BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0024.p (497 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I227.1 B8I227_CLOCE Tail sheath protein 731 0.0 C1RPP4.1 C1RPP4_9CELL Phage tail sheath protein FI 348 6e-94 C0TJU1.1 C0TJU1_9PSEU Phage tail sheath protein FI 334 1e-89 Q9L0N8.1 Q9L0N8_STRCO Putative uncharacterized protein SCO4253 331 1e-88 C0TD42.1 C0TD42_9PSEU Phage tail sheath protein FI 324 1e-86 >B8I227.1 B8I227_CLOCE Tail sheath protein Length = 514 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/482 (69%), Positives = 415/482 (86%), Gaps = 4/482 (0%) Query: 1 VYVEEVSSGXXXXPIAGVGTSVGAFVGIAEKGVIGKAVLITNWSQFVNEFGQFIPNGYLA 60 VYVEEVSSG PI GVGT+VGAF+GIAEKGVIGKAVL+TNWSQ+V+EFG FIPN YLA Sbjct: 9 VYVEEVSSGVK--PIEGVGTAVGAFIGIAEKGVIGKAVLVTNWSQYVSEFGGFIPNAYLA 66 Query: 61 YAVYNFFAEGGTSCYVVRAASKDIQPASLTIKDTDNLDLFKVVARSEGKWGNRISVKISQ 120 YAVYNFFAEGGTSCYVVRAAS+D + + +KD+ +LF++ ARSEG WGNRIS +IS Sbjct: 67 YAVYNFFAEGGTSCYVVRAASEDAKKSLYIVKDSQGENLFEISARSEGNWGNRISFQISS 126 Query: 121 SSNKQQFGFKMVVQYLLDSSFNDEYTGEDEDGKIVEVFDNMLLINFEEKVNQVSAFVSVK 180 S+N Q GFK+ ++Y SSF+DEY GED +G++VE FDN+L++NFEEK+N +S+F+SV+ Sbjct: 127 STNGQMNGFKLNIKYTEKSSFSDEYVGEDVEGELVETFDNLLIVNFEEKINDLSSFISVR 186 Query: 181 PLVDLTILENMEKTPAFNETA--LSLSGGVNGMSPIDFLGDSASRAGIHAFDTIDGINIV 238 PLVDL ++NM+K P F E + L+ GV+G+S ++++ + GI+AF ID INI+ Sbjct: 187 PLVDLKKVDNMDKVPMFTEEDEFIELANGVDGISYVEYIDSEEKKLGINAFTPIDEINII 246 Query: 239 AAPDLADMAYSRGTILDMLNYCKLRKDCIFIVDPPHGLSPLEVKDFKEGAGNYSGNSFNT 298 AAPD+++M +R IL++LNYCK RKDC +++DPPHGL+P +VKDFKEGAG ++GNSFN+ Sbjct: 247 AAPDVSNMVSNRNIILEILNYCKTRKDCFYVIDPPHGLTPQQVKDFKEGAGEFTGNSFNS 306 Query: 299 SYGALYYPWVYINDPLTGKQKLVPPSGAIAGTYAYVDSVRGVHKAPAGTTDGYLDSVVGI 358 SYGALYYPWV+INDPLTGK+KL+PPSG++ GTYAYVDS RGVHKAPAGTTDGYLD+VVG+ Sbjct: 307 SYGALYYPWVFINDPLTGKKKLIPPSGSVVGTYAYVDSARGVHKAPAGTTDGYLDTVVGV 366 Query: 359 EKIITKAEQELLNPDGINVIRSLPEGICVWGARTLSSDSEWNYVNVRRLLMYIEESLDEG 418 EKI+TK EQELLNP G+NVIRSLPEGIC+WGARTLSSDSEW Y+N+RRL+MYIEES+D+ Sbjct: 367 EKIVTKGEQELLNPIGVNVIRSLPEGICIWGARTLSSDSEWRYINIRRLMMYIEESVDKA 426 Query: 419 