BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0017.p (347 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I234.1 B8I234_CLOCE Phage protein D 485 e-135 Q2W630.1 Q2W630_MAGMM Phage protein D 246 2e-63 B2IZI6.1 B2IZI6_NOSP7 Putative uncharacterized protein 192 5e-47 B5WTJ9.1 B5WTJ9_9BURK Rhs element Vgr protein 184 8e-45 A7NMW4.1 A7NMW4_ROSCS Rhs element Vgr protein 179 5e-43 >B8I234.1 B8I234_CLOCE Phage protein D Length = 348 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 228/348 (65%), Positives = 290/348 (83%), Gaps = 1/348 (0%) Query: 1 MGTS-VANYKIELNGSKLSAELAAAVEGVTLEDEINLPALFSIQMNMVNSGSGMWRGTDL 59 MGT+ VANYKI+LNGS SA+L A+E +T+EDEINLP++F IQMNMV+SG+G WRG DL Sbjct: 1 MGTTNVANYKIKLNGSDFSADLFNAIETLTVEDEINLPSMFRIQMNMVDSGNGKWRGIDL 60 Query: 60 KSIKPGDKVKLSLGLDKLQPMISGEITALDLNFGEHSVLDIRGYDLLHRLRMGTRSKAFL 119 K+ KPGDK+ +S+GLDK + M+SGEIT+L+L EHS+++IRGYDLLHRLRMGTR+K F Sbjct: 61 KTFKPGDKLSISMGLDKPELMLSGEITSLELLVAEHSLVEIRGYDLLHRLRMGTRNKVFT 120 Query: 120 KKKDSDIASEIAKEHGLTPVVDDTGTVYPYIFQNNQSNYEFLVERAAMLDYELYADDKKL 179 KKKDSDIASEIA+EHGLTP VDDT T+YPY+FQNN SNY+FL++RAA LDYELYA DKKL Sbjct: 121 KKKDSDIASEIAREHGLTPQVDDTKTIYPYVFQNNISNYDFLLKRAAYLDYELYAQDKKL 180 Query: 180 YFVKSRSVKAPGLPELSFKKDFERLNLELRALTRGSKVKVKGWDVXXXXXXXXXXXTGDE 239 YFVKSR+ KAP LPE ++K+D+E LNLELRALT+GS+V V+GW+V GDE Sbjct: 181 YFVKSRAPKAPELPEFNYKRDYEELNLELRALTKGSEVTVRGWNVKEKKEIEALAKKGDE 240 Query: 240 TTKMGGTESGFSLSAKAIEESPVAIMAEHLLDMSEAKTLASAAYNSRLRDFIAGEGMCWG 299 +TKMGG ESG+ ++ K+IE++PV+ E+L+D+SE K A+AAYNS LR+FI GEG C+G Sbjct: 241 STKMGGKESGYDITVKSIEKAPVSFWVENLIDVSEGKAAAAAAYNSLLREFITGEGKCYG 300 Query: 300 NPQLRAGQTVKLLGLGERFSGIYYIVSTVHKIDSKGYTTTFRVKRTGL 347 NP +RAG++VKLLG+ ERF+G+YYI+ST+H ID +GY T F+VKRTG+ Sbjct: 301 NPLVRAGKSVKLLGIDERFTGVYYIISTIHNIDKQGYMTKFKVKRTGI 348 >Q2W630.1 Q2W630_MAGMM Phage protein D Length = 347 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/334 (39%), Positives = 200/334 (59%), Gaps = 5/334 (1%) Query: 15 SKLSAELAAAVEGVTLEDEINLPALFSIQMNMVNSGSGMWRGTDLKSIKPGDKVKLSLGL 74 S L L A++ V ++ EINLPA+F+ MNMV S SG W+G +L KPGD++ + +G+ Sbjct: 16 SPLPMALVASIVTVEVQHEINLPAMFNFTMNMV-SPSGNWQGANLDYFKPGDEITIKMGI 74 Query: 75 DKLQPMISGEITALDLNFGEHSVLDIRGYDLLHRLRMGTRSKAFLKKKDSDIASEIAKEH 134 ++LQ +I GEITA++ FGE+S IRG+D +HRL+ GT +K F D+DI ++A+ Sbjct: 75 ERLQTLIVGEITAIEPRFGEYSTATIRGFDRMHRLQFGTSTKVFENLSDNDIVIQVARSA 134 Query: 135 GLTPVVDDTGT-VYPYIFQNNQSNYEFLVERAAMLDYELYADDKKLYFVKSRSVKAPGLP 193 GL+ +GT + Y+ Q Q+NY+FL++RAA +++EL D L F S K+P + Sbjct: 135 