BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0049.p (323 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCK2.1 B1DCK2_9BACL Putative uncharacterized protein 368 e-100 C4ILD8.1 C4ILD8_CLOBU Putative uncharacterized protein 335 4e-90 B1QS54.1 B1QS54_CLOBU Putative exopolysaccharide biosynthesis pr... 335 4e-90 B8HFZ1.1 B8HFZ1_ARTCA Putative uncharacterized protein 261 5e-68 B6FL33.1 B6FL33_9CLOT Putative uncharacterized protein 218 4e-55 >B1DCK2.1 B1DCK2_9BACL Putative uncharacterized protein Length = 344 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/246 (70%), Positives = 204/246 (82%) Query: 74 WNYSSDDIQIRIDQVQTGSGPDQITYFVADVVLKDKNSLRAAFADNSFGTNITEDTSEIA 133 WNY D+ I I +V+TGSG D ITY+VADV K +L AFA +SFGTNIT++TS IA Sbjct: 98 WNYKDDNETISIKKVETGSGSDMITYYVADVAFNSKMNLLTAFAKDSFGTNITQNTSTIA 157 Query: 134 SSNNAIFAINGDYYGFRNDGVIIRNGTLYRDDPVRDAMALFKDGTMQTYSEEEVSSSDLL 193 S+NNA+FAINGDYYGFR+DGV+IRNGT+YRD+P R +A+F DGTM++Y EEE S+ DLL Sbjct: 158 SNNNAVFAINGDYYGFRSDGVVIRNGTVYRDEPARIGLAMFNDGTMKSYDEEETSTDDLL 217 Query: 194 AQGAANTLSFGPILIQDGKIASDFSNVKIDTNFGNRSIQNANPRTAVGMIAPNHYVFVVV 253 AQG N SFGP L+ DG+IA DFS+V+ID NFGNRSIQN+NPRT +GMI+ NHYVFVVV Sbjct: 218 AQGVTNAFSFGPALVTDGEIAGDFSHVEIDKNFGNRSIQNSNPRTGIGMISANHYVFVVV 277 Query: 254 DGRSEGYSRGMTLTELANVMSDLGATEAYNLDGGGSSTMYFMGRVVNNPQGKNQERGVSD 313 DGRS GYSRGMTLTE A++ +LGATEAYNLDGGGSSTMYFMGRVVNNP GK ERGVSD Sbjct: 278 DGRSTGYSRGMTLTEFADLFKELGATEAYNLDGGGSSTMYFMGRVVNNPLGKGNERGVSD 337 Query: 314 ILYIKE 319 I+YI + Sbjct: 338 IIYIPQ 343 >C4ILD8.1 C4ILD8_CLOBU Putative uncharacterized protein Length = 302 Score = 335 bits (858), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 158/244 (64%), Positives = 194/244 (79%) Query: 74 WNYSSDDIQIRIDQVQTGSGPDQITYFVADVVLKDKNSLRAAFADNSFGTNITEDTSEIA 133 WNYS ++ I I++ +TG G ++ITY+VA + +KD +S+++AFA N FG NITE TS IA Sbjct: 58 WNYSCNNFSINIEKKETGDGDNKITYYVAHLNVKDISSIKSAFAQNRFGRNITETTSNIA 117 Query: 134 SSNNAIFAINGDYYGFRNDGVIIRNGTLYRDDPVRDAMALFKDGTMQTYSEEEVSSSDLL 193 SSNNAIFAINGDYYGFR DG+IIRNGTLYRD P R+ +A F DGT+ Y E + +DLL Sbjct: 118 SSNNAIFAINGDYYGFREDGIIIRNGTLYRDAPARNGLAFFNDGTINIYDETATNGNDLL 177 Query: 194 AQGAANTLSFGPILIQDGKIASDFSNVKIDTNFGNRSIQNANPRTAVGMIAPNHYVFVVV 253 AQG NT SFGP L+ +GK ++F+NVKID+NFGNR+I N+NPRT +GMI+PN++VFVVV Sbjct: 178 AQGVTNTFSFGPSLLDNGKAITNFNNVKIDSNFGNRNIDNSNPRTGIGMISPNNFVFVVV 237 Query: 254 DGRSEGYSRGMTLTELANVMSDLGATEAYNLDGGGSSTMYFMGRVVNNPQGKNQERGVSD 313 DGR GYSRGMTL E + + DLG T AYNLDGGGSSTMYF GRVVNNP GK+ ER VSD Sbjct: 238 DGRDNGYSRGMTLNEFSQLFEDLGCTYAYNLDGGGSSTMYFNGRVVNNPGGKDSERKVSD 297 Query: 314 ILYI 317 I+YI Sbjct: 298 IIYI 301 >B1QS54.1 B1QS54_CLOBU Putative exopolysaccharide biosynthesis protein Length = 302 Score = 335 bits (858), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 158/244 (64%), Positives = 194/244 (79%) Query: 74 WNYSSDDIQIRIDQVQTGSGPDQITYFVADVVLKDKNSLRAAFADNSFGTNITEDTSEIA 133 WNYS ++ I I++ +TG G ++ITY+VA + +KD +S+++AFA N FG NITE TS IA Sbjct: 58 WNYSCNNFSINIEKKETGDGDNKITYYVAHLNVKDISSIKSAFAQNRFGRNITETTSNIA 117 Query: 134 SSNNAIFAINGDYYGFRNDGVIIRNGTLYRDDPVRDAMALFKDGTMQTYSEEEVSSSDLL 