BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0020.p (158 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I231.1 B8I231_CLOCE Putative uncharacterized protein 238 1e-61 Q74EI3.1 Q74EI3_GEOSL Putative uncharacterized protein 119 1e-25 Q3JA07.1 Q3JA07_NITOC Conserved hypothetical phage tail region p... 107 4e-22 B6BXU5.1 B6BXU5_9GAMM Conserved hypothetical phage tail region p... 107 4e-22 A7NMW7.1 A7NMW7_ROSCS Conserved hypothetical phage tail protein 102 8e-21 >B8I231.1 B8I231_CLOCE Putative uncharacterized protein Length = 157 Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 106/156 (67%), Positives = 129/156 (82%) Query: 3 ANILNIGAKSNWVPGYREDPYLAFNFIVEIDGISVAGFSEVSGLSIETQVERKTFGGENH 62 ANI+N+ + NWVPGYR+DPYL FNFIVEIDGI+VAGF++VSGLSIETQVERKTFGGENH Sbjct: 2 ANIVNLVERRNWVPGYRKDPYLTFNFIVEIDGIAVAGFTDVSGLSIETQVERKTFGGENH 61 Query: 63 KEFVFLGQTKYSDLTLKNGVTNDEYLWNWYQNVVNGVVKRRSGSICLLDHSGTPKVWWNF 122 KE+ FL QTKYSD+TLK+G+TND+YLWNWY+ V+NG + R++GSICLLDHSG PK+WW+F Sbjct: 62 KEYTFLTQTKYSDITLKHGITNDDYLWNWYRRVINGRITRKNGSICLLDHSGNPKLWWDF 121 Query: 123 IEACPIKWEGPAFXXXXXXXXXXXXXXTHNGLYRYR 158 + ACPIKWEGPAF THNG+ ++ Sbjct: 122 LGACPIKWEGPAFSATSSSVAAETLVLTHNGINMHK 157 >Q74EI3.1 Q74EI3_GEOSL Putative uncharacterized protein Length = 146 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 57/136 (41%), Positives = 77/136 (56%) Query: 19 REDPYLAFNFIVEIDGISVAGFSEVSGLSIETQVERKTFGGENHKEFVFLGQTKYSDLTL 78 R+DPY AF F+VE++G+ V GF+EVSGL ET+VE GG N T+Y +L L Sbjct: 8 RKDPYGAFRFLVELEGLVVGGFAEVSGLQAETEVEEYREGGVNEHPHKLRKITRYPNLVL 67 Query: 79 KNGVTNDEYLWNWYQNVVNGVVKRRSGSICLLDHSGTPKVWWNFIEACPIKWEGPAFXXX 138 + G+T+ LW WY++V+ G V RR+G++ L+D G P F A P+KWEGP Sbjct: 68 RRGITDCRVLWEWYRDVIAGTVSRRNGAVILMDREGNPAWRMEFSGAYPVKWEGPELKAD 127 Query: 139 XXXXXXXXXXXTHNGL 154 HNGL Sbjct: 128 GNATAIEKVELVHNGL 143 >Q3JA07.1 Q3JA07_NITOC Conserved hypothetical phage tail region protein Length = 146 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 17 GYREDPYLAFNFIVEIDGISVAGFSEVSGLSIETQVERKTFGGENHKEFVFLGQTKYSDL 76 G R DPY FNF+VEIDGI+ A F E SG + GG N TKYS++ Sbjct: 4 GQRIDPYGNFNFLVEIDGITRAAFQEASGFDSSIDITEHREGGNNTTMGKLPAMTKYSNI 63 Query: 77 TLKNGVTNDEYLWNWYQNVVNG--VVKRRSGSICLLDHSGTPKVWWNFIEACPIKWEGPA 134 TLK G+ +D L++W++ V G R++GS+ LLD G KV WNF A P KW GP Sbjct: 64 TLKWGLADDTELYDWHRQWVTGDPAAARKNGSVVLLDRQGQEKVRWNFFSAWPAKWTGPT 123 Query: 135 FXXXXXXXXXXXXXXTHNGLYR 156 F H GL R Sbjct: 124 FNAEGNDVAIETLELAHEGLER 145 >B6BXU5.1 B6BXU5_9GAMM Conserved hypothetical phage tail region protein Length = 146 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 17 GYREDPYLAFNFIVEIDGISVAGFSEVSGLSIETQVERKTFGGENHKEFVFLGQTKYSDL 76 G R DPY FNF+VEIDGI+ A F E SG + GG N TKYS++ Sbjct: 4 GQRIDPYGNFNFLVEIDGITRAAFQEASGFDSSIDITEHREGGNNTTMGKLPAMTKYSNI 63 Query: 77 TLKNGVTNDEYLWNWYQNVVNG--VVKRRSGSICLLDHSGTPKVWWNFIEACPIKWEGPA 134 TLK G+ +D L++W++ V G R++GS+ LLD G KV WNF A P KW GP Sbjct: 64 TLKWGLADDTELYDWHRQWVTGDPAAARKNGSVVLLDRQGQEKVRWNFFSAWPAKWTGPT 123 Query: 135 FXXXXXXXXXXXXXXTHNGLYR 156 F H GL R Sbjct: 124 FNAEGNDVAIETLELAHEGLER 145 >A7NMW7.1 A7NMW7_ROSCS Conserved hypothetical phage tail protein Length = 142 Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 73/135 (54%) Query: 20 EDPYLAFNFIVEIDGISVAGFSEVSGLSIETQVERKTFGGENHKEFVFLGQTKYSDLTLK 79 E+ Y ++ F VEI G+ A F+EVSGL +ET++ GG N G+TK ++TLK Sbjct: 5 EEAYPSYRFYVEIAGVPHAVFTEVSGLQVETEITEYEEGGNNDFVHRLPGRTKIGNITLK 64 Query: 80 NGVTNDEYLWNWYQNVVNGVVKRRSGSICLLDHSGTPKVWWNFIEACPIKWEGPAFXXXX 139 G+T+ L W+ + G + RR+ ++ + D +G WNFIEA PIKW GP F Sbjct: 65 RGMTSSNELLQWFLKIARGSIDRRNVTVIMYDSAGKELFRWNFIEAYPIKWTGPQFTAAS 124 Query: 140 XXXXXXXXXXTHNGL 154 THNG+ Sbjct: 125 TEAAVETLELTHNGM 139 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 947,091,768 Number of extensions: 37276250 Number of successful extensions: 65050 Number of sequences better than 1.0e-05: 119 Number of HSP's gapped: 64998 Number of HSP's successfully gapped: 119 Length of query: 158 Length of database: 3,060,696,203 Length adjustment: 119 Effective length of query: 39 Effective length of database: 1,939,595,418 Effective search space: 75644221302 Effective search space used: 75644221302 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)