BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0011.p (290 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I239.1 B8I239_CLOCE Putative uncharacterized protein 339 2e-91 B2IZJ0.1 B2IZJ0_NOSP7 Putative uncharacterized protein 149 2e-34 C1Y870.1 C1Y870_9ACTO Putative uncharacterized protein 96 3e-18 C1PJY5.1 C1PJY5_9ACTN Putative uncharacterized protein 89 4e-16 A5UTV5.1 A5UTV5_ROSS1 Putative uncharacterized protein 87 2e-15 >B8I239.1 B8I239_CLOCE Putative uncharacterized protein Length = 289 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 157/289 (54%), Positives = 207/289 (71%) Query: 1 MPLPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQ 60 M LP+ L ++ F++LV +AK+LIP+Y P+WTN+NPSDPGITL+ELFAW EM++YRIDQ Sbjct: 1 MSLPIQKLGEITFEDLVREAKSLIPMYAPEWTNHNPSDPGITLVELFAWLCEMIIYRIDQ 60 Query: 61 VTEESQLQFXXXXXXXXXXXXXXTSGIRRGVKQFSECYRAVTAADFQLLAKQSLLDIPGI 120 V E++ L+F TSGIRRGV+Q ++C RAVT DF+ LA ++L++ PGI Sbjct: 61 VPEKNNLRFLKLLGTQLENREELTSGIRRGVQQLTQCTRAVTTEDFEFLALKALMEKPGI 120 Query: 121 LDTYPDLAVRTLCLINTDMENGTGVNKEAFGHVSVVLILQTDNQKDLLREMTQIKQSVKA 180 +TYPDL RT+CL N DMEN FGH+S++LI+ T NQ DL +E IKQ +K Sbjct: 121 KETYPDLIARTICLPNRDMENNKTEEAGQFGHISIILIMSTKNQNDLTKETYDIKQYIKK 180 Query: 181 YLDARKLLTTRVHVVEPDYRDIVIEMTVSAKDKSIGSTVIDSITRFLDPVSGGEEGLGWL 240 YL RK+LT RVHVV+PDY++I I M V A DK +G V D I +++DP++GGE GW Sbjct: 181 YLLERKVLTNRVHVVDPDYQEIRINMQVVANDKKMGDMVRDVIEKYIDPITGGENKNGWP 240 Query: 241 PGRKLYASDLYHLVEGISGIDHVTSVALDSPDLLPFQLFKLKDLKVEVE 289 GR LYASDLY++VEGI GIDHV + LD+P L P+QL +LK+L +EVE Sbjct: 241 LGRNLYASDLYYIVEGIKGIDHVKHMELDAPLLKPYQLIRLKELSIEVE 289 >B2IZJ0.1 B2IZJ0_NOSP7 Putative uncharacterized protein Length = 315 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 157/288 (54%), Gaps = 34/288 (11%) Query: 1 MPLPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQ 60 M LP+PNLDD + L+ DA + IPL P+WT++NP+D GI LIEL AW +EMVLYR++Q Sbjct: 1 MTLPLPNLDDRSYANLLEDAISQIPLEYPEWTDHNPTDTGIILIELLAWLTEMVLYRVNQ 60 Query: 61 VTEESQLQFXXXXX----------XXXXXXXXXTSGIRRGVKQFSECYRAVTAADFQLLA 110 + +E+ F S I++ + + + YRA+T DF+ L Sbjct: 61 IPDENYASFLSLLKGEEWNLPINISTQERQNILQSEIQKTLLEVRKIYRAITPEDFEKLV 120 Query: 111 KQSLLDIPGILDTYPD--LAVRTLCLINTDMENGTGVNKEAFGHVSVVLILQTDNQKDLL 168 + D Y D R CL ++E+ + + A GH+S+V++ + DN Sbjct: 121 ---IFDWNK--SQYADNLKIARVKCLAQCNLESTS--DNFAKGHISLVVVPE-DN----- 167 Query: 169 REMTQIK--QSVKAYLDARKLLTTRVHVVEPDYRDIVIEMTV----SAKDKSIGSTVIDS 222 E+TQ+ + + +LD R+LLTTR+H++EP+Y I IE + A+ +++ + Sbjct: 168 -EITQVNKYEPLFKFLDDRRLLTTRLHILEPEYVSIAIESELVLQDGAQAEAVKTQAEKE 226 Query: 223 ITRFLDPVSGGE--EGLGWLPGRKLYASDLYHLVEGISGIDHVTSVAL 268 + F +P+ + +G GW GR +Y S+LY L++ + G+D+V ++ + Sbjct: 227 VKMFFEPLRSQKYWQGKGWPFGRSVYLSELYKLLDDLEGVDYVENLQI 274 >C1Y870.1 C1Y870_9ACTO Putative uncharacterized protein Length = 653 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 42/69 (60%), Positives = 52/69 (75%) Query: 1 MPLPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQ 60 