BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0568.0002.p (676 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K784.1 B3K784_9BACI DNA ligase, NAD-dependent EC=6.5.1.2 1073 0.0 B1DE65.1 B1DE65_9BACL DNA ligase, NAD-dependent EC=6.5.1.2 927 0.0 A6TLU4.1 DNLJ_ALKMQ DNA ligase EC=6.5.1.2 687 0.0 A8MLJ8.1 DNLJ_ALKOO DNA ligase EC=6.5.1.2 673 0.0 C1I9U6.1 C1I9U6_9CLOT NAD-dependent DNA ligase LigA 642 0.0 >B3K784.1 B3K784_9BACI DNA ligase, NAD-dependent EC=6.5.1.2 Length = 670 Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/657 (77%), Positives = 565/657 (85%) Query: 7 MDVMHTIEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQRV 66 MD +E+L+AELN YNYHYYTLD P VSDKEYD LYD+LVALEAE+G+ LP SPTQRV Sbjct: 1 MDFKEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAETGVTLPDSPTQRV 60 Query: 67 GGELLKGFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYAVE 126 GGE+LKGF PHRHLAPLWSLDKAQNIEQLR+WH RV++LVNDYN+KNP NPLP PCYA+E Sbjct: 61 GGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYALE 120 Query: 127 LKFDGLTLNLTYRDGTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGVIEVQGEGI 186 LKFDGLTLNLTY+DG LVQA+TRGNG GEGILAQVKTIKSVP+TIP+ EG IEVQGEGI Sbjct: 121 LKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVPMTIPYAEGTIEVQGEGI 180 Query: 187 MNLSVLADYNTRAAEPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFSDHQ 246 MNLSVL YN AAEPLK PK TAER+LNA+FYN+GY++G+ F+DH+ Sbjct: 181 MNLSVLEQYNQTAAEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGYSDGITFADHK 240 Query: 247 EMMDFLRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREVL 306 EMMDFLR NR KVNPY+ YF++FDDV EQLA+IE+ RS LDYLIDGAV+KVTDFRIREVL Sbjct: 241 EMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDFRIREVL 300 Query: 307 GYTDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN 366 GYTDKFPRWAVAYKFEAEETTTVL+SV+WNVGRTGK+TPLARVE VELAGVTVQNCTLNN Sbjct: 301 GYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQNCTLNN 360 Query: 367 VGDIERKNLKHALGTRVFIRRSNDVIPEILGKVTEESDGGEIIFPVDCPACGFPLEMRGA 426 +GDIERKNLK ALG+RVFIRRSNDVIPEILGKVTEE DG EI++P CP+CGFPLE RGA Sbjct: 361 IGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQDGEEILYPEQCPSCGFPLEQRGA 420 Query: 427 HLFCNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFEQL 486 HLFCNNK CKPQI+ RITHFASRDAMDIETFSDKTA QLY+EL VREPADLY L+F+ L Sbjct: 421 HLFCNNKTGCKPQIVARITHFASRDAMDIETFSDKTAIQLYDELGVREPADLYTLSFDSL 480 Query: 487 VKLERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMKAT 546 +KLERFGEKKA NLL A+E+SK RDLASFL+ALGIPNTGK+TT+MLADHYR L VM AT Sbjct: 481 LKLERFGEKKAQNLLDAIEKSKERDLASFLFALGIPNTGKSTTKMLADHYRDLNRVMAAT 540 Query: 547 AEELSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFFSGKT 606 AEEL LPD+GGIVAESI +FADPF