKMSGIE 62 Query: 67 GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAALDR 126 G+EL +KS P K+I LTG++ F YA A+ AFDY+LK E D+K+I V A+D Sbjct: 63 GIELLQEIKSQWPACKVILLTGFNDFHYAKNALTFGAFDYLLKVESDEKIIHTVERAIDE 122 Query: 127 LEYEQKLQMEYRQAQIQLSSMYPVFRQNLLVALL-GEQMPDLPEMAPSMAEIDEMFQPGR 185 +E EQ +AQ + P ++ + LL G+ M + P++ + AE+D Sbjct: 123 IEEEQGQAQMILRAQSNMRKAMPSLQKEYIWGLLQGKTMTE-PQLGDAFAEMDITLDASL 181 Query: 186 KVLLILGRFGA 196 V L++GR A Sbjct: 182 PVYLLIGRIDA 192 >B1DAU8.1 B1DAU8_9BACL Two component transcriptional regulator, AraC family Length = 547 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 72/192 (37%), Positives = 106/192 (55%), Gaps = 3/192 (1%) Query: 7 KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66 +LLIVDDE +I L +F KLDV S+ EA+ R R D VL DI MPG++ Sbjct: 3 RLLIVDDEDIITDSLYEVFHRLMPEKLDVCKAYSAKEALHWMSRTRIDIVLTDISMPGMN 62 Query: 67 GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAALDR 126 GLEL+ +++F P K+IFLTG+ +FDYAYKAI+ Y+LKTEG DKV A V + Sbjct: 63 GLELSEEIQAFWPRCKVIFLTGFSEFDYAYKAIQMPKVRYLLKTEGYDKVTATVQEVMQE 122 Query: 127 LEYEQKLQMEYRQAQIQLSSMYPVFRQNLLVALLGEQMP---DLPEMAPSMAEIDEMFQP 183 +E+E ++ Q++ L ++ + + + + LL E D + E++ P Sbjct: 123 IEHENQMSKMLEQSRELLHTLEQMAQGDYIRHLLQESHGHGLDKDRLTDEFHEMNIGLNP 182 Query: 184 GRKVLLILGRFG 195 VLL++G Sbjct: 183 ASPVLLVMGHLS 194 >B8I0N2.1 B8I0N2_CLOCE Two component transcriptional regulator, AraC family Length = 566 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 109/193 (56%), Gaps = 7/193 (3%) Query: 7 KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66 +LLIVDDE +I GL +F + L LDV S EA+E R R D VL DI+MP + Sbjct: 3 RLLIVDDEEIIVNGLYEIFRSLKNLDLDVYRAYSGEEAVEWLSRTRMDIVLTDIRMPEMD 62 Query: 67 GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAALDR 126 GL+L + P+ K+IFLTGY++F+Y YKAI+ Y+LKTE +DKVI+ V A++ Sbjct: 63 GLQLLDVIYRRWPQCKVIFLTGYNEFEYVYKAIQHQGVSYILKTEDNDKVISVVENAIEE 122 Query: 127 LEYEQKLQMEYRQAQIQLSSMYPVFRQNLLVALLGEQMPDLPEMAPSMAEIDEM---FQP 183 ++ E K + A+ Q+ +F+++ + LL E+ + A+ +++ P Sbjct: 123 IKKEIKTEDLIHNAKEQIELALGLFQKDYFIHLLHEENSS----DVNKAQFEQLAIPMYP 178 Query: 184 GRKVLLILGRFGA 196 V+L+LG + Sbjct: 179 DHPVILLLGHIDS 191 >B3KF21.1 B3KF21_9BACI Response regulator receiver Length = 540 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/193 (38%), Positives = 107/193 (55%), Gaps = 9/193 (4%) Query: 7 KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66 +LL+VDDE +I L +F + KLDV S EA+ R R D VL DI+MPG+S Sbjct: 3 RLLVVDDEEIITNSLFEVFHQWMPEKLDVCRAYSGKEALNWMSRTRIDIVLTDIRMPGMS 62 Query: 67 GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAALDR 126 GLEL +++ P +IIFLTGY FDYAY+AI+ Y+LKTEG DKV+ V + Sbjct: 63 GLELTESIRALWPRCRIIFLTGYSNFDYAYQAIQMPNIRYLLKTEGFDKVMEVVKEVIHE 122 Query: 127 LEYEQKLQMEYRQAQIQLSSMYPV-----FRQNLL-VALLGEQMPDLPEMAPSMAEIDEM 180 +E +++ +Q+++Q+ ++ + FRQ + +LLG D M ++ Sbjct: 123 IESGNRMKEWLKQSRMQIEALEWMEQGEYFRQFVADSSLLG---ADNEAMIDDFQTLNIG 179 Query: 181 FQPGRKVLLILGR 193 P VLL LGR Sbjct: 180 LDPKLPVLLALGR 192 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,090,989,767 Number of extensions: 39401268 Number of successful extensions: 179091 Number of sequences better than 1.0e-05: 9171 Number of HSP's gapped: 186611 Number of HSP's successfully gapped: 9174 Length of query: 209 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 79 Effective length of database: 1,835,964,253 Effective search space: 145041175987 Effective search space used: 145041175987 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)