M LP PNLDD F ++V +AK LIP Y P+WTN+N SDPG+ LIELFAW SEMVLYR++Q Sbjct: 1 MALPAPNLDDRTFQDIVDEAKRLIPRYTPEWTNHNLSDPGVALIELFAWMSEMVLYRVNQ 60 Query: 61 VTEESQLQF 69 V + + F Sbjct: 61 VPDRLYVHF 69 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 26/196 (13%) Query: 89 RGVKQFSECYRAVTAADFQLLAKQSLLDIPGILDTYPDLAVRTLCLINTDMENGTGVNKE 148 RG RAVTA DF+ LA +S +++ R CL + G G + Sbjct: 450 RGPMTLRTGQRAVTAGDFERLALESSVEV-----------ARARCLPSA---TGRGPVR- 494 Query: 149 AFGHVSVVLILQTDNQKDLLRE---MTQIKQSVKAYLDARKLLTTRVHVVEPDYRDIVIE 205 + VV ++TD + L + + +++ +LD +++ T + V P Y+ + + Sbjct: 495 ----LLVVPAVRTDPKAQQLDDYALAAPLMRTITDHLDRHRIVGTAIEVGTPYYQGVSVA 550 Query: 206 MTVSAKDKS----IGSTVIDSITRFLDPVSGGEEGLGWLPGRKLYASDLYHLVEGISGID 261 V A + ID +TR+++P++GG +G GWL L A+ + L+E + G++ Sbjct: 551 ALVHAPPGRPLALVRQRAIDELTRYINPLTGGADGAGWLFDVDLNAAAIAQLLETVEGVE 610 Query: 262 HVTSVALDSPDLLPFQ 277 V V L DL Q Sbjct: 611 RVDEVQLFEFDLRTRQ 626 >C1PJY5.1 C1PJY5_9ACTN Putative uncharacterized protein Length = 650 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 41/69 (59%), Positives = 50/69 (72%) Query: 1 MPLPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQ 60 M LP P LDD F ++V +AK LIP Y P+WTN+N SDPG+ LIELFAW SE VLYRI+Q Sbjct: 1 MGLPTPELDDRRFQDIVDEAKRLIPRYCPEWTNHNVSDPGVALIELFAWMSETVLYRINQ 60 Query: 61 VTEESQLQF 69 V + +F Sbjct: 61 VPDRLYTKF 69 >A5UTV5.1 A5UTV5_ROSS1 Putative uncharacterized protein Length = 676 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/64 (56%), Positives = 52/64 (81%) Query: 1 MPLPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQ 60 MPLP PNLDD F ++V +AK LIP + P+WT++N SDPG+ LIELFAW ++++LYR++Q Sbjct: 1 MPLPTPNLDDRHFQDIVDEAKRLIPRFCPEWTDHNVSDPGVALIELFAWMTDLLLYRVNQ 60 Query: 61 VTEE 64 V ++ Sbjct: 61 VPDK 64 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 26/182 (14%) Query: 99 RAVTAADFQLLAKQSLLDIPGILDTYPDLAVRTLCLINTDMENGTGVNKEAFGHVSVVLI 158 RAVTA D++ LA++ + V C I + G+ + G V V ++ Sbjct: 471 RAVTADDYEHLAREVV-------------GVARACCIAPGAQPGSPADPRP-GQVLVCIL 516 Query: 159 LQTDNQ-----KDLLREMTQIKQSVKAYLDARKLLTTRVHVVEPDYRDIVIE--MTVSAK 211 QTDN + L +++ V YLD R+ L + V Y + +E + V A+ Sbjct: 517 PQTDNPVGRIPPEALTLSAELRARVLEYLDRRRPLGIALDVRPVQYLWVSVEVRLRVPAR 576 Query: 212 D-----KSIGSTVIDSITRFLDPVSGGEEGLGWLPGRKLYASDLYHLVEGISGIDHVTSV 266 +++ +++ R+L+P GG +G GW GR L+ S++Y L++ + I+ V V Sbjct: 577 SDQALIRAVQQDAEETLYRYLNPYVGGPQGDGWPFGRDLHVSEIYALMQRLPQIEFVEEV 636 Query: 267 AL 268 + Sbjct: 637 QI 638 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,615,998,314 Number of extensions: 62741227 Number of successful extensions: 149933 Number of sequences better than 1.0e-05: 53 Number of HSP's gapped: 149902 Number of HSP's successfully gapped: 79 Length of query: 290 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 156 Effective length of database: 1,798,280,193 Effective search space: 280531710108 Effective search space used: 280531710108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)