BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0051.p (464 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB99.1 B3KB99_9BACI SpoVR family protein 730 0.0 B1DDD6.1 B1DDD6_9BACL SpoVR family protein 704 0.0 B7GEX1.1 B7GEX1_ANOFW Stage V sporulation protein R required for... 645 0.0 C5D605.1 C5D605_9BACI SpoVR family protein 645 0.0 C0Z7A3.1 C0Z7A3_BREBN Stage V sporulation protein R 642 0.0 >B3KB99.1 B3KB99_9BACI SpoVR family protein Length = 463 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/464 (72%), Positives = 400/464 (86%), Gaps = 1/464 (0%) Query: 1 MPGDEIQALERAIAEITEIASGFGLDFYPMRYEICPADIIYTFGAYGMPTRFGHWSFGKN 60 M DEI LER+IAEITEIA+GFGLDFYPMRYEICPADIIYTFGAYGMPTRF HWSFGK Sbjct: 1 MHQDEIAELERSIAEITEIATGFGLDFYPMRYEICPADIIYTFGAYGMPTRFSHWSFGKT 60 Query: 61 FHRMKSQYDFGLSKIYELVINSNPCYAFLLDGNSLVQNKLIVAHVLAHCDFFKNNMRFSM 120 F++MK QYDFGLSKIYELVINSNPCYAFLLDGNSL+QNKLIVAHVLAHCDFFKNN RFS+ Sbjct: 61 FNKMKMQYDFGLSKIYELVINSNPCYAFLLDGNSLIQNKLIVAHVLAHCDFFKNNTRFSV 120 Query: 121 SNRDMVESMSATADRIADYSVTYGIDTVESFIDSVLAVQEHIDPSLIQPRKLGKTHLLEA 180 SNR+MVESMSATA+RI+ Y + +G + VE FID+VLA+QEH+DP +++P KL K Sbjct: 121 SNRNMVESMSATAERISRYEIEHGTEAVEQFIDAVLAIQEHVDPHIVRPDKLDKQRYTAR 180 Query: 181 KMKERKDAPPGGSSPANPYEELWDLENSKTAGPEPETAGKRKFPPEPEKDMVWFIQQYST 240 +M+E+K+ P Y++LW+++ + A ++FPPEPEKD++WFIQ++S Sbjct: 181 RMQEQKEEAKRQKPPGR-YDDLWEMDEDGDKQTDKSPAATKRFPPEPEKDIMWFIQEHSD 239 Query: 241 ALEDWQRDIMTMLRDEMLYFWPQMETKIMNEGWASYWHQRIMRELDLTPEETVEYAKLNS 300 LEDWQRDIM+MLR+EMLYFWPQMETKIMNEGWASYWHQRI+RE+DLT EETVE+AKLN+ Sbjct: 240 ILEDWQRDIMSMLREEMLYFWPQMETKIMNEGWASYWHQRILREMDLTSEETVEFAKLNA 299 Query: 301 SVVQPSRQSLNPYYLGLKIFEDIERRWDRDKMFEVRELDSDISFIRSYLSKQLVNDLDLY 360 SVVQPSR SLNPYYLGLKIFEDIERRWDR+KMF+VRE DSDISF+R+YL+K+LV DLDLY Sbjct: 300 SVVQPSRHSLNPYYLGLKIFEDIERRWDREKMFDVREYDSDISFLRNYLTKELVEDLDLY 359 Query: 361 VFEKKGPEWKITDKAWENVRDQLVLARVNGGSPYLVVQDADYERNGELLIVHRYESIELD 420 VFEKKGPEWKITDKAWEN+RDQLV++RVNGGSP+LVV D D+ R+GEL+I H YE IELD Sbjct: 360 VFEKKGPEWKITDKAWENIRDQLVVSRVNGGSPFLVVTDGDHLRSGELMIKHLYEGIELD 419 Query: 