BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0568.0008.p (424 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9X5.1 B1D9X5_9BACL Oxidoreductase molybdopterin binding 483 e-134 Q828N8.1 Q828N8_STRAW Putative oxidoreductase 154 2e-35 Q0RSW9.1 Q0RSW9_FRAAA Putative reductase with Sulfite oxidase, m... 153 3e-35 C1R6M7.1 C1R6M7_9ACTO Sulfite oxidase-like oxidoreductase 150 3e-34 A8KY62.1 A8KY62_FRASN Oxidoreductase molybdopterin binding 146 4e-33 >B1D9X5.1 B1D9X5_9BACL Oxidoreductase molybdopterin binding Length = 416 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 239/422 (56%), Positives = 290/422 (68%), Gaps = 10/422 (2%) Query: 1 MGKALARVRKGYGKKLVSIHKWNAWXXXXXXXXXXXXXXXFWRELLGEGRVWLKWAHIGF 60 MG+ L R+RKG+G+KL +H WN W +WR +LGEGRVWLK HI Sbjct: 1 MGELLKRLRKGFGRKLAILHTWNGWIVVVLALSGVMLVMNYWRGVLGEGRVWLKELHIIV 60 Query: 61 GXXXXXXXXXXXXXAAKHWKRLKGKGPQKANVIFVLVLLAGWIVSGIVLWQFRLAGPGAA 120 G AAKHWK+L+GK QK NV VL LL GW +SG++LWQFR GP + Sbjct: 61 GLLSLVPVVFYLLLAAKHWKQLRGKAWQKFNVFVVLGLLVGWFISGVLLWQFRAVGPRVS 120 Query: 121 NSALLIHDLLTWIGLPIMIYHSITRVKWLKEPKKRSIVPETALESKDKIIGGTQKPAAAQ 180 N AL +HDLLTWIGLP +IYHSITR KWLKEP +R++ E ++K PAA+ Sbjct: 121 NQALTVHDLLTWIGLPYIIYHSITRAKWLKEPNRRTV----HTEREEKTGAAPIHPAAS- 175 Query: 181 GPQPMYSRRGFIKVAVGAGLAVTLGPTFVRW----IGKSLQXXXXXXXXXXXXXXXXXXX 236 PQ SRR F+K AVG G+AV +GP+F++W +G S+ Sbjct: 176 -PQSYMSRRSFVKWAVGGGIAVAVGPSFLKWTVNTLGVSIGSPSYEEIVTRDGNQLVPLP 234 Query: 237 XXXXDSAPPVGGGAEGSFRVYTVTDIPAFDNSNWSFTIDGLVDQKFTWNWEEFVKLQREV 296 SAPP+GGGA+G FR+Y+VT IP F N WSFTIDGLVD+ TWNWE+FVKL R+V Sbjct: 235 QPMPASAPPLGGGAKGEFRIYSVTPIPTFSNETWSFTIDGLVDKPMTWNWEQFVKLTRKV 294 Query: 297 QVSDFHCVTGWSVYKNTWEGLPLAKLLDMAGVSEQAAMVKFYSGDGVYTDSLTLAQAQME 356 QVSDFHCVTGWSVYKNTWEG+PL + L AG+ A MVKFYSGDGVYTD+LTL QAQM+ Sbjct: 295 QVSDFHCVTGWSVYKNTWEGIPLKQFLQEAGIKTNAKMVKFYSGDGVYTDALTLEQAQMD 354 Query: 357 DVMVAVMHDGKPIPNQLGGPVRLVTPQMYAYKSVKWLNRIELIDEDHVGYWEQRGYDKDA 416 D+MVA++HDG IP+ LGGPVRL+ P+MYAYKSVKWLNRIELID+DH+GYWE+RGYD DA Sbjct: 355 DIMVAMLHDGNLIPSDLGGPVRLIVPKMYAYKSVKWLNRIELIDKDHIGYWEERGYDIDA 414 Query: 417 WL 418 W+ Sbjct: 415 WV 416 >Q828N8.1 Q828N8_STRAW Putative oxidoreductase Length = 203 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/175 (46%), Positives = 106/175 (60%), Gaps = 5/175 (2%) Query: 245 PVGGGAEGSFRVYTVTD-IPAFDNSNWSFTIDGLVDQKFTWNWEEFVKLQREVQVSDFHC 303 P GGG FR Y+VT +P +N+ TIDGLVD ++ + L + V D C Sbjct: 21 PNGGG----FRYYSVTSSVPHKGEANYRLTIDGLVDHPTSFTLADLRALPQTRLVRDVQC 76 Query: 304 VTGWSVYKNTWEGLPLAKLLDMAGVSEQAAMVKFYSGDGVYTDSLTLAQAQMEDVMVAVM 363 VTGW V +EG+ L++LLD AGV A V+F DG YT+SLTLAQA+ DV+VA+ Sbjct: 77 VTGWRVPGTPFEGVRLSRLLDAAGVRSSARAVRFTCFDGAYTESLTLAQARRADVLVALR 136 Query: 364 HDGKPIPNQLGGPVRLVTPQMYAYKSVKWLNRIELIDEDHVGYWEQRGYDKDAWL 418 KP+ + GGPVRL MY YKS KWL+ I + ++ GYWE RGYD DAW+ Sbjct: 137 MQDKPLGHNHGGPVRLYVAPMYFYKSAKWLSGITVTEDVRPGYWEDRGYDVDAWV 