BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0016.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I235.1 B8I235_CLOCE Rhs element Vgr protein 332 2e-89 Q74EH9.1 Q74EH9_GEOSL Putative uncharacterized protein 190 9e-47 B5WTK0.1 B5WTK0_9BURK Rhs element Vgr protein 175 4e-42 B2IZI7.1 B2IZI7_NOSP7 Rhs element Vgr protein 174 6e-42 B9ZIZ7.1 B9ZIZ7_NATMA Rhs element Vgr protein 172 2e-41 >B8I235.1 B8I235_CLOCE Rhs element Vgr protein Length = 239 Score = 332 bits (850), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 158/240 (65%), Positives = 203/240 (84%), Gaps = 1/240 (0%) Query: 1 MNEGPGITNFADSMINEGRIFGVMVGIVINNDSANHADKPGPGRVKVKIPLMGMPESNWA 60 M+EG I+NF + + + ++ GVM+G+VI NDSAN + KPG G VK++IPL+GM ESNWA Sbjct: 1 MSEGINISNFTEYIQRDEKVLGVMIGVVIKNDSANDSQKPGLGLVKLQIPLLGMKESNWA 60 Query: 61 RMASWMAGKERGAFCLPEVDDEVLVVFENGDVNRPYVIGSLWNGKDTPPETNKDGKNNIR 120 R+AS+MAGKERGAF LPEV DEVLV FENGDVN+P++IG+LWNGKDTPPE N DGKNNIR Sbjct: 61 RIASFMAGKERGAFFLPEVGDEVLVAFENGDVNKPFIIGALWNGKDTPPEKNSDGKNNIR 120 Query: 121 MFKSRSGHILQFADTEGKENITLTSAKGHVIRLDDKSGAEQIQIMDKSGKNKIVIDSKAN 180 + KSRSGHI +F+D G+E I L S+KGH++++DDKSGAE IQI+DKSG NK+ I +K N Sbjct: 121 VIKSRSGHIFEFSDKSGEERILLKSSKGHIVQIDDKSGAESIQIIDKSGSNKLTISTKDN 180 Query: 181 KLSVLSGQDIEISAPGGKLSLSAKTIEMKSSADTRIEASAGMEVKAAASMTIKGATVNIN 240 K+++ SG +IE SAP GKLS++AK IE+KSSA T+IEASAG+++KA+++MTIKGATVNIN Sbjct: 181 KITINSG-NIEFSAPNGKLSINAKDIEIKSSAATKIEASAGIDIKASSNMTIKGATVNIN 239 >Q74EH9.1 Q74EH9_GEOSL Putative uncharacterized protein Length = 218 Score = 190 bits (483), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 108/226 (47%), Positives = 138/226 (61%), Gaps = 23/226 (10%) Query: 16 NEGRIFGVMVGIVINNDSANHADKPGPGRVKVKIPLMG-MPESNWARMASWMAGKERGAF 74 +G+ GV VG+V A++ D G GRVKV+ P ES WAR+ + MAGK RG + Sbjct: 15 QKGKSPGVAVGVV-----ADNQDPEGMGRVKVRFPWKDDADESTWARVVTPMAGKGRGLW 69 Query: 75 CLPEVDDEVLVVFENGDVNRPYVIGSLWNGKDTPPETNKDGKNNIRMFKSRSGHILQFAD 134 LPEV DEVLV F++GDV PYV+GSLWNG DTPP N DG NNIR SRSGH L F D Sbjct: 70 FLPEVGDEVLVAFDHGDVQHPYVLGSLWNGTDTPPGDNGDGNNNIRKITSRSGHELVFDD 129 Query: 135 TEGKENITLTSAKGHVIRLDDKSGAEQIQIMDKSGKNKIVIDSKANKLSVLSGQDIEISA 194 T G E + + + GH I LDD G E+I+I DKSG NK+VIDS N + + S Sbjct: 130 TSGAEKVVIRTKAGHAITLDDAGGGEKIEIKDKSGSNKLVIDSAQNSIGIESSM------ 183 Query: 195 PGGKLSLSAKTIEMKSSADTRIEASAGMEVKAAASMTIKGATVNIN 240 KL++ + +E++S A+ M +KA A MTI+G+ V IN Sbjct: 184 ---KLTIKGQMVEIQSDAN--------MTLKAGAVMTIQGSMVKIN 218 >B5WTK0.1 B5WTK0_9BURK Rhs element Vgr protein Length = 216 Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 95/207 (45%), Positives = 127/207 (61%), Gaps = 22/207 (10%) Query: 35 NHADKPGPGRVKVKIPLMGMP-ESNWARMASWMAGKERGAFCLPEVDDEVLVVFENGDVN 93 N+ D G RVKV+ P + ESNWAR+A+ MAG RGA+ LPEVDDEVLV FE+G V Sbjct: 30 NNQDPDGMHRVKVRFPWLNQDDESNWARVATMMAGNGRGAYFLPEVDDEVLVAFEHGSVE 89 