BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0053.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q894V2.1 Q894V2_CLOTE Transcriptional regulatory protein 453 e-125 A9KR86.1 A9KR86_CLOPH Transcriptional regulator, AraC family 434 e-120 Q24X49.1 Q24X49_DESHY Putative uncharacterized protein 419 e-115 A7FRL3.1 A7FRL3_CLOB1 Transcriptional regulator, AraC family 414 e-114 A5HZE6.1 A5HZE6_CLOBH Transcriptional regulator, AraC family 414 e-114 >Q894V2.1 Q894V2_CLOTE Transcriptional regulatory protein Length = 295 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 210/295 (71%), Positives = 247/295 (83%), Gaps = 2/295 (0%) Query: 1 LNYSKDIERCVEYIEVNIKRNLTAEEIAAEAGYSLYHFSRVFSLCKGMSVMEYVRSRKLS 60 +NY KDIE+C+++IE +IK N+T +EIA E+GYSLYHF RVFSLCKGMS+MEY+R R+LS Sbjct: 1 MNYRKDIEKCIKFIEDHIKENITIKEIANESGYSLYHFCRVFSLCKGMSLMEYIRDRRLS 60 Query: 61 LAAVELFSGKRIIDIALDYGFETQSGFTKAFRKAFGYSPSQYAARMEGFLQMGSKIDIGG 120 LAA EL G+++IDIALDYGFET SGFTKAFRK FGYSP+QY ARM G+ IGG Sbjct: 61 LAATELLKGRKVIDIALDYGFETPSGFTKAFRKIFGYSPTQYMARMAGYADTKKAFKIGG 120 Query: 121 YMMNPVIVQKPAFKVAGYGIETNVAEGNYTKDIASFWSHYEGENLESKMYDILNPPKHGX 180 Y+MNPVI+ +PAFKVAGYGI+TN+ +G YTKDIASFWS+Y GENLESKMY ILNPPKHG Sbjct: 121 YIMNPVIINRPAFKVAGYGIKTNITDGTYTKDIASFWSNYNGENLESKMYKILNPPKHG- 179 Query: 181 XXXGLCVPAFDSGNAVYLLGVIVEDFSRVTDEMITVDVPEAEYAVFTTPPVDTSEGKDQE 240 GLCVP + GNA+YLLGVIV+DFS+V + M+TV+VP AEYAVFTT PVDT+ K+Q+ Sbjct: 180 -EVGLCVPLSEDGNAIYLLGVIVDDFSKVEENMLTVEVPAAEYAVFTTTPVDTTNDKEQK 238 Query: 241 EFVQTIKSTWKYIFEEWFPGSGYVYDEGKLNFEFYDERCHSRVDTVMEIYVPVKK 295 EF + IK TWKYIFE+WF SGYVYDE KL+FEFYDERCH R DTVMEIYVPVKK Sbjct: 239 EFAKIIKGTWKYIFEDWFKDSGYVYDENKLDFEFYDERCHYRQDTVMEIYVPVKK 293 >A9KR86.1 A9KR86_CLOPH Transcriptional regulator, AraC family Length = 298 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 201/294 (68%), Positives = 244/294 (82%), Gaps = 2/294 (0%) Query: 1 LNYSKDIERCVEYIEVNIKRNLTAEEIAAEAGYSLYHFSRVFSLCKGMSVMEYVRSRKLS 60 LNY +DIE CVEYIE +IK N+T EE+A++ GYSLYHFSRVFSLCKG+SVMEY+R+R+LS Sbjct: 5 LNYREDIETCVEYIEEHIKENITMEEVASQIGYSLYHFSRVFSLCKGISVMEYIRNRRLS 64 Query: 61 LAAVELFSGKRIIDIALDYGFETQSGFTKAFRKAFGYSPSQYAARMEGFLQMGSKIDIGG 120 LAA +LF G++IIDIA DY FET SGF +FR AFGYSP+Q+ RM G+ + + ++IGG Sbjct: 65 LAATQLFQGRKIIDIAFDYEFETPSGFANSFRNAFGYSPTQFMKRMAGYAETKTTVEIGG 124 