BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0568.0003.p (235 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9F1.1 B3K9F1_9BACI Response regulator receiver 305 2e-81 C1FRP7.1 C1FRP7_CLOBJ DNA-binding response regulator 301 2e-80 B1KUG7.1 B1KUG7_CLOBM DNA-binding response regulator 301 2e-80 B1IDG9.1 B1IDG9_CLOBK DNA-binding response regulator 301 2e-80 A7GAC3.1 A7GAC3_CLOBL DNA-binding response regulator 301 2e-80 >B3K9F1.1 B3K9F1_9BACI Response regulator receiver Length = 230 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 145/232 (62%), Positives = 188/232 (81%), Gaps = 2/232 (0%) Query: 1 MKQETILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRM 60 M TIL+VDDE EI+ L++IY RNEGY LL A G+EAL+ L+ VDLII+DVMMP+M Sbjct: 1 MSGVTILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKNHKVDLIILDVMMPQM 60 Query: 61 DGIAACMEIREEQNMPIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRR 120 DGI ACM+IREE N PIIMLSAK+ ++DKI GLSIGADDYV KPF+PLELVAR KSQLRR Sbjct: 61 DGIQACMKIREENNTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRR 120 Query: 121 YHRFNKEAPVKPNENELVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQVLS 180 Y + N ++ +ENE+ ++L++++A H V+V R++KLTPREFS+L LA ++G VLS Sbjct: 121 YKQLNNQSV--RDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLS 178 Query: 181 MEQIYTNVWSDPFLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKLD 232 M++IYT VW++PF++ NTVMVHIR +REKIE DP++P YI+TVWGIGYK++ Sbjct: 179 MDKIYTEVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230 >C1FRP7.1 C1FRP7_CLOBJ DNA-binding response regulator Length = 232 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/235 (61%), Positives = 185/235 (78%), Gaps = 5/235 (2%) Query: 1 MKQETILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRM 60 M E IL+VDDEKEI +L+DIY NEGY LKA +G+EAL+ L+ V LII+D+MMP+M Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60 Query: 61 DGIAACMEIREEQNMPIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRR 120 DGI ACM+IREE++MPIIMLSAK+ DMDKI+GL+ GADDY+ KPFNPLEL+AR KSQLRR Sbjct: 61 DGIEACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120 Query: 121 YHRFNKEAPVKPNENE--LVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQV 178 Y + N NENE + ED+ +++A HEV + + V+LTPREF ILELLAR++G V Sbjct: 121 YIKLNNS---NGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVV 177 Query: 179 LSMEQIYTNVWSDPFLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKLDR 233 S+E+IY VW + FLD NTVMVHIR +REKIE +P+ PRYI+TVWG+GYK+++ Sbjct: 178 FSIEKIYELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 >B1KUG7.1 B1KUG7_CLOBM DNA-binding response regulator Length = 232 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/235 (61%), Positives = 185/235 (78%), Gaps = 5/235 (2%) Query: 1 MKQETILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRM 60 M E IL+VDDEKEI +L+DIY NEGY LKA +G+EAL+ L+ V LII+D+MMP+M Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60 Query: 61 DGIAACMEIREEQNMPIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRR 120 DGI ACM+IREE++MPIIMLSAK+ DMDKI+GL+ GADDY+ KPFNPLEL+AR KSQLRR Sbjct: 61 DGIEACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120 Query: 121 YHRFNKEAPVKPNENE--LVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQV 178 Y + N NENE + ED+ +++A HEV + + V+LTPREF ILELLAR++G V Sbjct: 121 YIKLNNS---NGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVV 177 Query: 179 LSMEQIYTNVWSDPFLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKLDR 233 S+E+IY VW + FLD NTVMVHIR +REKIE +P+ PRYI+TVWG+GYK+++ Sbjct: 178 FSIEKIYELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 >B1IDG9.1 B1IDG9_CLOBK DNA-binding response regulator Length = 232 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/235 (61%), Positives = 185/235 (78%), Gaps = 5/235 (2%) Query: 1 MKQETILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRM 60 M E IL+VDDEKEI +L+DIY NEGY LKA +G+EAL+ L+ V LII+D+MMP+M Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60 Query: 61 DGIAACMEIREEQNMPIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRR 120 DGI ACM+IREE++MPIIMLSAK+ DMDKI+GL+ GADDY+ KPFNPLEL+AR KSQLRR Sbjct: 61 DGIEACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120 Query: 121 YHRFNKEAPVKPNENE--LVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQV 178 Y + N NENE + ED+ +++A HEV + + V+LTPREF ILELLAR++G V Sbjct: 121 YIKLNNS---NGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVV 177 Query: 179 LSMEQIYTNVWSDPFLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKLDR 233 S+E+IY VW + FLD NTVMVHIR +REKIE +P+ PRYI+TVWG+GYK+++ Sbjct: 178 FSIEKIYELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 >A7GAC3.1 A7GAC3_CLOBL DNA-binding response regulator Length = 232 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/235 (61%), Positives = 185/235 (78%), Gaps = 5/235 (2%) Query: 1 MKQETILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRM 60 M E IL+VDDEKEI +L+DIY NEGY LKA +G+EAL+ L+ V LII+D+MMP+M Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60 Query: 61 DGIAACMEIREEQNMPIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRR 120 DGI ACM+IREE++MPIIMLSAK+ DMDKI+GL+ GADDY+ KPFNPLEL+AR KSQLRR Sbjct: 61 DGIEACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120 Query: 121 YHRFNKEAPVKPNENE--LVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQV 178 Y + N NENE + ED+ +++A HEV + + V+LTPREF ILELLAR++G V Sbjct: 121 YIKLNNS---NGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVV 177 Query: 179 LSMEQIYTNVWSDPFLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKLDR 233 S+E+IY VW + FLD NTVMVHIR +REKIE +P+ PRYI+TVWG+GYK+++ Sbjct: 178 FSIEKIYELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,409,733,616 Number of extensions: 57187920 Number of successful extensions: 240440 Number of sequences better than 1.0e-05: 29536 Number of HSP's gapped: 210860 Number of HSP's successfully gapped: 29703 Length of query: 235 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 104 Effective length of database: 1,826,543,238 Effective search space: 189960496752 Effective search space used: 189960496752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)