Query: 94 RPYVIGSLWNGKDTPPETNKDGKNNIRMFKSRSGHILQFADTEGKENITLTSAKGHVIRL 153 P+VIGSLWNGKD E+N + KN+ R FKSRSGHI +RL Sbjct: 90 HPFVIGSLWNGKDVAHESNANCKNDNRGFKSRSGHI---------------------VRL 128 Query: 154 DDKSGAEQIQIMDKSGKNKIVIDSKANKLSVLSGQDIEISAPGGKLSLSAKTIEMKSSAD 213 D +G E+I+I+DK+G NKI I + N +++ + DI I + GKL+L IE+ S AD Sbjct: 129 SDAAGDEKIEIIDKTGNNKITISASGNTIAIEAQGDISIRSTTGKLTLQGVGIEIDSKAD 188 Query: 214 TRIEASAGMEVKAAASMTIKGATVNIN 240 +I A + +++ + M+I GA V IN Sbjct: 189 VKISAMSTLDMTSTGPMSISGALVKIN 215 >B2IZI7.1 B2IZI7_NOSP7 Rhs element Vgr protein Length = 235 Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 133/227 (58%), Gaps = 35/227 (15%) Query: 19 RIFGVMVGIVINNDSANHADKPGPGRVKVKIP-LMGMPESNWARMASWMAGKERGAFCLP 77 +GV +G+V NN D GRVKVK P L ES WAR+ + MAG +RG + LP Sbjct: 15 HFYGVTIGVVTNN-----KDPKKLGRVKVKFPWLSSEEESYWARVVTLMAGNDRGIYFLP 69 Query: 78 EVDDEVLVVFENGDVNRPYVIGSLWNGKDTPPETNKDGKNNIRMFKSRSGHILQFADTEG 137 EVDDEVLV FE GD+N PY++G+LWNGKD PP TN+DGKNN R+ KSRSGH++ DTE Sbjct: 70 EVDDEVLVAFEQGDMNFPYILGALWNGKDKPPITNEDGKNNQRVIKSRSGHMIVLDDTE- 128 Query: 138 KENITLTSAKGHVIRLDDKSGAEQIQIMDKSGKNKIVIDSKANKLSVLSGQDIEISAPG- 196 EN EQI I DK+GKNKIVI+SK NK+++ +D+ I G Sbjct: 129 -EN-------------------EQIIIQDKTGKNKIVINSKENKMNIQVEKDLTIETKGK 168 Query: 197 -------GKLSLSAKTIEMKSSADTRIEASAGMEVKAAASMTIKGAT 236 +S+ K +++K+ + ++E A +KA + ++ + Sbjct: 169 IILKSSDDDISIDCKNLQIKTQQNYQLEVGANCTIKAKSKYKLEAQS 215 >B9ZIZ7.1 B9ZIZ7_NATMA Rhs element Vgr protein Length = 248 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/249 (39%), Positives = 146/249 (58%), Gaps = 24/249 (9%) Query: 10 FADSMINEGRIFGVMVGIVINNDSANHADKPGPGRVKVKIPLMGMP-ESNWARMASWMAG 68 F D ++G + GV+VGIV +N+ D G GRVK++ P ES WAR+A+ MAG Sbjct: 6 FFDGETSDGGMQGVVVGIVTDNE-----DPKGLGRVKLQFPWRDADDESYWARIATPMAG 60 Query: 69 KERGAFCLPEVDDEVLVVFENGDVNRPYVIGSLWNGKDTPPETNKDGKNNIRMFKSRSGH 128 E G++ LPEVDDEVLV FENGD++RPYV+GSLWNGK PP+ N DG N++R ++RS H Sbjct: 61 NEYGSYFLPEVDDEVLVAFENGDIHRPYVVGSLWNGKQEPPQQN-DGDNDVREIRTRSEH 119 Query: 129 ILQF--ADTEGKENITLTSAKGHVIRLDDKSGAEQIQIMDKSGKNKIVIDSKANKLSVLS 186 + F ++T+ +++GH I +DD G E I I D S N+IV++S + + V + Sbjct: 120 RITFDDDRDGDGGSVTIQTSEGHEIVIDDDDGRETIAIRDDSDTNRIVLNSSDDSVVVDA 179 Query: 187 GQDIEISAPGGKLS---------------LSAKTIEMKSSADTRIEASAGMEVKAAASMT 231 G +E+SA K+ S T+++ A+ I++ M V + +T Sbjct: 180 GDTLELSAKNVKIDGDKSVEITGGTTVDVKSKNTVDISGKANVDIDSGGIMSVDSTGPLT 239 Query: 232 IKGATVNIN 240 IKGA + +N Sbjct: 240 IKGAIIRLN 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.130 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,468,034,502 Number of extensions: 64214763 Number of successful extensions: 112727 Number of sequences better than 1.0e-05: 533 Number of HSP's gapped: 112551 Number of HSP's successfully gapped: 533 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)