SI +ML LGV+AKAPEAP+ VSTDS+FSGKT Sbjct: 541 AEELVELPDVGGIVAESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKT 600 Query: 607 VVLTGSLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQV 663 VVLTG+L LT KV+GSVSKKTDL+IAGEKAGSKLAKAQQLGI + Sbjct: 601 VVLTGTLHLLTREEATERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDI 657 >B1DE65.1 B1DE65_9BACL DNA ligase, NAD-dependent EC=6.5.1.2 Length = 677 Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/652 (69%), Positives = 522/652 (80%), Gaps = 3/652 (0%) Query: 13 IEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQRVGGELLK 72 ++EL AE++ +NY YYTLD P ++D +YD LYD+LVALEA++G++LP SPTQRVGGELLK Sbjct: 14 MQELAAEISAHNYSYYTLDQPTINDADYDKLYDELVALEADTGVVLPDSPTQRVGGELLK 73 Query: 73 GFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPEN-PLPEPCYAVELKFDG 131 GF PHRH A LWSLDKAQ+ E L +W+ RVLK +NDYN+K+PE PLP+P Y +ELKFDG Sbjct: 74 GFEPHRHRARLWSLDKAQDTEDLLAWNQRVLKAINDYNAKHPEEEPLPQPNYVIELKFDG 133 Query: 132 LTLNLTYRDGTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGVIEVQGEGIMNLSV 191 LTLNLTY +G L+QA+TRGNG GEGILAQVKTI+SVPLTIPF +G+IEVQGEGIMNLSV Sbjct: 134 LTLNLTYENGQLIQASTRGNGTVGEGILAQVKTIRSVPLTIPFGDGIIEVQGEGIMNLSV 193 Query: 192 LADYNTRAAEPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFSDHQEMMDF 251 L YN AAEPLK PKTTAER+LNAFFYN+G+AEGV FS+H+EM F Sbjct: 194 LERYNQTAAEPLKNARNAAAGALRNLNPKTTAERKLNAFFYNVGFAEGVSFSNHREMQQF 253 Query: 252 LRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREVLGYTDK 311 L+ N FKVNPY Y + ++V E+L I E R LD+LIDGAV+K+TD R RE LGYTDK Sbjct: 254 LKDNLFKVNPYALYLNSIEEVQEELLRIAEKRLELDFLIDGAVVKLTDMRTREALGYTDK 313 Query: 312 FPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNNVGDIE 371 FPRWAVA+KFEAEE TVLESVSW VGRTGK+TP+ARVEAVELAGVTVQNCTLNN+GDIE Sbjct: 314 FPRWAVAFKFEAEEAATVLESVSWEVGRTGKITPVARVEAVELAGVTVQNCTLNNIGDIE 373 Query: 372 RKNLKHALGTRVFIRRSNDVIPEILGKVTEESDGGEIIFPVDCPACGFPLEMRGAHLFCN 431 RKNLKHALGT V IRRSNDVIPEILGKV EE G EI+FP CPACG LE RGAHLFCN Sbjct: 374 RKNLKHALGTLVSIRRSNDVIPEILGKVDEEP-GQEIVFPAVCPACGTELEQRGAHLFCN 432 Query: 432 NKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFEQLVKLER 491 NKL C+PQIIGRITHF+SRDAMDIE FS TA QLY + V +PADLY L ++ L+KL+R Sbjct: 433 NKLGCRPQIIGRITHFSSRDAMDIEAFSVMTAEQLYADCDVHDPADLYALGYDDLIKLDR 492 Query: 492 FGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMKATAEELS 551 FG+KKA LL A+E+SK RDLA+FL+ALGIPNTGKATT+MLADHY SL+GVM ATAEEL Sbjct: 493 FGDKKARKLLDAIEKSKDRDLAAFLFALGIPNTGKATTKMLADHYGSLDGVMSATAEELV 552 Query: 552 GLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFFSGKTVVLTG 611 GL D+G IVA+SIV++FADP + SI RM E GV+A+A E P V DS FSGKTVVLTG Sbjct: 553 GLQDVGAIVADSIVNYFADPIIAASIARMREHGVKAEA-EQPVVVRQDSIFSGKTVVLTG 611 Query: 612 SLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQV 663 +L K++ KVSGSVSKKTD VIAGE AGSKL KA+ LGI V Sbjct: 612 TLSKMSRDEAAKKLEAFGAKVSGSVSKKTDFVIAGESAGSKLTKARDLGITV 663 >A6TLU4.1 DNLJ_ALKMQ DNA ligase EC=6.5.1.2 Length = 660 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/654 (53%), Positives = 447/654 (68%), Gaps = 16/654 (2%) Query: 7 MDVMHTIEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQRV 66 MD M +E+LV +LN+Y+Y YY LD P VSDKEYD LYD+L+ LE ++G +L SPTQRV Sbjct: 1 MDQMKEMEQLVKQLNEYSYKYYVLDQPIVSDKEYDSLYDQLIELEEKTGHVLLDSPTQRV 60 Query: 67 GGELLKGFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYAVE 126 GGE LK F H+H+A LWSLDKA+ E+L +W R+ K + + E Y VE Sbjct: 61 GGEPLKKFQSHQHVALLWSLDKAKTAEELVAWEQRIKKKLESNH---------EIEYIVE 111 Query: 127 LKFDGLTLNLTYRDGTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGVIEVQGEGI 186 KFDGLTLNLTY +G LVQAATRGNGV GE I+ QVKTI+++PL + F +E+QGEG+ Sbjct: 112 YKFDGLTLNLTYENGELVQAATRGNGVVGESIIEQVKTIQAIPLGVDFNNK-MEIQGEGL 170 Query: 187 MNLSVLADYNTRAAEPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFSDHQ 246 M +S LA YN A EPLK PK TA+R+L AF Y+IGY EG++F H Sbjct: 171 MAISTLAQYNKTAKEPLKNPRNAAAGALRNLDPKVTAKRKLGAFCYSIGYYEGMEFETHI 230 Query: 247 EMMDFLRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREVL 306 +M+DFL+ NRF V+ Y+ D V EQ+ E+E LDYL DG VIKV D R RE+L Sbjct: 231 QMIDFLKKNRFPVSNYIKSCKGIDQVIEQIREVEAGMKELDYLTDGIVIKVNDLRTREIL 290 Query: 307 GYTDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN 366 GYT KFPRWA+AYKFEA+E TT LE+V W VGRTGK+TP A++E VE+AGVTV TLNN Sbjct: 291 GYTQKFPRWAIAYKFEAQEVTTKLEAVLWQVGRTGKLTPAAQLEPVEIAGVTVSRATLNN 350 Query: 367 VGDIERKNLKHALGTRVFIRRSNDVIPEILGKVTEESDGG-EIIFPVDCPACGFPLEMRG 425 DI+RK +K +G +V++RRS DVIPEI+G + E + EI P CPAC + RG Sbjct: 351 WEDIQRKKVK--VGCQVWLRRSGDVIPEIMGAIEETCEEAVEIEKPQHCPACDSEIVHRG 408 Query: 426 AHLFCNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFEQ 485 H+FC N L+CKPQ++ RI H+ASRDAMDIE FS+KTA QL+E L ++ A LYEL +E Sbjct: 409 VHIFCPNSLSCKPQLVSRIVHYASRDAMDIEGFSEKTAEQLFEALGLKNIAALYELKYED 468 Query: 486 LVKLERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMKA 545 L++LERFG+KKA NLL A+EESK L +F+YALGIPN G+ T LA+++ LE + +A Sbjct: 469 LIQLERFGDKKAKNLLDAIEESKTCKLDAFIYALGIPNVGRKTAADLANYFGDLEKIQRA 528 Query: 546 TAEELSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFFSGK 605 +EL LPDIGGIVA+SIV FF D ++ SI +L G++ + RQ +S FSGK Sbjct: 529 NYDELVVLPDIGGIVAQSIVGFFEDEKIIKSIELLLAEGIKPQHKMKNRQ---ESIFSGK 585 Query: 606 TVVLTGSLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQL 659 TVV+TG+L+ KVSGS+SK TD VIAG+ AGSKL KAQ++ Sbjct: 586 TVVVTGTLENYGRKEIQTLLEEQGAKVSGSISKNTDFVIAGDNAGSKLKKAQEI 639 >A8MLJ8.1 DNLJ_ALKOO DNA ligase EC=6.5.1.2 Length = 661 