421 LKYLERTLPHIYALWGRTVHLQTVVEDKKALFTYDGKKVQRRFM 464 LKY+ERT+P++Y LWG+ VHL +++E K LF+YDGKK+ RRF+ Sbjct: 420 LKYMERTIPYVYRLWGKPVHLHSIIEGKPILFSYDGKKLHRRFI 463 >B1DDD6.1 B1DDD6_9BACL SpoVR family protein Length = 476 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/481 (69%), Positives = 394/481 (81%), Gaps = 22/481 (4%) Query: 1 MPGDEIQALERAIAEITEIASGFGLDFYPMRYEICPADIIYTFGAYGMPTRFGHWSFGKN 60 MP +++ALE AIAEITEIA+GFGLDFYPMRYEICP+DIIYTFGAYGMPTRF HWSFGK Sbjct: 1 MPSTDMKALEYAIAEITEIATGFGLDFYPMRYEICPSDIIYTFGAYGMPTRFSHWSFGKT 60 Query: 61 FHRMKSQYDFGLSKIYELVINSNPCYAFLLDGNSLVQNKLIVAHVLAHCDFFKNNMRFSM 120 F++MK QYDFGLSKIYELVINSNPCYAFLLD NSLVQNKLIVAHVLAHCDFFKNN RFS Sbjct: 61 FNKMKMQYDFGLSKIYELVINSNPCYAFLLDSNSLVQNKLIVAHVLAHCDFFKNNARFSK 120 Query: 121 SNRDMVESMSATADRIADYSVTYGIDTVESFIDSVLAVQEHIDPSLIQPRKLGKTHLLEA 180 +NR+MVESM+ATA+RI +Y +T+G VE FID+VLA+QEH+DPS+++P ++ K + + Sbjct: 121 TNRNMVESMTATAERIREYEMTHGALAVEQFIDAVLAIQEHVDPSIVKPYRMSKDAYISS 180 Query: 181 KMKERKDAPPGGSSPANPYEELWDLENSKTAGPEPETAGKRKFPPEPEKDMVWFIQQYST 240 K A P S +PY++LW LE + + +T FPP+PEKD++WFI++YS Sbjct: 181 MQKRSPAAKPAPLS--SPYDDLWSLEKEDS---QEKTEPSVSFPPQPEKDILWFIEEYSA 235 Query: 241 ALEDWQRDIMTMLRDEMLYFWPQMETKIMNEGWASYWHQRIMRELDLTPEETVEYAKLNS 300 LE WQRDI+TMLRDEMLYFW Q+ETKIMNEGWAS++HQRIMRELDLT EETVEYA LNS Sbjct: 236 VLEPWQRDILTMLRDEMLYFWAQIETKIMNEGWASFFHQRIMRELDLTSEETVEYAALNS 295 Query: 301 SVVQPSRQSLNPYYLGLKIFEDIERRWD-----------------RDKMFEVRELDSDIS 343 SVVQPSR SLNPYYLGLKIFEDIERRWD R+KMFEVRE D+DIS Sbjct: 296 SVVQPSRHSLNPYYLGLKIFEDIERRWDNPTPEERERFGRVPGRGREKMFEVRENDADIS 355 Query: 344 FIRSYLSKQLVNDLDLYVFEKKGPEWKITDKAWENVRDQLVLARVNGGSPYLVVQDADYE 403 FIR+YL+K LV DLDLYVFEKKGPEWKITDK+WEN+RDQL ARVNGG PYLVV++ DY Sbjct: 356 FIRNYLTKDLVKDLDLYVFEKKGPEWKITDKSWENIRDQLAYARVNGGFPYLVVKNGDYL 415 Query: 404 RNGELLIVHRYESIELDLKYLERTLPHIYALWGRTVHLQTVVEDKKALFTYDGKKVQRRF 463 NGEL + H++E +ELDLKY+ERTLP++Y LWG+TV+L+TVVEDK LF YDGKKV R+F Sbjct: 416 NNGELYLFHQFEGVELDLKYVERTLPYVYQLWGKTVYLETVVEDKALLFMYDGKKVSRKF 475 Query: 464 M 464 + Sbjct: 476 L 476 >B7GEX1.1 B7GEX1_ANOFW