BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0571.0007.p
         (84 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DBM5.1 B1DBM5_9BACL Putative uncharacterized protein                 86   1e-15
B3KHH9.1 B3KHH9_9BACI Putative uncharacterized protein                 74   3e-12

>B1DBM5.1 B1DBM5_9BACL Putative uncharacterized protein
          Length = 70

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 54/70 (77%)

Query: 13 MISDEQLDAYRISGEKIRVVRDGLESNDVKGIVLAWDESQVMIRRPNKRIVKLDRNYIYQ 72
          MIS+EQLD +R SGEKIRVVRD +E NDV GIV+AWD++ V+IRR N+R+V+L RNY ++
Sbjct: 1  MISEEQLDQFRQSGEKIRVVRDEMEVNDVVGIVVAWDDATVVIRRHNRRVVRLSRNYRFE 60

Query: 73 PFAEPRQEPE 82
            +  R   E
Sbjct: 61 LASSERGSAE 70


>B3KHH9.1 B3KHH9_9BACI Putative uncharacterized protein
          Length = 72

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 13 MISDEQLDAYRISGEKIRVVRDGLESNDVKGIVLAWDESQVMIRRPNKRIVKLDRNYIYQ 72
          MISDE+LD  RISGE +RVVRDGLE+ND+ G V+AWD  QV+IRR N+R+VKLDR Y YQ
Sbjct: 1  MISDERLDELRISGELVRVVRDGLETNDIIGFVVAWDPEQVIIRRRNRRVVKLDRRYSYQ 60

Query: 73 PFAEPRQEP 81
             EPR  P
Sbjct: 61 LKKEPRVSP 69


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 489,462,643
Number of extensions: 16453686
Number of successful extensions: 41480
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 41480
Number of HSP's successfully gapped: 2
Length of query: 84
Length of database: 3,060,696,203
Length adjustment: 54
Effective length of query: 30
Effective length of database: 2,551,961,393
Effective search space: 76558841790
Effective search space used: 76558841790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)