BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0003.p (390 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHI3.1 B3KHI3_9BACI Putative uncharacterized protein 239 3e-61 B1DBM0.1 B1DBM0_9BACL SMC domain protein 150 2e-34 Q46GD5.1 Q46GD5_METBF Putative uncharacterized protein 122 5e-26 Q8TNC8.1 Q8TNC8_METAC Putative uncharacterized protein 120 3e-25 C1T9X7.1 C1T9X7_9FIRM Uncharacterized conserved protein 115 7e-24 >B3KHI3.1 B3KHI3_9BACI Putative uncharacterized protein Length = 409 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 132/268 (49%), Positives = 168/268 (62%) Query: 123 AADGEEFLRRSSAVLQRVELTKSIRQWELAMFGGWENQXXXXXXXXXXXHDAYTLEQERN 182 +AD E FLR +A +R EL ++IR E+ MF GW+ DA LE + Sbjct: 140 SADEETFLRMGTAAKRREELVRTIRHHEITMFSGWDETGRRRLMQLLELTDAAELEAQCV 199 Query: 183 AAEETAVSIEDERNAMLQHRGKLLQEREYLLERGMEDSVLQQLEEQRAALRVIAGQYAVT 242 EE A + R+ + + RG+LLQERE L G +DS LQQLEE R+ALR I QYAV Sbjct: 200 EKEEAASAAHSLRDELQERRGRLLQERESLESAGNQDSALQQLEEHRSALREIVSQYAVR 259 Query: 243 ALAAELMGRTRRIYEQEKQPQVLLLASEYFAKLTEGEYRRVVMTLGNKELKAEHRNXXXX 302 ++A+E + RTRR+YE+EKQPQVL LAS +F+ LT G Y RVVM LG++ L AE Sbjct: 260 SMASEFIKRTRRMYEEEKQPQVLQLASRFFSMLTGGVYSRVVMRLGDQSLLAERPTGELV 319 Query: 303 XXXXXXRGTAEQLYLAIRLALAETMSRQANLPLLFDDLFVNFDERRLYAALALLGELSAT 362 RGTAEQLYLA+RL L ++M A LPLL DDLFVNFD RL AL + ELS Sbjct: 320 ESSRLSRGTAEQLYLAMRLGLIQSMPHAAGLPLLLDDLFVNFDGDRLRHALGAILELSRN 379 Query: 363 RQIIMMTCHRHVVDAAAKIIPAASVISV 390 RQ+IMMTCHRHV + +++P A +I + Sbjct: 380 RQVIMMTCHRHVAEQTMELMPDARLIPM 407 >B1DBM0.1 B1DBM0_9BACL SMC domain protein Length = 1071 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 129/219 (58%) Query: 172 HDAYTLEQERNAAEETAVSIEDERNAMLQHRGKLLQEREYLLERGMEDSVLQQLEEQRAA 231 HD L+Q + A +E+ + +L RG+L Q+ E+LL+ +L E A Sbjct: 836 HDGDELKQLFEQLQLEAEQMEESKGELLDKRGRLRQQLEHLLQEEKHRELLAVKEMTLAR 895 Query: 232 LRVIAGQYAVTALAAELMGRTRRIYEQEKQPQVLLLASEYFAKLTEGEYRRVVMTLGNKE 291 + A +YAV +++A L+ T+RIYE+E+QP +L LASE+ +LTEG Y RV+ T Sbjct: 896 ITGDAERYAVLSVSASLIRTTKRIYEEERQPALLKLASEFVRRLTEGRYIRVMTTPDQPS 955 Query: 292 LKAEHRNXXXXXXXXXXRGTAEQLYLAIRLALAETMSRQANLPLLFDDLFVNFDERRLYA 351 ++ E + RGTAE +YLA+RLALA + A +PLL DDLFVNFD +RL+A Sbjct: 956 IRLETSDNRLVDSVMLSRGTAELVYLAMRLALAVERTAAAGMPLLLDDLFVNFDRQRLHA 1015 Query: 352 ALALLGELSATRQIIMMTCHRHVVDAAAKIIPAASVISV 390 LLGELS +RQ+++ TCH H+ A IP A I + Sbjct: 1016 VAQLLGELSLSRQLLLFTCHEHIRTALQNGIPHARQIEL 1054 >Q46GD5.1 Q46GD5_METBF Putative uncharacterized protein Length = 1284 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 133/279 (47%), Gaps = 16/279 (5%) Query: 121 GGAADGEEFLRRSSAVLQRVELTKSIRQWELAMFG-GWENQXXXXXXXXXXXHDAYTLEQ 179 G A EEF S QR EL ++ E ++ ++ D L++ Sbjct: 1010 GSAETEEEFYENSRLWAQRTELENRKKEAEQQIWRISGSDEEYRIFIKELQASDPSGLKE 1069 Query: 180 ERNAAEETAVSIE-------DERNAMLQHRGKLLQEREYLLERGMEDSVLQQLEEQRAAL 232 E EE S+E D R A+ G+L Q E L R M++S+L++L E+ Sbjct: 1070 