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/654 (53%), Positives = 441/654 (67%), Gaps = 15/654 (2%) Query: 7 MDVMHTIEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQRV 66 M M + +LV LN+Y+Y YY LD P VSDKEYD LYD+LV LE E +L SPT RV Sbjct: 1 MGSMERLRQLVDILNEYSYQYYVLDEPVVSDKEYDQLYDELVLLEKELNTVLEDSPTIRV 60 Query: 67 GGELLKGFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYAVE 126 GG++LK F H HLAPLWSLDK + E+L SW RV +L+ P+ Y +E Sbjct: 61 GGDVLKNFKAHNHLAPLWSLDKCKTPEELISWDLRVRRLLEGSGV-----PIE---YVME 112 Query: 127 LKFDGLTLNLTYRDGTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGVIEVQGEGI 186 KFDGLTLNLTY +G LVQAATRGNG TGEGIL QVKTIK++PLTIP K G IEVQGEG+ Sbjct: 113 YKFDGLTLNLTYNNGQLVQAATRGNGTTGEGILEQVKTIKTIPLTIPHK-GRIEVQGEGL 171 Query: 187 MNLSVLADYNTRAAEPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFSDHQ 246 M LSVLA YN A EPLK PK TA+R+L+AF YN+G+ EG+ F+ H Sbjct: 172 MGLSVLAAYNKTALEPLKNPRNAAAGALRNLDPKVTAKRKLSAFCYNVGFYEGIDFNTHM 231 Query: 247 EMMDFLRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREVL 306 E++ FL+ N+F V+ Y F V E++ I E LD+L DG VIKV R +L Sbjct: 232 EILAFLKANKFPVSNYTKKFHTIHQVIEEIETIGEQVKSLDFLTDGLVIKVNHMEARRLL 291 Query: 307 GYTDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN 366 GYT KFPRWA+A+KFEAEE TT L+ V W VGRTGK+TP A +E +++ GVTV TLNN Sbjct: 292 GYTQKFPRWAMAFKFEAEEMTTELKDVIWQVGRTGKLTPAAVLEPIDIGGVTVSRATLNN 351 Query: 367 VGDIERKNLKHALGTRVFIRRSNDVIPEILGKVTEESDGG-EIIFPVDCPACGFPLEMRG 425 DI+RK +K +G RV+IRRSNDVIPEI+G + E +G +I P CPAC + RG Sbjct: 352 WEDIQRKKVK--IGCRVWIRRSNDVIPEIMGSIEETLEGAMDIEKPQHCPACHSEVVERG 409 Query: 426 AHLFCNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFEQ 485 AH+FC N L+CKPQ++ RI H+ASRDAMDI FS+KTA QL+EEL +R+ ADLYE+ +E Sbjct: 410 AHIFCPNSLSCKPQLVSRIVHYASRDAMDIVGFSEKTAEQLFEELNLRDLADLYEIKYED 469 Query: 486 LVKLERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMKA 545 L+KL RFG+KKA NLL+A+E SK L SF+YALGIPN G+ T LA HY+S + + +A Sbjct: 470 LIKLPRFGDKKARNLLEAIENSKNCKLDSFVYALGIPNVGRKTATDLAKHYKSFQAIQEA 529 Query: 546 TAEELSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFFSGK 605 +EL LPD+G IVA+SI+ FF D + S+NR++ G+ E +Q ++ F GK Sbjct: 530 EFQELITLPDVGDIVAQSIIDFFEDEEIKKSVNRLINEGIRPLFKEVEQQ---ENIFLGK 586 Query: 606 TVVLTGSLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQL 659 TVV+TG+L+K KV+GSVSK TD ++AGE AGSKL KA ++ Sbjct: 587 TVVVTGTLEKYGRKEIKELLEKLGAKVTGSVSKNTDFLLAGEAAGSKLEKAMEI 640 >C1I9U6.1 C1I9U6_9CLOT NAD-dependent DNA ligase LigA Length = 663 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/659 (50%), Positives = 445/659 (67%), Gaps = 10/659 (1%) Query: 7 MDVMHTIEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQRV 66 MD IEELV ELN+Y Y YY+LD P VSDK+YD YD+L LE E+ +LP+SPT RV Sbjct: 1 