SQWVVFEPNDPSLWGKVKRNLTAFLTRVWRDGALYGTTQEEAFFVKVDEENNPPSVRDVG 478 SQWVVFEPN+P+LWGKVKRN++AFLTRVWRDGALYG+TQEEAFFVKVDEENNPP+ RD G Sbjct: 427 SQWVVFEPNEPTLWGKVKRNISAFLTRVWRDGALYGSTQEEAFFVKVDEENNPPASRDAG 486 Query: 479 QL 480 QL Sbjct: 487 QL 488 >C1RPP4.1 C1RPP4_9CELL Phage tail sheath protein FI Length = 521 Score = 348 bits (894), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 200/507 (39%), Positives = 277/507 (54%), Gaps = 52/507 (10%) Query: 1 VYVEEVSSGXXXXPIAGVGTSVGAFVGIAEKGVIGKAVLITNWSQFVNEFGQFIPNGYLA 60 VYVEEV +G PI GVGTSV AFVG+A +G + L++NW+QF FG F+P YLA Sbjct: 9 VYVEEVEAGSR--PIEGVGTSVAAFVGMAARGPFNQPTLVSNWTQFTEAFGDFVPGSYLA 66 Query: 61 YAVYNFFAEGGTSCYVVRAASKDIQ----------PASLTIKDTDNLDLFKVVARSEGKW 110 +AVY +F GG++ YVVR + P +L + ++V A Sbjct: 67 HAVYGYFLNGGSTAYVVRIGQEQTADADEVRGRAAPKALPAGAQAVVGAYRVQAAERAPK 126 Query: 111 GNRISVKISQS--SNKQQFGFKMVVQYLLDSSFNDEYTGEDEDGKIVEVFDNMLLI---- 164 ++SV+I+ + N FK+VV+ DGK E FDN+ Sbjct: 127 TKQLSVEIADAGGENPPDDQFKLVVRV---------------DGKEAETFDNVTTKRGDD 171 Query: 165 NFEEKVNQVSAFVSVKPLVDLTILENMEKTPAFNETALSLSG--GVNGMSPIDFLGDSAS 222 N KVNQ S V ++ L + L +K A + + D++GD+A Sbjct: 172 NVATKVNQHSKLVVIEELASGSALTRPDKGTAELQVPEPEPEPPATGDLGADDYIGDAAD 231 Query: 223 RAGIHAFDTIDGINIVAAPDLA--------DMAYSRGTILDMLNYCKLRKDCIFIVDPPH 274 R G + +D + IVA PDL D+ + L M+ +C+L + + I+DPP Sbjct: 232 RTGFSGLEAVDEVTIVAVPDLVAALEQGAIDLETFQAVQLAMIAHCELMGNRMAILDPPP 291 Query: 275 GLSPLEVKDFKEGAGNYSGNSFNTSYGALYYPWVYINDPLTGKQKLVPPSGAIAGTYAYV 334 GL+P +VKD++ Y ++ Y LY+P++ + DP TG + VPPSG +AG +A Sbjct: 292 GLNPQQVKDWRVDTAGY-----DSKYATLYWPYLKVFDPATGGNRFVPPSGHVAGIWARN 346 Query: 335 DSVRGVHKAPAGTTDGYLDSVVGIEKIITKAEQELLNPDGINVIRSLP-EGICVWGARTL 393 D RGVHKAPA + V+ + IT+AE LLNP GIN IR+ P G+ VWGARTL Sbjct: 347 DESRGVHKAPANEV---VRGVITLATQITRAEHNLLNPVGINAIRTFPGRGVRVWGARTL 403 Query: 394 SSDSEWNYVNVRRLLMYIEESLDEGSQWVVFEPNDPSLWGKVKRNLTAFLTRVWRDGALY 453 SSD W YVNVRRL Y+EES+ G+QWVVFEPND +LW +++R ++AFL WR GAL+ Sbjct: 404 SSDPAWRYVNVRRLFNYLEESILIGTQWVVFEPNDDALWARIRRTISAFLVNEWRKGALF 463 Query: 454 GTTQEEAFFVKVDEENNPPSVRDVGQL 480 G + EEAFFV+ D E NP D GQ+ Sbjct: 464 GLSPEEAFFVQCDRETNPAEAIDAGQV 490 >C0TJU1.1 C0TJU1_9PSEU Phage tail sheath protein FI Length = 509 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 197/499 (39%), Positives = 285/499 (57%), Gaps = 48/499 (9%) Query: 1 VYVEEVSSGXXXXPIAGVGTSVGAFVGIAEKGVIGKAVLITNWSQFVNEFGQFIPNGYLA 60 VYVEEV SG PI GVGT+V AFVG AE+G + L+ NW+QFV FG F + YL Sbjct: 9 VYVEEVQSGAR--PIEGVGTAVAAFVGFAERGPFHRPTLVANWNQFVQLFGGFTEDAYLP 66 Query: 61 YAVYNFFAEGGTSCYVVRAASKDIQPASLTIKDTDNLDLFKVVARSEGKWGNRISVKI-- 118 +AVY +F+ GG S YVVR + + S+ + + L + R+ G +SV++ Sbjct: 67 HAVYGYFSNGGGSAYVVRVGGERQE--SVEPPKAEPVRLGSLTVRALPDAGGDVSVEVVD 124 Query: 119 SQSSNKQQFGFKMVVQYLLDSSFNDEYTGEDEDGKIVEVFDNMLLINFEE----KVNQVS 174 + N FK++V+ + ++VE D + N + ++ + S Sbjct: 125 ADGENPPDDRFKLLVR---------------QGNRVVETHDVSIRKNAKNYVATQLAERS 169 Query: 175 AFVSVKPLVDLTILENMEKTPAF-NETALSLSGGVNG-MSPIDFLGDSASRAGIHAFDTI 232 V V + + ++T A TA + S GV + P ++LGDS +R G ++I Sbjct: 170 KLVEVVEQPSGALTKPDKQTVALPGATAPASSAGVPARIDPQEYLGDSEARTGFGGLESI 229 Query: 233 DGINIVAAPDLADMAYSRGTI---------LDMLNYCKLRKDCIFIVDPPHGLSPLEVKD 283 D + +VA PDL +Y RG I L ++++C+ D + ++D P GL+P V+ Sbjct: 230 DAVTMVAVPDLMS-SYQRGQIDLEGVKTVQLAVISHCEQMGDRVAVLDAPPGLTPQRVRA 288 Query: 284 FK-EGAGNYSGNSFNTSYGALYYPWVYINDPLTGKQKLVPPSGAIAGTYAYVDSVRGVHK 342 ++ E AG +++++ LYYPW+ + DP +G+ VPPSG +AG + D+ RGVHK Sbjct: 289 WRLEEAG------YDSNFATLYYPWIKVFDPSSGRNTFVPPSGHVAGVWGRSDAERGVHK 342 Query: 343 APAGTTDGYLDSVVGIEKIITKAEQELLNPDGINVIRSLP-EGICVWGARTLSSDSEWNY 401 APA L V +E I+K+EQ+LLNP G+N IR+ GI +WGART+SSD W Y Sbjct: 343 APANEV---LRGAVDLETGISKSEQDLLNPIGVNCIRAFAGRGIRIWGARTVSSDPAWRY 399 Query: 402 VNVRRLLMYIEESLDEGSQWVVFEPNDPSLWGKVKRNLTAFLTRVWRDGALYGTTQEEAF 461 +NVRRL Y+EES+ G+QWVVFEPND LW ++RN+TAFLT WR GAL+G T EAF Sbjct: 400 LNVRRLFNYLEESILIGTQWVVFEPNDDRLWSSIRRNITAFLTEQWRQGALFGRTPAEAF 459 Query: 462 FVKVDEENNPPSVRDVGQL 480 +VK D ENNP D+GQ+ Sbjct: 460 YVKCDAENNPAESIDLGQV 478 >Q9L0N8.1 Q9L0N8_STRCO Putative uncharacterized protein SCO4253 Length = 534 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 204/523 (39%), Positives = 289/523 (55%), Gaps = 71/523 (13%) Query: 1 VYVEEVSSGXXXXPIAGVGTSVGAFVGIAEKGVIGKAVLITNWSQFVNEFGQFIPNGYLA 60 VYVEEV+SG PI GVGTSV AFVG+A G + + L+TNW+Q+V FG F YLA Sbjct: 9 VYVEEVASGSR--PIEGVGTSVAAFVGLAPTGPLNEPTLVTNWTQYVAAFGDFTGGYYLA 66 Query: 61 YAVYNFFAEGGTSCYVVRA------ASKD------IQPASLT--------IKDTDNLDLF 100 ++VY FF GG++ YVVR A+ D PA++T + L F Sbjct: 67 HSVYGFFNNGGSAAYVVRVGGSAEDAAADGSVNGAAAPAAVTGSTAKALPAAEPKQLGTF 126 Query: 101 KVVARSEGKWGNRISVKISQSSNKQQF-GFKMVVQYLLDSSFNDEYTGEDEDGKIVEVFD 159 V A + G+ G ++V+++ + FK++V+ D D K VE FD Sbjct: 127 AVTATAAGQSGP-LTVEVADPEGEGPAERFKLIVK--------------DGD-KPVETFD 170 Query: 160 --------NMLLINFEEKVNQVSAFVSVKPLVDLTILENMEKTPAFNETALSLSGGVNGM 211 + ++ +E+ ++ P L EN T +A Sbjct: 171 VSAKKGNRSYVVTQVKERSKLIT-VTEAAPSAQLVRPENQSLTLPAPPSAAPAVPAGQAE 229 Query: 212 S----PIDFLGDSASRAGIHAFDTIDGINIVAAPDLADMAYSRGTI---------LDMLN 258 S P +LGDS+ R G + ID I++VA PDL AY RG I L ++ Sbjct: 230 SAHPGPAQYLGDSSDRTGFGGLEAIDEISMVAVPDLM-AAYQRGAIDLEAVKAVQLGLIA 288 Query: 259 YCKLRKDCIFIVDPPHGLSPLEVKDFKEGAGNYSGNSFNTSYGALYYPWVYINDPLTGKQ 318 +C+L D + I+DPP + +++ +++ Y ++ Y ALYYPW+ DP TG+ Sbjct: 289 HCELMGDRVAIIDPPPNQNARQIRVWRQETAGY-----DSKYAALYYPWIKSFDPATGQS 343 Query: 319 KLVPPSGAIAGTYAYVDSVRGVHKAPAGTTDGYLDSVVGIEKIITKAEQELLNPDGINVI 378 +LVPPSG +AG +A DS RGVHKAPA + V +E IT+ EQ+LLNP G+N I Sbjct: 344 RLVPPSGHVAGIWARNDSERGVHKAPANEV---VRGAVDLELQITRGEQDLLNPIGVNCI 400 Query: 379 RSLP-EGICVWGARTLSSDSEWNYVNVRRLLMYIEESLDEGSQWVVFEPNDPSLWGKVKR 437 RS P GI VWGARTLSSD W Y+N+RR Y+EES+ G+QWVVFEPND +LW +++R Sbjct: 401 RSFPGRGIRVWGARTLSSDPAWRYLNIRRYFNYLEESILIGTQWVVFEPNDHNLWARIRR 460 Query: 438 NLTAFLTRVWRDGALYGTTQEEAFFVKVDEENNPPSVRDVGQL 480 N++AFL WR+GAL+G + ++A++VK DEE NPP D+G++ Sbjct: 461 NVSAFLVNEWRNGALFGQSPDQAYYVKCDEETNPPESVDLGRV 503 >C0TD42.1 C0TD42_9PSEU Phage tail sheath protein FI Length = 506 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 191/507 (37%), Positives = 270/507 (53%), Gaps = 59/507 (11%) Query: 1 VYVEEVSSGXXXXPIAGVGTSVGAFVGIAEKGVIGKAVLITNWSQFVNEFGQFIPNGYLA 60 +YVEEV +G PI GVGT+V AFVG A +G L++NW+Q+ FG F+ YL