BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0018.p (203 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I233.1 B8I233_CLOCE LysM domain-containing protein 319 9e-86 Q2W631.1 Q2W631_MAGMM Uncharacterized protein containing LysM do... 163 8e-39 C0ZHR6.1 C0ZHR6_BREBN Putative uncharacterized protein 115 2e-24 A5UTV1.1 A5UTV1_ROSS1 Putative uncharacterized protein 98 3e-19 A7NMW5.1 A7NMW5_ROSCS Peptidoglycan-binding LysM 98 4e-19 >B8I233.1 B8I233_CLOCE LysM domain-containing protein Length = 204 Score = 319 bits (817), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 152/205 (74%), Positives = 178/205 (86%), Gaps = 3/205 (1%) Query: 1 MAEKAKIIPLDMPVGA--IEVMFNPNEYTVSFEGKYTGEKNNKQFQITETPELKVSLFYD 58 MAEKA+IIPLD+P GA I VMFNPNEYTVSFEGKYTGE + KQFQI ETPE K+SLFYD Sbjct: 1 MAEKAQIIPLDLP-GAEPISVMFNPNEYTVSFEGKYTGEDDKKQFQIAETPEFKISLFYD 59 Query: 59 TYEKRTDVRKKTKLLTSLLDPKVSGKNTKKPPVCLFVWGGFTYRGLLSKIEQKFTMFMEN 118 TYEKR DVR++T +T+LL+PKV+GK TKKPP CLFVWGG++YRG++SKIEQK+TMF+EN Sbjct: 60 TYEKRRDVRRETMKITNLLNPKVAGKKTKKPPSCLFVWGGYSYRGVISKIEQKYTMFLEN 119 Query: 119 GTPVRSLLDVTFITEESDKTVEDNRGLNACRKLWVVKSGDRLDLIANEALKEPLAWRRIA 178 GTPVRSLLD+T I+++ K VE +RG ACRKLW+VKSGDRLD+IANEALK+PL WR IA Sbjct: 120 GTPVRSLLDITLISDKPQKKVELDRGKEACRKLWIVKSGDRLDIIANEALKDPLKWRTIA 179 Query: 179 ELNKIVNPIGFPGKNDIGRTLVIPD 203 N I+NP+GFP KND GRTLVIPD Sbjct: 180 AANGIINPLGFPSKNDFGRTLVIPD 204 >Q2W631.1 Q2W631_MAGMM Uncharacterized protein containing LysM domain Length = 229 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 126/206 (61%), Gaps = 7/206 (3%) Query: 1 MAEKAKIIPLDMPVGAIEVMFNPNEYTVSFEGKYTGEKNNKQFQITETPELKVSLFYDTY 60 M EKAKI+ ++ I VM+NP E +++ GE +N QFQ + +L V+LF+D++ Sbjct: 1 MLEKAKIV-VESSREEIPVMYNPTELSLNRTVVVQGEGSNIQFQRSNADDLVVTLFFDSF 59 Query: 61 EKRTDVRKKTKLLTSLLDPKVSGKNTKKPPVCLFVWGGFTYRGLLSKIEQKFTMFMENGT 120 ++ TDVRK T + +L P K+PPV +F W G + G+++++EQKFTMF+ +G Sbjct: 60 DQATDVRKSTDRIAALTLPTYGTGVRKEPPVVIFTWAGPLFTGIITRLEQKFTMFLPSGI 119 Query: 121 PVRSLLDVTF---ITEESDKTVEDNRGLNACRKLWVVKSGDRLDLIANEALKEPLAWRRI 177 PVR+ L VTF +TE+ D + RG CR+LW V DRL LIA L + WR I Sbjct: 120 PVRAELTVTFKNVLTEQQDL---EARGYFNCRQLWTVAENDRLYLIAQTTLGDSSLWRLI 176 Query: 178 AELNKIVNPIGFPGKNDIGRTLVIPD 203 A N I +P+ FP + DIGRTLVI D Sbjct: 177 AAENDIYDPLNFPRRTDIGRTLVIVD 202 >C0ZHR6.1 C0ZHR6_BREBN Putative uncharacterized protein Length = 211 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 9/177 (5%) Query: 16 AIEVMFNPNEYTVSFEGKYTGEKNNKQ------FQITETPELKVSLFYDTYEKRTDVRKK 69 +I V+FNP+EY V Y+ +K Q F + L V LF+DTYE DVR Sbjct: 23 SISVLFNPSEYKVDASNNYSWQKILGQSVPVGMFTSGDIETLSVDLFFDTYEAGVDVRAF 