ENRRLEECLKSLEQDISDTIDRRGAIRNQIGQLEQGSEGSLTRVMQESLLEELHEK---- 1125 Query: 233 RVIAGQYAVTALAAELMGRTRRIYEQEKQPQVLLLASEYFAKLTEGEYRRVVMTLGNKEL 292 + ++A LA E++ + ++YE+E+QP V++ A +F+K+T G Y R+ L + E+ Sbjct: 1126 ---SREWASLVLAREILAKAVKVYEKERQPAVIVEAQAFFSKITGGRYTRIYSPLNSTEI 1182 Query: 293 KAEHRNXXXXXXXXXXRGTAEQLYLAIRLALAETMSRQA-NLPLLFDDLFVNFDERRLYA 351 E R+ RGTAEQLYL++R R + +LP++FDD+ VNFD R + Sbjct: 1183 YVEDRDGRQKSIQELSRGTAEQLYLSLRFGFIREFGRHSESLPIVFDDVLVNFDPERCKS 1242 Query: 352 ALALLGELSATRQIIMMTCHRHVVDAAAKIIPAASVISV 390 + +L++ QI TCH V + P + + Sbjct: 1243 TCEAIKDLASDNQIFYFTCHPETVRMLVESFPETRAVDL 1281 >Q8TNC8.1 Q8TNC8_METAC Putative uncharacterized protein Length = 1300 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 132/280 (47%), Gaps = 18/280 (6%) Query: 121 GGAADGEEFLRRSSAVLQRVELTKSIRQWE--LAMFGGWENQXXXXXXXXXXXHDAYTLE 178 G AA +EF + QR EL +R+ E + G + + D LE Sbjct: 1026 GSAATEDEFRENARHWAQRTELENRVREAEQQIRRVSG-DGKKYELFVEELQASDPLGLE 1084 Query: 179 QERNAAEETAVSIEDERNAMLQHRGKLLQEREYL-------LERGMEDSVLQQLEEQRAA 231 +E EE ++E E + L RG + + E L L R M++S+L+ L E+ Sbjct: 1085 EENRKLEECLETLEQETSENLDRRGAIGNQIEQLEHGSEGSLARVMQESLLEDLHEK--- 1141 Query: 232 LRVIAGQYAVTALAAELMGRTRRIYEQEKQPQVLLLASEYFAKLTEGEYRRVVMTLGNKE 291 + ++A LA +++ + +YE+E+QP V++ A +F K+T G Y R+ L + E Sbjct: 1142 ----SRKWASLVLARKVLAKAIEVYEKERQPAVIVEAQTFFTKITAGRYTRIYSPLNSSE 1197 Query: 292 LKAEHRNXXXXXXXXXXRGTAEQLYLAIRLALAETMSRQA-NLPLLFDDLFVNFDERRLY 350 + E R RGTAEQLYL++R R + +LP++FDD+ VNFD R Sbjct: 1198 IYVEDREGRQKTVQELSRGTAEQLYLSLRFGFIREFGRHSESLPIVFDDVLVNFDPERCK 1257 Query: 351 AALALLGELSATRQIIMMTCHRHVVDAAAKIIPAASVISV 390 + + +L Q+ TCH V+ A P A V+ + Sbjct: 1258 STCEAIKDLVPGNQLFYFTCHPETVEMLAGRFPEARVVDL 1297 >C1T9X7.1 C1T9X7_9FIRM Uncharacterized conserved protein Length = 1065 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 1/162 (0%) Query: 230 AALRVIAGQYAVTALAAELMGRTRRIYEQEKQPQVLLLASEYFAKLTEGEYRRVVMTLGN 289 A L + +++V ++ +L+ + R YE+E+QP VL AS YF T G+Y R+++ LG Sbjct: 902 AELSELIEKWSVASICQKLLAQAREGYERERQPAVLKRASRYFKTFTGGKYNRILVPLGK 961 Query: 290 KELKAEHRNXXXXXXXXXXRGTAEQLYLAIRLALA-ETMSRQANLPLLFDDLFVNFDERR 348 + E + RGTAEQLYLA+R AL E R +LP+L DD+ VNFD R Sbjct: 962 SCPEVEKEDLTRLGTGELSRGTAEQLYLAMRFALVREFADRVVSLPVLMDDILVNFDPGR 1021 Query: 349 LYAALALLGELSATRQIIMMTCHRHVVDAAAKIIPAASVISV 390 + +A+ +GELS Q++ TCH HV A ++ IS+ Sbjct: 1022 MRSAVEAIGELSRQHQVLFFTCHPHVAQALVEVDFPVKYISL 1063 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,767,091,552 Number of extensions: 58287257 Number of successful extensions: 188457 Number of sequences better than 1.0e-05: 309 Number of HSP's gapped: 188099 Number of HSP's successfully gapped: 309 Length of query: 390 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 252 Effective length of database: 1,760,596,133 Effective search space: 443670225516 Effective search space used: 443670225516 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)