Stage V sporulation protein R required for dehydratation of the spore core and assembly of the coat Length = 472 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/481 (64%), Positives = 381/481 (79%), Gaps = 26/481 (5%) Query: 1 MPGDEIQALERAIAEITEIASGFGLDFYPMRYEICPADIIYTFGAYGMPTRFGHWSFGKN 60 M DE +ALE+AIAEITEIA GFGLDFY MRYEICPADIIYTFGAYGMPTRF HWSFGK Sbjct: 1 MKRDEQKALEKAIAEITEIAEGFGLDFYEMRYEICPADIIYTFGAYGMPTRFSHWSFGKQ 60 Query: 61 FHRMKSQYDFGLSKIYELVINSNPCYAFLLDGNSLVQNKLIVAHVLAHCDFFKNNMRFSM 120 FH+MK YD GLSKIYELVINS+PCYAFLL+ N+L+QNKLIVAHVLAH DFFKNN+RFS Sbjct: 61 FHKMKLHYDLGLSKIYELVINSDPCYAFLLNTNTLIQNKLIVAHVLAHSDFFKNNVRFSN 120 Query: 121 SNRDMVESMSATADRIADYSVTYGIDTVESFIDSVLAVQEHIDPSLIQPRKLGKTHLLEA 180 + RDMVESM+ATA+RI Y YG VE F+D+VLA+QEHIDPSL++P KL T L + Sbjct: 121 TKRDMVESMAATAERIKHYEHEYGKQEVEKFLDAVLAIQEHIDPSLLRP-KLAWT-LADT 178 Query: 181 KMKERKDAPPGGSSPANPYEELWDLENSKTAGPEPETAGK-RKFPPEPEKDMVWFIQQYS 239 ++ E D P S PY++LW L+ + P T K RKFPP+PEKD++ FI++YS Sbjct: 179 EVYEEDDEAPKPS----PYDDLWSLDEKRKT---PSTRKKRRKFPPQPEKDLLLFIEEYS 231 Query: 240 TALEDWQRDIMTMLRDEMLYFWPQMETKIMNEGWASYWHQRIMRELDLTPEETVEYAKLN 299 L++WQRDI+TM+R+EMLYFWPQ+ETKIMNEGWA+YWHQRI+RE+DLT +E +E+AKLN Sbjct: 232 RELDEWQRDILTMMREEMLYFWPQLETKIMNEGWATYWHQRILREMDLTSDEAIEFAKLN 291 Query: 300 SSVVQPSRQSLNPYYLGLKIFEDIERRWD----------------RDKMFEVRELDSDIS 343 + VVQPSR +NPYYLGLKIFEDIE+RWD R K+FEVREL+SDIS Sbjct: 292 AGVVQPSRTGINPYYLGLKIFEDIEKRWDNPTEEMKKLGVKPGSGRAKIFEVRELESDIS 351 Query: 344 FIRSYLSKQLVNDLDLYVFEKKGPEWKITDKAWENVRDQLVLARVNGGSPYLVVQDADYE 403 F+R+YL+K+LV D+Y+F+K+G ++KI DK WE+VRDQLV RVNGG PY+ V D DY Sbjct: 352 FLRNYLTKELVMREDMYLFQKQGKDYKIVDKHWEHVRDQLVNMRVNGGFPYITVNDGDYM 411 Query: 404 RNGELLIVHRYESIELDLKYLERTLPHIYALWGRTVHLQTVVEDKKALFTYDGKKVQRRF 463 RNGEL + H YE IELD+KYLE+ LP+IY LWGR VH++T++E+K LFTYDG+ VQR++ Sbjct: 412 RNGELYLKHSYEGIELDVKYLEKVLPYIYQLWGRAVHMETIIENKPTLFTYDGRNVQRKY 471 Query: 464 M 464 + Sbjct: 472 I 472 >C5D605.1 C5D605_9BACI SpoVR family protein Length = 475 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/480 (65%), Positives = 380/480 (79%), Gaps = 23/480 (4%) Query: 1 MPGDEIQALERAIAEITEIASGFGLDFYPMRYEICPADIIYTFGAYGMPTRFGHWSFGKN 60 M D+++ LERAIAEITEIA GFGLDFYPMRYEICPADIIYTFGAYGMPTRF HW+FGK Sbjct: 3 MRQDDLKKLERAIAEITEIAEGFGLDFYPMRYEICPADIIYTFGAYGMPTRFSHWTFGKQ 62 Query: 61 FHRMKSQYDFGLSKIYELVINSNPCYAFLLDGNSLVQNKLIVAHVLAHCDFFKNNMRFSM 120 F++MK QYD GLSKIYELVINS+PCYAFLLD N+L+QNKLIVAHVLAH DFFKNN+RFS Sbjct: 63 FYKMKLQYDLGLSKIYELVINSDPCYAFLLDTNTLIQNKLIVAHVLAHSDFFKNNVRFSN 122 Query: 121 SNRDMVESMSATADRIADYSVTYGIDTVESFIDSVLAVQEHIDPSLIQPRKLGKTHLLEA 180 + RDMVESM+ATA+RI Y YG VE F+D+VLA+QEHIDPSL++P KL T E Sbjct: 123 TKRDMVESMAATAERIKHYEHQYGKFEVEKFLDAVLAIQEHIDPSLLRP-KLSWT--WED 179 Query: 181 KMKERKDAPPGGSSPANPYEELWDLENSKTAGPEPETAGKRKFPPEPEKDMVWFIQQYST 240 ++ PP S+ PY++LW L+ P P +RKFPP+PEKD++ FI++YS Sbjct: 180 TEIYEEEEPPKTST---PYDDLWKLDEKDRPAPPPRKK-RRKFPPQPEKDVLLFIEEYSR 235 Query: 241 ALEDWQRDIMTMLRDEMLYFWPQMETKIMNEGWASYWHQRIMRELDLTPEETVEYAKLNS 300 LEDWQRDI+TM+R+EMLYFWPQ+ETKIMNEGWA+YWHQRI+RE+DLT EE +E+AKLN+ Sbjct: 236 ELEDWQRDILTMMREEMLYFWPQLETKIMNEGWATYWHQRILREMDLTSEEAIEFAKLNA 295 Query: 301 SVVQPSRQSLNPYYLGLKIFEDIERRWD----------------RDKMFEVRELDSDISF 344 +VVQPSR +NPYYLGLKIFEDIE RW+ R K+FEVREL+SDISF Sbjct: 296 NVVQPSRTGINPYYLGLKIFEDIEERWNNPTEEMKKLGVKPGSGRQKIFEVRELESDISF 355 Query: 345 IRSYLSKQLVNDLDLYVFEKKGPEWKITDKAWENVRDQLVLARVNGGSPYLVVQDADYER 404 +R+YL+K+LV D+Y+F+K+G E+KI DK WE++RDQLV RVNGG PY+ V D DY R Sbjct: 356 LRNYLTKELVMREDMYLFQKQGREYKIVDKDWEHIRDQLVSMRVNGGFPYITVNDGDYMR 415 Query: 405 NGELLIVHRYESIELDLKYLERTLPHIYALWGRTVHLQTVVEDKKALFTYDGKKVQRRFM 464 NGEL + H YE IELD+KYLE+ LP+IY LWGR VH++TVVE+K LFTYDGK V R+++ Sbjct: 416 NGELYLKHWYEGIELDIKYLEKVLPYIYQLWGRAVHMETVVEEKPVLFTYDGKTVHRKYI 475 >C0Z7A3.1 C0Z7A3_BREBN Stage V sporulation protein R Length = 473 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/481 (62%), Positives = 378/481 (78%), Gaps = 25/481 (5%) Query: 1 MPGDEIQALERAIAEITEIASGFGLDFYPMRYEICPADIIYTFGAYGMPTRFGHWSFGKN 60 M DE + LER+I EITEIA GF LDFYPMRYEICP+DIIYTFGAYGMPTRF HWSFGK+ Sbjct: 1 