BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0569.0010.p
         (249 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8I240.1 B8I240_CLOCE Phage tail protein                              240   7e-62

>B8I240.1 B8I240_CLOCE Phage tail protein
          Length = 245

 Score =  240 bits (613), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 118/248 (47%), Positives = 163/248 (65%), Gaps = 4/248 (1%)

Query: 1   VSSQNDYSYVQYLPRVFQQKAGESDEQFFLGRFLKAFEAMLSGKTGAAGEESVGIEALLD 60
           +S+     Y QYLPR+FQ   G + +  FLGR LK+FE +LSGKT    +E+ GIE +LD
Sbjct: 1   MSNYESSKYTQYLPRIFQ--TGNNKDGDFLGRLLKSFEQILSGKTEM--QETRGIEEILD 56

Query: 61  GLHQYFDPGRAPSQFLPWXXXXXXXXXXXXXXXXXXQDNRDRALAPMQILPLPAARSTVN 120
               Y DP + P QFL W                  +D   +    +QILPLP  R++VN
Sbjct: 57  DFDMYLDPDQTPPQFLEWLAGWVALDLEDGIEFFGAEDTAGKNANQVQILPLPEKRTSVN 116

Query: 121 RNLISSIVRLYKKRGTLDGLAEYLQVYAGEEAAIQINDYEEPVRCGIGQRVGINTMVGAA 180
           R +I +IV+LYKKRGT DGL EYLQ+Y GEE  I IN++++  R G  + +G NTMVG++
Sbjct: 117 REMIGAIVQLYKKRGTCDGLLEYLQLYTGEETTISINEFQDTARIGESREIGRNTMVGSS 176

Query: 181 EPSYFSVHVILPAYSRSILQNKVQILQEVIRKEKPFYTNSSLNIEVPKMCLGVYGRVGME 240
            PS+F V+ ++PA+S+S+L+NKV +++ VI  EKPFYTN  LN+E+P+M +GVY +VG E
Sbjct: 177 SPSFFCVNAMIPAHSKSMLENKVGLIRRVIEDEKPFYTNYRLNVEIPEMRVGVYSKVGKE 236

Query: 241 TLLGGMTE 248
           TLLGGM +
Sbjct: 237 TLLGGMID 244


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,297,140,274
Number of extensions: 47282286
Number of successful extensions: 98704
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 98715
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 117
Effective length of database: 1,817,122,223
Effective search space: 212603300091
Effective search space used: 212603300091
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)