BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0569.0003.p
         (162 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B7B349.1 B7B349_9FIRM Putative uncharacterized protein                105   2e-21
Q24XK0.1 Q24XK0_DESHY Putative uncharacterized protein                 88   2e-16
C4IMH8.1 C4IMH8_CLOBU Transcriptional regulator, TrmB                  86   1e-15
C3KT18.1 C3KT18_CLOB6 Transcriptional regulator, MarR family           83   8e-15
B1QKJ2.1 B1QKJ2_CLOBO Transcriptional regulator, MarR family           83   8e-15

>B7B349.1 B7B349_9FIRM Putative uncharacterized protein
          Length = 166

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 83/141 (58%)

Query: 2   ELLTLARNVGILHRQTQTYIAAIGSALDISFSECILLMNIYGNEGITQEELSALLFIDKA 61
           E + + R   +LHR++Q ++      L +++SE ++L+ IY +EG  Q+EL+ +L++DKA
Sbjct: 3   EYINIGRWFSVLHRRSQIFVVEACEKLHLTYSEYVMLLRIYDHEGARQDELATMLYLDKA 62

Query: 62  ATARSLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAWEKVTTGGMDEE 121
              R++  LEKKG++ RE    D+RAK +++T+ G E  AY  N ++ W       M   
Sbjct: 63  VVTRTMTMLEKKGLVYREQDARDKRAKHVYLTEYGKEQHAYLRNVIQRWVDYLVADMAPA 122

Query: 122 AKDQVFKGLQRMAEQSMRADL 142
             + + KG   + +++ RAD+
Sbjct: 123 DVETIVKGFDYLVDRACRADI 143


>Q24XK0.1 Q24XK0_DESHY Putative uncharacterized protein
          Length = 153

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 6   LARNVGILHRQTQTYIAAIGSALDISFSE--CILLMNIYGNEGITQEELSALLFIDKAAT 63
           L + +  +HR  QT+   +    +++ S+   I L+N+Y N GI QEELS  + +DK  T
Sbjct: 5   LGKYISTIHRYGQTFFNPLLEKYNLNGSQRYYIFLLNLYDNNGIIQEELSKKVRLDKVTT 64

Query: 64  ARSLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAWEKVTTGGMDEEAK 123
            R+LQ LE++G I R    EDRRA++++ T K  E +    N    W +V  G + E  +
Sbjct: 65  TRALQKLEQEGYIYRIVSEEDRRAQRIYTTPKAEEIREELENIFSNWNEVMLGNLSENQR 124

Query: 124 DQVFKGLQRM 133
            Q+FK ++++
Sbjct: 125 KQLFKLMEQI 134


>C4IMH8.1 C4IMH8_CLOBU Transcriptional regulator, TrmB
          Length = 149

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 75/119 (63%), Gaps = 1/119 (0%)

Query: 6   LARNVGILHRQTQTYIAAIGSALDISFSECILLMNIYGNEGITQEELSALLFIDKAATAR 65
           + +N+G +HR +  Y +   S  +I   +C LL+ +Y N+GITQEELS++L +DK   AR
Sbjct: 11  IGKNIGKVHRMSMMYFSKKFSKFNIGAGQCFLLVRLYENQGITQEELSSMLSLDKTTIAR 70

Query: 66  SLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAW-EKVTTGGMDEEAK 123
           +L+ L+ +G I+R  + +D+R+  + VT+K  + +   +  L +W EK+ +   ++E+K
Sbjct: 71  NLKKLDDQGYIKRIKREDDKRSYSIDVTEKSLKIKDEVYRILHSWEEKLNSCLTNDESK 129


>C3KT18.1 C3KT18_CLOB6 Transcriptional regulator, MarR family
          Length = 145

 Score = 83.2 bits (204), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 60/109 (55%)

Query: 5   TLARNVGILHRQTQTYIAAIGSALDISFSECILLMNIYGNEGITQEELSALLFIDKAATA 64
            + R + +L+R +  YI        I   + I L+ ++ N G  QEE+S +L IDK  TA
Sbjct: 7   CVGRYISMLYRASNCYINKELCKYGIGSGQYIFLLYVFNNNGCNQEEISTVLNIDKGTTA 66

Query: 65  RSLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAWEKV 113
           R+LQ LEK+G I +E    DRR   + +T KG+E +      L +WEK+
Sbjct: 67  RALQKLEKEGYINKEVDKNDRRINHIIITKKGSEIKDIIIKILNSWEKI 115


>B1QKJ2.1 B1QKJ2_CLOBO Transcriptional regulator, MarR family
          Length = 145

 Score = 83.2 bits (204), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 60/109 (55%)

Query: 5   TLARNVGILHRQTQTYIAAIGSALDISFSECILLMNIYGNEGITQEELSALLFIDKAATA 64
            + R + +L+R +  YI        I   + I L+ ++ N G  QEE+S +L IDK  TA
Sbjct: 7   CVGRYISMLYRASNCYINKELCKYGIGSGQYIFLLYVFNNNGCNQEEISTVLNIDKGTTA 66

Query: 65  RSLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAWEKV 113
           R+LQ LEK+G I +E    DRR   + +T KG+E +      L +WEK+
Sbjct: 67  RALQKLEKEGYINKEVDKNDRRINHIIITKKGSEIKDIIIKILNSWEKI 115


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 845,464,684
Number of extensions: 30109818
Number of successful extensions: 91388
Number of sequences better than 1.0e-05: 227
Number of HSP's gapped: 91527
Number of HSP's successfully gapped: 227
Length of query: 162
Length of database: 3,060,696,203
Length adjustment: 122
Effective length of query: 40
Effective length of database: 1,911,332,373
Effective search space: 76453294920
Effective search space used: 76453294920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)