MTNDERKELERSIDEITEIAKGFNLDFYPMRYEICPSDIIYTFGAYGMPTRFSHWSFGKS 60 Query: 61 FHRMKSQYDFGLSKIYELVINSNPCYAFLLDGNSLVQNKLIVAHVLAHCDFFKNNMRFSM 120 F+RMK QYD LSKIYELVINSNPCYAFLLDGNSL+QNKLIVAHVLAHCDFFKNN+RFS Sbjct: 61 FYRMKLQYDLNLSKIYELVINSNPCYAFLLDGNSLIQNKLIVAHVLAHCDFFKNNVRFSN 120 Query: 121 SNRDMVESMSATADRIADYSVTYGIDTVESFIDSVLAVQEHIDPSLIQPRKLGKTHLLEA 180 +NRDMVESM+A+ +RI Y + YG + VE+ +D+ LA+QEHIDPSL++P+ K EA Sbjct: 121 TNRDMVESMAASGERIRQYEIEYGKEAVENLLDASLAIQEHIDPSLLRPKLRWKREPEEA 180 Query: 181 KMKERKDAPPGGSSPANPYEELWDLENSKTAGPEPETAGKRKFPPEPEKDMVWFIQQYST 240 K R + +PY++LW L+ EP A RKFPPEPEKD++ FI +YS Sbjct: 181 NKKTRNER-------NSPYDDLWGLDRKAKEEAEPVKA-PRKFPPEPEKDLLLFIMEYSN 232 Query: 241 ALEDWQRDIMTMLRDEMLYFWPQMETKIMNEGWASYWHQRIMRELDLTPEETVEYAKLNS 300 L+DWQRD++T++RDEMLYFWPQMETKIMNEGWA+YWH RI+RE++LT ET+E+AKL+S Sbjct: 233 ILDDWQRDVLTIIRDEMLYFWPQMETKIMNEGWATYWHMRILREMELTESETIEFAKLHS 292 Query: 301 SVVQPSRQSLNPYYLGLKIFEDIERRWD-----------------RDKMFEVRELDSDIS 343 SV+QPS S+NPY+LGLKI EDIE+RWD R K+FEVREL+SDIS Sbjct: 293 SVIQPSTTSINPYHLGLKILEDIEKRWDNPTKEEQERFGRKPGEGRAKIFEVRELESDIS 352 Query: 344 FIRSYLSKQLVNDLDLYVFEKKGPEWKITDKAWENVRDQLVLARVNGGSPYLVVQDADYE 403 FIR++L+K LV+DLDLY+F K+G +W + +K WE VRD L RVNGG PY++V D DY Sbjct: 353 FIRNFLTKDLVSDLDLYMFGKQGNDWVVAEKQWEKVRDGLAGTRVNGGFPYVLVHDGDYL 412 Query: 404 RNGELLIVHRYESIELDLKYLERTLPHIYALWGRTVHLQTVVEDKKALFTYDGKKVQRRF 463 R+GE+ + H +E +ELD+KY+E+TLP+IY LWG+++HL+++VED++ LFTYDGKKV RRF Sbjct: 413 RSGEMYLKHHFEGLELDVKYVEKTLPYIYDLWGKSIHLESMVEDRQVLFTYDGKKVHRRF 472 Query: 464 M 464 + Sbjct: 473 L 473 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,928,058,034 Number of extensions: 128668294 Number of successful extensions: 321486 Number of sequences better than 1.0e-05: 537 Number of HSP's gapped: 319120 Number of HSP's successfully gapped: 561 Length of query: 464 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 325 Effective length of database: 1,751,175,118 Effective search space: 569131913350 Effective search space used: 569131913350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)