Sbjct: 1 MYVEEVEAGAR--PIEGVGTAVAAFVGFAGRGPFNTPTLVSNWAQYAQTFGDFVEGTYLG 58 Query: 61 YAVYNFFAEGGTSCYVVRAASKD---------IQPASLTIKDTDNLDLFKVVARSEGKWG 111 AVY +F GG +CYVVR + +L T L +KV A++ G Sbjct: 59 QAVYGYFLNGGGNCYVVRIGGERDDAGTGGGPSGNGALPSGATGVLGGYKVTAKAIGAGD 118 Query: 112 NRISVKISQSSNKQQFGFKMVVQYLLDSSFNDEYTGEDEDGKIVEVFDNMLLINFEEKVN 171 + V + N + F ++V+ + GK+VE + K Sbjct: 119 ITVEVADAAGENPAEDRFTLLVK---------------DAGKVVETH------HVTTKRT 157 Query: 172 QVSAFVSVKPLVDLTILENMEKTPA-FNETALSLSGGVNGMSPI-------DFLGDSASR 223 + + V+ +L +E + PA + A++L + + + D++GD A R Sbjct: 158 KENVVTVVREKSNLITVEELANPPAKADRGAVALRADESAPTAVPGKVAADDYVGDVADR 217 Query: 224 AGIHAFDTIDGINIVAAPDLADMAYSRGTI---------LDMLNYCKLRKDCIFIVDPPH 274 G + ID I +VA PDL AY R I L M+ +C+ D + ++DPP Sbjct: 218 TGFGGLEAIDEITMVAVPDLMS-AYQRDQISLEGVKAVQLAMIAHCEQMGDRMAVLDPPP 276 Query: 275 GLSPLEVKDFKEGAGNYSGNSFNTSYGALYYPWVYINDPLTGKQKLVPPSGAIAGTYAYV 334 L+P +V+D+++ Y ++ Y ALYYPWV + D VPPSG +AG +A Sbjct: 277 ALNPQQVRDWRQNVAGY-----DSKYAALYYPWVKVFDAAGDDHLFVPPSGHMAGVWART 331 Query: 335 DSVRGVHKAPAGTTDGYLDSVVGIEKIITKAEQELLNPDGINVIRSLP-EGICVWGARTL 393 D+ RGVHKAPA + V ++ +TK EQELLNP G+N +RS P GI VWGARTL Sbjct: 332 DAGRGVHKAPANEV---VRGAVALQTQLTKNEQELLNPIGVNCVRSFPGRGIRVWGARTL 388 Query: 394 SSDSEWNYVNVRRLLMYIEESLDEGSQWVVFEPNDPSLWGKVKRNLTAFLTRVWRDGALY 453 SSD W Y+NVRRL Y+EES+ G+QWVVFEPND +LW +++R ++AFL WR GAL+ Sbjct: 389 SSDPAWRYLNVRRLFNYLEESILSGTQWVVFEPNDDALWARIRRTISAFLVNEWRKGALF 448 Query: 454 GTTQEEAFFVKVDEENNPPSVRDVGQL 480 G T +EAF+VK D E NP D GQ+ Sbjct: 449 GLTPDEAFYVKCDRETNPAEAIDAGQV 475 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,083,758,991 Number of extensions: 137152770 Number of successful extensions: 295930 Number of sequences better than 1.0e-05: 235 Number of HSP's gapped: 295463 Number of HSP's successfully gapped: 270 Length of query: 497 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 357 Effective length of database: 1,741,754,103 Effective search space: 621806214771 Effective search space used: 621806214771 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)