191 >Q0RSW9.1 Q0RSW9_FRAAA Putative reductase with Sulfite oxidase, middle catalytic domain Length = 219 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/175 (45%), Positives = 103/175 (58%), Gaps = 6/175 (3%) Query: 245 PVGGGAEGSFRVYTVTD-IPAFDNSNWSFTIDGLVDQKFTWNWEEFVKLQREVQVSDFHC 303 PVGG FR YTVT +P ++ + GLVD+ T + ++++ V DF C Sbjct: 39 PVGG-----FRYYTVTSSVPRLGPDDYRLRVHGLVDRPMTLTLADLARMRQTTLVRDFQC 93 Query: 304 VTGWSVYKNTWEGLPLAKLLDMAGVSEQAAMVKFYSGDGVYTDSLTLAQAQMEDVMVAVM 363 VTGW V W G+ L LL AGV A + F S DGVYT+SLTLAQA DV+VA+ Sbjct: 94 VTGWRVGAVHWSGVLLRDLLAAAGVQPAATALTFRSFDGVYTESLTLAQATRPDVLVALT 153 Query: 364 HDGKPIPNQLGGPVRLVTPQMYAYKSVKWLNRIELIDEDHVGYWEQRGYDKDAWL 418 G P+ + GGPVRL MY YKS+KWL IE++D GYWE++GYD D W+ Sbjct: 154 MLGAPVTHDHGGPVRLYVAPMYGYKSIKWLGEIEVVDTVTPGYWERQGYDVDGWV 208 >C1R6M7.1 C1R6M7_9ACTO Sulfite oxidase-like oxidoreductase Length = 204 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/166 (45%), Positives = 103/166 (62%), Gaps = 1/166 (0%) Query: 254 FRVYTVTD-IPAFDNSNWSFTIDGLVDQKFTWNWEEFVKLQREVQVSDFHCVTGWSVYKN 312 FR+YTVT + D + + ++ GLVD+ ++ + L + V DF CVTGW V K Sbjct: 26 FRIYTVTGGVKTPDPTTYRLSVTGLVDRPQHYSLTDLAALPQTDMVRDFQCVTGWRVPKV 85 Query: 313 TWEGLPLAKLLDMAGVSEQAAMVKFYSGDGVYTDSLTLAQAQMEDVMVAVMHDGKPIPNQ 372 W G+ L +L +AGV A ++F S DG YT+SLTL QAQ D++VA+ G P+ + Sbjct: 86 PWSGVRLKDMLALAGVQSSAKALRFVSFDGTYTESLTLDQAQNPDMLVALKMLGNPVSHD 145 Query: 373 LGGPVRLVTPQMYAYKSVKWLNRIELIDEDHVGYWEQRGYDKDAWL 418 GGPVRL MY YKS+KWL+ I+++D H GYWE GYD DAW+ Sbjct: 146 HGGPVRLYAAPMYGYKSIKWLSEIQVVDAVHPGYWEGYGYDIDAWV 191 >A8KY62.1 A8KY62_FRASN Oxidoreductase molybdopterin binding Length = 227 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/169 (43%), Positives = 99/169 (58%), Gaps = 1/169 (0%) Query: 251 EGSFRVYTVT-DIPAFDNSNWSFTIDGLVDQKFTWNWEEFVKLQREVQVSDFHCVTGWSV 309 G FR Y+V +P ++++ + GLVD+ T ++ ++ + V DF CVTGW V Sbjct: 48 SGGFRYYSVVASVPERTSADYELRVHGLVDRPLTLTLDDLSRMPQTELVRDFQCVTGWRV 107 Query: 310 YKNTWEGLPLAKLLDMAGVSEQAAMVKFYSGDGVYTDSLTLAQAQMEDVMVAVMHDGKPI 369 W G+ LA LLD AG A + F S DG Y +SLT+ QA+ DV+VA+ PI Sbjct: 108 TSVRWTGVRLADLLDAAGTRPGATALTFRSFDGAYAESLTIDQARRPDVLVALTMLDGPI 167 Query: 370 PNQLGGPVRLVTPQMYAYKSVKWLNRIELIDEDHVGYWEQRGYDKDAWL 418 + GGPVRL MY YKS+KWL IE++D G+WEQRGYD D W+ Sbjct: 168 THDHGGPVRLYVAPMYGYKSIKWLAEIEVVDTVTPGFWEQRGYDVDGWI 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,479,126,661 Number of extensions: 97240311 Number of successful extensions: 215211 Number of sequences better than 1.0e-05: 1007 Number of HSP's gapped: 214224 Number of HSP's successfully gapped: 1007 Length of query: 424 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 286 Effective length of database: 1,760,596,133 Effective search space: 503530494038 Effective search space used: 503530494038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)