82 Query: 70 TKLLTSLLDPKVSGKNTKKPPVCLFVWGGFTYRGLLSKIEQKFTMFMENGTPVRSLLDVT 129 T + L+ + K PP+C FVW F + G++ K+ Q+FTMF++ GTPVR+ L VT Sbjct: 83 TNQVLGLMAVE---KKISTPPLCKFVWDSFQFTGVVEKVSQRFTMFLDQGTPVRATLGVT 139 Query: 130 FITEESDKTVEDNRGLNACRKLWVVKSGDRLDLIANEALKEPLAWRRIAELNKIVNP 186 F K+ +D +V GD+L L+A + + WR IA N+I NP Sbjct: 140 FKGTSVKKSADDIGTAREKVAQQMVNQGDQLHLMAYRSYNDSSKWRNIANANQIDNP 196 >A5UTV1.1 A5UTV1_ROSS1 Putative uncharacterized protein Length = 225 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 108/201 (53%), Gaps = 21/201 (10%) Query: 4 KAKIIPLDMPVGAIEVMFNPNEYTVSFEGKYT-GEKNNK-----QFQITETPELKVSLFY 57 KAKII LD P +E +FNP EYT + + ++ GE + +F + L + L + Sbjct: 8 KAKIINLDDPSQEVECLFNPKEYTFTKQNSWSRGETPSTNVPQLEFSGGQPATLSMHLLF 67 Query: 58 DTY------EKRTDVRK-KTKLLTS--LLDPKVSG-KNTK-KPPVCLFVWG-GFTYRGLL 105 DTY K DVRK T L S ++DP + K+T+ +PP F WG ++++ ++ Sbjct: 68 DTYTSARPGSKPRDVRKVYTDKLWSFMMIDPNLQDPKSTRGRPPKVRFQWGTSWSFKAVI 127 Query: 106 SKIEQKFTMFMENGTPVRSLLDVTFITEESDKTVEDN---RGLNACRKLWVVKSGDRLDL 162 + I QKFT+F+ +GTPVR+ LDVTF E ++ G ++W V+ GD L Sbjct: 128 TNITQKFTLFLVDGTPVRAELDVTFQQIEDTANLQPQNPTSGGVGGERVWRVRDGDTLAW 187 Query: 163 IANEALKEPLAWRRIAELNKI 183 IA ++ + WR IAE N + Sbjct: 188 IAYKSYGDATRWRPIAEANGL 208 >A7NMW5.1 A7NMW5_ROSCS Peptidoglycan-binding LysM Length = 225 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 108/201 (53%), Gaps = 21/201 (10%) Query: 4 KAKIIPLDMPVGAIEVMFNPNEYTVSFEGKYT-GEKNNK-----QFQITETPELKVSLFY 57 KAKII LD P +E +FNP EYT + + ++ GE + +F + L + L + Sbjct: 8 KAKIINLDNPSQEVECLFNPKEYTFTKQNSWSRGETPSTNVPQLEFSGGQPATLSMHLLF 67 Query: 58 DTY------EKRTDVRK-KTKLLTS--LLDPKVSG-KNTK-KPPVCLFVWGG-FTYRGLL 105 DTY K DVRK T L S ++DP + K+T+ +PP F WG ++++ ++ Sbjct: 68 DTYTSARPGSKPKDVRKVYTDKLWSFMMIDPDLKDPKSTRGRPPKVRFQWGASWSFKAVI 127 Query: 106 SKIEQKFTMFMENGTPVRSLLDVTFITEESDKTVEDN---RGLNACRKLWVVKSGDRLDL 162 + I QKFT+F+ +GTPVR+ LDVTF E ++ G ++W V+ GD L Sbjct: 128 TNITQKFTLFLVDGTPVRAELDVTFQQIEDTANLQPQNPTSGGIGGERVWRVREGDTLAW 187 Query: 163 IANEALKEPLAWRRIAELNKI 183 IA ++ + WR IAE N + Sbjct: 188 IAYKSYGDATRWRPIAEANGL 208 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,249,242,552 Number of extensions: 50338129 Number of successful extensions: 110748 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 110712 Number of HSP's successfully gapped: 39 Length of query: 203 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 74 Effective length of database: 1,845,385,268 Effective search space: 136558509832 Effective search space used: 136558509832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)