Query: 121 YMMNPVIVQKPAFKVAGYGIETNVAEGNYTKDIASFWSHYEGENLESKMYDILNPPKHGX 180 Y+MNP IV++P F VAGYGI+TN+ YTKD+ASFWS+Y+GENLESKMY ILNP KHG Sbjct: 125 YIMNPAIVKRPEFMVAGYGIKTNITGDAYTKDVASFWSNYDGENLESKMYKILNPKKHG- 183 Query: 181 XXXGLCVPAFDSGNAVYLLGVIVEDFSRVTDEMITVDVPEAEYAVFTTPPVDTSEGKDQE 240 GLCVP + GNA+YLLGVIVEDFS+V ++M+TV VPEA YAVFTTPPVDT++ +Q+ Sbjct: 184 -EVGLCVPLSEDGNAIYLLGVIVEDFSKVEEDMLTVVVPEAVYAVFTTPPVDTTKDMEQK 242 Query: 241 EFVQTIKSTWKYIFEEWFPGSGYVYDEGKLNFEFYDERCHSRVDTVMEIYVPVK 294 EF + I STWKYIFEEWF SGYVYDE KL+FE+YDERCH R DTVM+IYVPVK Sbjct: 243 EFAKIIASTWKYIFEEWFKDSGYVYDESKLDFEYYDERCHHRQDTVMDIYVPVK 296 >Q24X49.1 Q24X49_DESHY Putative uncharacterized protein Length = 296 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 191/294 (64%), Positives = 241/294 (81%), Gaps = 2/294 (0%) Query: 1 LNYSKDIERCVEYIEVNIKRNLTAEEIAAEAGYSLYHFSRVFSLCKGMSVMEYVRSRKLS 60 +NY K+IE+C+E+IE +IK ++T EEIA ++GYSLYHF RVFSLCKG+SVMEY+R R+L+ Sbjct: 1 MNYRKEIEKCIEFIEDHIKEDITIEEIANQSGYSLYHFCRVFSLCKGISVMEYIRGRRLA 60 Query: 61 LAAVELFSGKRIIDIALDYGFETQSGFTKAFRKAFGYSPSQYAARMEGFLQMGSKIDIGG 120 LAA ELF G++I+DIA DYGFET SGF KAFRKA+GYSP+QY RM + + +IG Sbjct: 61 LAATELFKGRKILDIAFDYGFETPSGFAKAFRKAYGYSPTQYMMRMPQYADTKTTFEIGA 120 Query: 121 YMMNPVIVQKPAFKVAGYGIETNVAEGNYTKDIASFWSHYEGENLESKMYDILNPPKHGX 180 Y+M PV+V++PAFKVAGYGI+TN+ YTKDIAS+WS+YEG+NLESKMY ILNP +HG Sbjct: 121 YIMKPVMVKRPAFKVAGYGIKTNITGVTYTKDIASYWSNYEGKNLESKMYKILNPAEHG- 179 Query: 181 XXXGLCVPAFDSGNAVYLLGVIVEDFSRVTDEMITVDVPEAEYAVFTTPPVDTSEGKDQE 240 GLCVP + GN +YLLGVIV+DFS+V ++M+TV+VPEAEYAVFTT PVDTS K Q Sbjct: 180 -EVGLCVPLSEDGNVIYLLGVIVDDFSKVEEDMLTVEVPEAEYAVFTTVPVDTSNDKKQI 238 Query: 241 EFVQTIKSTWKYIFEEWFPGSGYVYDEGKLNFEFYDERCHSRVDTVMEIYVPVK 294 EF + I TWKYIFE+WF GS Y+YD+ K++FEFYDERCH R DTVM+IY+P++ Sbjct: 239 EFAEIIARTWKYIFEDWFKGSEYIYDKSKIDFEFYDERCHHRKDTVMDIYIPIR 292 >A7FRL3.1 A7FRL3_CLOB1 Transcriptional regulator, AraC family Length = 295 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/297 (65%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 1 LNYSKDIERCVEYIEVNIKRNLTAEEIAAEAGYSLYHFSRVFSLCKGMSVMEYVRSRKLS 60 +NYS I C+E+IE NIK +LT E IA + GYS++HFSR+F++ KG+++MEYV+ R+LS Sbjct: 1 MNYSNAISECIEFIEENIKSDLTPEVIANKCGYSVFHFSRIFNINKGITLMEYVKKRRLS 60 Query: 61 LAAVELFSGKRIIDIALDYGFETQSGFTKAFRKAFGYSPSQYAARMEGFLQMGSKIDIGG 