GLSVNAQGSGTEINVYVQQRQQNNYQFLLKRAAQINHELLMDGTTLIFRPSGEGKSP-VK 193 Query: 194 ELSFKKDFERLNLELRALTRGSKVKVKGWDVXXXXXXXXXXXTGDETTKMGGTESGFSLS 253 L+F +D + ++L+LR T+GS V V +D +G +MGG E+G+ + Sbjct: 194 TLTFPRDLDSIDLDLRIPTQGSSVTVHSFDPATNKPISATSRSGSVQERMGGRENGYQM- 252 Query: 254 AKAIEESPVAIMAEHLLDMSEAKTLASAAYNSRLRDFIAGEGMCWGNPQLRAGQTVKLLG 313 A +S V+I + + + +A A Y + L FI G G+P L AG VKL G Sbjct: 253 AGDFPDSAVSIEQLSITSVEALQVVADAQYQANLNRFIEGSASLVGDPDLVAGSNVKLSG 312 Query: 314 LGERFSGIYYIVSTVHKI-DSKGYTTTFRVKRTG 346 L +RF GIYYIVS+ H D++GY T R++R+G Sbjct: 313 LSQRFDGIYYIVSSTHTYGDTQGYATDVRLRRSG 346 >B2IZI6.1 B2IZI6_NOSP7 Putative uncharacterized protein Length = 356 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 186/344 (54%), Gaps = 7/344 (2%) Query: 7 NYKIELNGSKLSAELAAAVEGVTLEDEINLPALFSIQMNMVNSGSGMWRGTDLKSIKPGD 66 N KI + L+AE+ A + V + +++ P +F +++ + D K G+ Sbjct: 11 NVKILVQNKPLAAEIEADLVSVLVSEDLEAPGMFELRLITWDLLKQEMTWVDDKLFDIGN 70 Query: 67 KVKLSLGLDK-LQPMISGEITALDLNFGEH--SVLDIRGYDLLHRLRMGTRSKAFLKKKD 123 KV++ +G ++ ++ ++ GEIT L+ + + +L +RG+DL HRL G+ +K+FLK KD Sbjct: 71 KVEIQMGYEQEIKTIMVGEITGLEPEYTQDVAPILVVRGHDLRHRLLRGSHTKSFLKIKD 130 Query: 124 SDIASEIAKEHGLTPVVDDTGTVYPYIFQNNQSNYEFLVERAAMLDYELYADDKKLYFVK 183 S+I S+IA+ G+T V D+ YI Q+NQ++++FL ERA + YE+ + LYF Sbjct: 131 SEIVSQIARTRGITAKVTDSKVKLEYILQHNQTDWDFLKERAKRIGYEVAMEQTTLYFRP 190 Query: 184 SRSVKAPGLPELSFKKDFERLNLELRALTRGSKVKVKGW--DVXXXXXXXXXXXTGDETT 241 ++ K L L++ D + L + + +V+VKGW G E Sbjct: 191 HQNAKGKALT-LTYGADLQEFLPRLSTMNQVQQVEVKGWIYQEKNKKEVSGKAEVGKEGG 249 Query: 242 KMGGTESGFSLSAKAIEESPVAIMAEHLLDMSEAKTLASAAYNSRLRDFIAGEGMCWGNP 301 MGG SG KA ES I+ + + EA ++A + +I GEG C GNP Sbjct: 250 TMGGLTSGVKAVRKAFGESSHTIVNQPVSSKEEADSMALGQFQDMAIAYITGEGTCQGNP 309 Query: 302 QLRAGQTVKLLGLGERFSGIYYIVSTVHKI-DSKGYTTTFRVKR 344 LRAG+ +++LG+G+RFSG+YYI S H ++GY T+F V R Sbjct: 310 NLRAGKVIEILGIGKRFSGLYYIKSAEHSCYPNQGYKTSFTVGR 353 >B5WTJ9.1 B5WTJ9_9BURK Rhs element Vgr protein Length = 356 Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 112/348 (32%), Positives = 182/348 (52%), Gaps = 9/348 (2%) Query: 3 TSVANYKIELNGSKLSAELAAAVEGVTLEDEINLPALFSIQMNMVNSGSGMWRGTDLKSI 62 T + +++NG+ L A + V + ++++ ++F+ + ++ + D Sbjct: 9 TLAPEFGLKINGAPLPEAATADLIDVCVLEDVDAMSMFTFSLTCYDTAQMKVKWVDEAIF 68 Query: 63 KPGDKVKLSLGL-DKLQPMISGEITALDLNFGEHS--VLDIRGYDLLHRLRMGTRSKAFL 119 + G+ V++ +G D Q + SGEIT L+ F E++ L +RGYD HRL +++++ Sbjct: 69 REGNPVEIEIGYRDHRQVIFSGEITGLEPAFLENTPPTLTVRGYDRRHRLMRERKTRSYT 128 Query: 120 KKKDSDIASEIAKEHGLTPVVDDTGTVYPYIFQNNQSNYEFLVERAAMLDYELYADDKKL 