MDKKQRIEELVNELNRYAYEYYSLDNPSVSDKDYDKKYDELKKLEEETNYVLPYSPTLRV 60 Query: 67 GGELLKGFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYAVE 126 G +L+GF + H A LWSLDKAQ++E+L+ WH R LK + + NS+ + LPEP Y + Sbjct: 61 GDRVLEGFNKYTHKARLWSLDKAQSLEELKDWHNRNLKFIREMNSRGED--LPEPRYVLT 118 Query: 127 LKFDGLTLNLTY-RDGTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGVIEVQGEG 185 KFDGLT+NLTY +G L AATRGNG GE + AQVKTIKS+PL I + + E+ GE Sbjct: 119 KKFDGLTVNLTYDENGILASAATRGNGEVGEEVSAQVKTIKSIPLKIN-NDDLFEIHGEA 177 Query: 186 IMNLSVLADYNTRAAEPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFSDH 245 IM +YN A PLK K TA+R L+AFFY++GY EG F + Sbjct: 178 IMTTEAFENYNKNADVPLKNLRNGAAGALRNLNLKETAKRNLSAFFYDVGYKEGEGFKTY 237 Query: 246 QEMMDFLRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREV 305 +EM++F++ ++ Y+ Y +++ +++ I E R L+Y IDG VI + D R RE+ Sbjct: 238 EEMLNFIKDKGLPMDDYIRYCTTIEEIEKEIDYIREIRFDLNYDIDGVVIAIDDIRTREL 297 Query: 306 LGYTDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLN 365 +GYT KFP+WA+AYKFEA+E TT L V WNVGR+G+V P A ++ ++LAGVTV+ TLN Sbjct: 298 MGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRVGPTAILDPIDLAGVTVKRATLN 357 Query: 366 NVGDIERKNLKHALGTRVFIRRSNDVIPEILGKVTEESDGGE-IIFPVDCPACGFPLEMR 424 N+ DI RK ++ +G VF+RRSNDVIPEI+G VTE +G E I P CPACG L Sbjct: 358 NIDDIRRKGVR--IGAEVFVRRSNDVIPEIMGVVTESLEGTEEINVPEVCPACGAHLVQN 415 Query: 425 GAHLFCNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFE 484 G H FC N L+CKPQ++ I H+ASRDAM+IE FS+KTA QL+E+L ++ ADLY+L E Sbjct: 416 GVHYFCENTLSCKPQMVKTIVHYASRDAMNIEGFSEKTAEQLFEKLDIKSIADLYKLQKE 475 Query: 485 QLVKLERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMK 544 +L++L++FG KKA NLL A+E+SK +L F+Y+LGIPN G T + L + ++SLEG+ Sbjct: 476 ELLQLDKFGPKKAQNLLDAVEKSKDCELYRFIYSLGIPNVGVKTAKDLVNKFKSLEGLKS 535 Query: 545 ATAEELSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFFSG 604 A+ ++L + D+GGIVA+ ++ FF + V +IN +LELGV K E +Q+ + S F G Sbjct: 536 ASFDDLVSVQDVGGIVAKCVLEFFKEEKAVNTINELLELGVNPKFEE--KQIIS-SPFEG 592 Query: 605 KTVVLTGSLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQV 663 KTVV+TG+LQ + KVSGSVSKKTD VIAGE+AGSKL KA +LG++V Sbjct: 593 KTVVVTGTLQNYSRGEIKAKLELLGAKVSGSVSKKTDFVIAGEEAGSKLDKAIELGVKV 651 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,650,033,411 Number of extensions: 150660000 Number of successful extensions: 451736 Number of sequences better than 1.0e-05: 1651 Number of HSP's gapped: 441292 Number of HSP's successfully gapped: 1837 Length of query: 676 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 533 Effective length of database: 1,713,491,058 Effective search space: 913290733914 Effective search space used: 913290733914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)