120 LAA++LF G RIIDIALDYGFET +GF+KAF+K FG+SP QY M + ID GG Sbjct: 61 LAAIDLFKGGRIIDIALDYGFETHNGFSKAFKKEFGFSPKQYVKCMGNYFNEELNIDFGG 120 Query: 121 YMMNPVIVQKPAFKVAGYGIETNVAEGNYTKDIASFWSHYEGENLESKMYDILNPPKHGX 180 Y+MNPVI++K AFKVAGYGI+TN+ NYTKDIASFWS+Y GENLESKMY ILNPPKHG Sbjct: 121 YIMNPVIIKKSAFKVAGYGIKTNITNSNYTKDIASFWSNYNGENLESKMYKILNPPKHG- 179 Query: 181 XXXGLCVPAF-DSGNAVYLLGVIVEDFSRVTDEMITVDVPEAEYAVFTTPPVDTSEGKDQ 239 GLCVPA +SG+AVYLLGVIV++F VT+EMITV+VPEA YAVFT PPVDTS D Sbjct: 180 -EVGLCVPANGESGDAVYLLGVIVDNFDNVTNEMITVEVPEATYAVFTIPPVDTSNDLDN 238 Query: 240 EEFVQTIKSTWKYIFEEWFPGSGYVYDEGKLNFEFYDERCHSRVDTVMEIYVPVKKR 296 ++F + IK TWKYIFEEWF S YV+DE K +FEFYDERCH R DTVMEIYVP++K+ Sbjct: 239 DDFPEAIKKTWKYIFEEWFKDSEYVFDESKFDFEFYDERCHGRKDTVMEIYVPIEKK 295 >A5HZE6.1 A5HZE6_CLOBH Transcriptional regulator, AraC family Length = 295 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/297 (65%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 1 LNYSKDIERCVEYIEVNIKRNLTAEEIAAEAGYSLYHFSRVFSLCKGMSVMEYVRSRKLS 60 +NYS I C+E+IE NIK +LT E IA + GYS++HFSR+F++ KG+++MEYV+ R+LS Sbjct: 1 MNYSNAISECIEFIEENIKSDLTPEVIANKCGYSVFHFSRIFNINKGITLMEYVKKRRLS 60 Query: 61 LAAVELFSGKRIIDIALDYGFETQSGFTKAFRKAFGYSPSQYAARMEGFLQMGSKIDIGG 120 LAA++LF G RIIDIALDYGFET +GF+KAF+K FG+SP QY M + ID GG Sbjct: 61 LAAIDLFKGGRIIDIALDYGFETHNGFSKAFKKEFGFSPKQYVKCMGNYFNEELNIDFGG 120 Query: 121 YMMNPVIVQKPAFKVAGYGIETNVAEGNYTKDIASFWSHYEGENLESKMYDILNPPKHGX 180 Y+MNPVI++K AFKVAGYGI+TN+ NYTKDIASFWS+Y GENLESKMY ILNPPKHG Sbjct: 121 YIMNPVIIKKSAFKVAGYGIKTNITNSNYTKDIASFWSNYNGENLESKMYKILNPPKHG- 179 Query: 181 XXXGLCVPAF-DSGNAVYLLGVIVEDFSRVTDEMITVDVPEAEYAVFTTPPVDTSEGKDQ 239 GLCVPA +SG+AVYLLGVIV++F VT+EMITV+VPEA YAVFT PPVDTS D Sbjct: 180 -EVGLCVPANGESGDAVYLLGVIVDNFDNVTNEMITVEVPEATYAVFTIPPVDTSNDLDN 238 Query: 240 EEFVQTIKSTWKYIFEEWFPGSGYVYDEGKLNFEFYDERCHSRVDTVMEIYVPVKKR 296 ++F + IK TWKYIFEEWF S YV+DE K +FEFYDERCH R DTVMEIYVP++K+ Sbjct: 239 DDFPEAIKKTWKYIFEEWFKDSEYVFDESKFDFEFYDERCHGRKDTVMEIYVPIEKK 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,801,678,258 Number of extensions: 73664396 Number of successful extensions: 184868 Number of sequences better than 1.0e-05: 2277 Number of HSP's gapped: 187007 Number of HSP's successfully gapped: 2277 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)