179 KDSDIAS++A GL P V+D+ PY+FQ+NQ++ EFL+ RA + YE+ DD+ L Sbjct: 129 NVKDSDIASQLAGGAGLKPQVEDSKVTLPYVFQHNQTDLEFLLARAKRIHYEVVVDDRSL 188 Query: 180 YFVKSRSVKAPGLPELSFKKDFERLNLELRALTRG--SKVKVKGWDVXXXXXXXXXXXTG 237 + R K L+ + + E L R T G +V VKGWD G Sbjct: 189 IY---RPRKIDASETLTLRPEIELLEFRPRMSTMGQVQEVLVKGWDPKSKKEIVGRSGAG 245 Query: 238 DETTKMGGTESGFSLSAKAIEESPVAIMAEHLLDMSEAKTLASAAYNSRLRDFIAGEGMC 297 DE M G +SG S +S A + + + ++A +A + +I G+G+C Sbjct: 246 DEAGLMAGKKSGPSSVESIFGKSGGASVCAPVQNQADADLMAKQRFGEMALGYIRGDGVC 305 Query: 298 WGNPQLRAGQTVKLLGLGERFSGIYYIVSTVHKID-SKGYTTTFRVKR 344 G+P++RAG VKL GLG+RFSG+YY+ ST + KGY F +R Sbjct: 306 IGDPRMRAGIVVKLEGLGDRFSGLYYVTSTEQRFSLKKGYRVRFAARR 353 >A7NMW4.1 A7NMW4_ROSCS Rhs element Vgr protein Length = 593 Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 110/341 (32%), Positives = 182/341 (53%), Gaps = 10/341 (2%) Query: 5 VANYKIELNGSKLSAELAAAVEGVTLEDEINLPALFSIQMNMVNSGSGMWRGTDLKSIKP 64 V+++ ++L+G+ EL + +T+E+ ++LP + ++ ++N W D + P Sbjct: 10 VSDFYLKLDGADAPLELVRDILDITIENSLHLPDVATL---VINDRRLTW--VDDSRLAP 64 Query: 65 GDKVKLSLGLDK-LQPMISGEITALDLNFG-EHSVLDIRGYDLLHRLRMGTRSKAFLKKK 122 G + +++ ++ + + GEI ++ +F E + + +R +D LHRL G ++ FL Sbjct: 65 GKTLVVNVRRNRATETIFDGEIVEVEPHFDVEGARVVVRAFDRLHRLARGRYARTFLNVT 124 Query: 123 DSDIASEIAKEHGLTPVVDDTGTVYPYIFQNNQSNYEFLVERAAMLDYELYADDKKLYFV 182 DSD+ +IA E GL VD T V+ Y+ Q NQ+N EFL ERAA L Y LY D +KL+ V Sbjct: 125 DSDVIQQIAGEVGLQAQVDATSRVHEYLVQWNQTNLEFLRERAAALGYLLYVDGRKLFCV 184 Query: 183 KSRSVKAPGLPELSFKKDFERLNLELRALTRGSKVKVKGWDVXXXXXXXXXXXTGDETTK 242 K S +AP EL + +D + L + + ++V V+GWD TG T Sbjct: 185 KPPSARAP--VELKWGEDLSAFHPRLSTIDQVNEVNVRGWDPQKKEVVIGQGTTGAVTPA 242 Query: 243 MGGTESGFSLSAKAIEESPVAIMAEHLL-DMSEAKTLASAAYNSRLRDFIAGEGMCWGNP 301 +G + G +L+ KA + ++ E + SEA+ +A A N I +G GNP Sbjct: 243 IGVPDKGGALAKKAFSITAKDLLTESAVRSQSEAEQIAKAVLNQHESRCIEADGTAAGNP 302 Query: 302 QLRAGQTVKLLGLGERFSGIYYIVSTVHKIDSKGYTTTFRV 342 +++AG VK+ +G RFSG Y + S H+ ++ GY T F V Sbjct: 303 KIKAGAAVKITNIGIRFSGAYVVTSATHRYNAAGYVTDFSV 343 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,889,886,569 Number of extensions: 74759937 Number of successful extensions: 178141 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 178035 Number of HSP's successfully gapped: 66 Length of query: 347 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 211 Effective length of database: 1,779,438,163 Effective search space: 375461452393 Effective search space used: 375461452393 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)