193 SSNNAIFAINGDYYGFR DG+IIRNGTLYRD P R+ +A F DGT+ Y E + +DLL Sbjct: 118 SSNNAIFAINGDYYGFREDGIIIRNGTLYRDAPARNGLAFFNDGTINIYDETATNGNDLL 177 Query: 194 AQGAANTLSFGPILIQDGKIASDFSNVKIDTNFGNRSIQNANPRTAVGMIAPNHYVFVVV 253 AQG NT SFGP L+ +GK ++F+NVKID+NFGNR+I N+NPRT +GMI+PN++VFVVV Sbjct: 178 AQGVTNTFSFGPSLLDNGKAITNFNNVKIDSNFGNRNIDNSNPRTGIGMISPNNFVFVVV 237 Query: 254 DGRSEGYSRGMTLTELANVMSDLGATEAYNLDGGGSSTMYFMGRVVNNPQGKNQERGVSD 313 DGR GYSRGMTL E + + DLG T AYNLDGGGSSTMYF GRVVNNP GK+ ER VSD Sbjct: 238 DGRDNGYSRGMTLNEFSQLFEDLGCTYAYNLDGGGSSTMYFNGRVVNNPGGKDSERKVSD 297 Query: 314 ILYI 317 I+YI Sbjct: 298 IIYI 301 >B8HFZ1.1 B8HFZ1_ARTCA Putative uncharacterized protein Length = 203 Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 125/199 (62%), Positives = 155/199 (77%) Query: 119 NSFGTNITEDTSEIASSNNAIFAINGDYYGFRNDGVIIRNGTLYRDDPVRDAMALFKDGT 178 +SFG NITE TS IA +NNAIFAINGDYYGFR+ G++IRNG ++RD+ R +A ++DGT Sbjct: 3 DSFGENITETTSAIAEANNAIFAINGDYYGFRDTGIVIRNGVVFRDEGARQGLAFYRDGT 62 Query: 179 MQTYSEEEVSSSDLLAQGAANTLSFGPILIQDGKIASDFSNVKIDTNFGNRSIQNANPRT 238 ++ Y E ++ LLA G NTLSFGP L+ +G+IA+ +V++DTNFGN SIQ PRT Sbjct: 63 VKVYDETSTTAEQLLADGVWNTLSFGPSLLDNGEIAAGIEDVEVDTNFGNHSIQGEQPRT 122 Query: 239 AVGMIAPNHYVFVVVDGRSEGYSRGMTLTELANVMSDLGATEAYNLDGGGSSTMYFMGRV 298 AVG+I NH VFVVVDGRS GYS G+T+T LA +M LGAT AYN+DGGGSSTMYF G + Sbjct: 123 AVGIIDENHLVFVVVDGRSPGYSAGVTMTGLAEIMQGLGATTAYNIDGGGSSTMYFNGGL 182 Query: 299 VNNPQGKNQERGVSDILYI 317 VNNP G+N+ERG SDILYI Sbjct: 183 VNNPLGENKERGTSDILYI 201 >B6FL33.1 B6FL33_9CLOT Putative uncharacterized protein Length = 300 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 125/247 (50%), Positives = 159/247 (64%), Gaps = 17/247 (6%) Query: 76 YSSDDIQIRIDQVQTGSGPDQITYFVADVVLKDKNSLRAAFADNSFGTNITEDTSEIASS 135 YS D+IQI + + + + T +VADVVL L+ AFA +S+G N+TE TSE+A Sbjct: 64 YSDDNIQITLTEYR----ENDTTVYVADVVLSSPEYLQTAFAQSSYGRNVTEKTSEMAQD 119 Query: 136 NNAIFAINGDYYGFRNDGVIIRNGTLYRDDPVRDA--MALFKDGTMQTYSEEEVSSSDLL 193 I AINGDYYG + G +IR+G LYRD D + +++DGTM+ SE+EV++ +LL Sbjct: 120 AGTILAINGDYYGAQEKGYVIRDGVLYRDTAKTDQQDLVIYEDGTMKIISEDEVTAEELL 179 Query: 194 AQGAANTLSFGPILIQDGKIASDFSNVKIDTNFGNRSIQNANPRTAVGMIAPNHYVFVVV 253 +GA LSFGP LI DG+IA S+ G +NPRTA+GMI HYVFVV Sbjct: 180 EEGAKEVLSFGPALITDGEIAVTESD-----EVGKA--MASNPRTAIGMIDDLHYVFVVS 232 Query: 254 DGRSEGYSRGMTLTELANVMSDLGATEAYNLDGGGSSTMYFMGRVVNNP--QGKN-QERG 310 DGR+E S G++L ELA M LG AYNLDGGGSSTMYF G V+N P GK+ QER Sbjct: 233 DGRTEE-SEGLSLLELAEFMDSLGVKTAYNLDGGGSSTMYFNGEVINQPTTNGKSIQERS 291 Query: 311 VSDILYI 317 VSDI+YI Sbjct: 292 VSDIVYI 298 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,606,524,863 Number of extensions: 62899850 Number of successful extensions: 147750 Number of sequences better than 1.0e-05: 254 Number of HSP's gapped: 147537 Number of HSP's successfully gapped: 254 Length of query: 323 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 187 Effective length of database: 1,779,438,163 Effective search space: 332754936481 Effective search space used: 332754936481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)