BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0048.p (238 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KEN2.1 Q9KEN2_BACHD Two-component response regulator 316 1e-84 P42244.3 YCBL_BACSU Uncharacterized transcriptional regulatory p... 299 2e-79 C0ZFS3.1 C0ZFS3_BREBN Two-component response regulator 288 3e-76 A7ZA04.1 A7ZA04_BACA2 Two-component response regulator 285 3e-75 B7IJT7.1 B7IJT7_BACC2 DNA-binding response regulator 280 7e-74 >Q9KEN2.1 Q9KEN2_BACHD Two-component response regulator Length = 234 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 156/236 (66%), Positives = 182/236 (77%), Gaps = 10/236 (4%) Query: 1 VLLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHGGAYDLVLLDLMLPKRSGSD 60 +LLIEDD +ISEMV+ +L EGY V AFDG+ A RLF YDLVLLDLMLP+R+G D Sbjct: 6 ILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQN-TYDLVLLDLMLPRRNGID 64 Query: 61 VLQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRA-GY 119 LQ IR S+VPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIEL ARVKAAIRR Y Sbjct: 65 CLQWIRTKSVVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVNY 124 Query: 120 AAVGSSGQEAAPAQEKANIISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSPGR 179 A S + I + L V+L +F+V K GEE+KLTAKEFQIL +F + P + Sbjct: 125 AQASQSAENER--------IKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKK 176 Query: 180 VYTKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGYKLGD 235 V+TK Q+Y+SVW DDYY DENVINVH+RRLREKIED PSKP+YIKT+WGIGY++G+ Sbjct: 177 VFTKEQLYRSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRMGE 232 >P42244.3 YCBL_BACSU Uncharacterized transcriptional regulatory protein ycbL Length = 226 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 149/234 (63%), Positives = 184/234 (78%), Gaps = 9/234 (3%) Query: 2 LLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHGGAYDLVLLDLMLPKRSGSDV 61 +L+EDD +ISEMV YL KEG+ + AFDG+ RLF G +YDLVLLD+MLPK +G D Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQG-SYDLVLLDIMLPKLNGMDF 59 Query: 62 LQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRAGYAA 121 L+ IR S +PVL++SAKD DVDKALGLGFGADDYI KPFSMIEL ARVKAAIRRA Sbjct: 60 LKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRA---- 115 Query: 122 VGSSGQEAAPAQEKANIISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSPGRVY 181 S +E PA K +I + L +D+DN SVLKNGE ++LT+ E+Q+L +FAS+P +V+ Sbjct: 116 TQYSAEE--PAVNK--VIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVF 171 Query: 182 TKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGYKLGD 235 TK QIY+SVW ++Y+ D+N+INVHMRRLREKIEDDPS P+YIKTLWGIGYKLG+ Sbjct: 172 TKEQIYRSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225 >C0ZFS3.1 C0ZFS3_BREBN Two-component response regulator Length = 234 Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 143/233 (61%), Positives = 175/233 (75%), Gaps = 10/233 (4%) Query: 1 VLLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHG-GAYDLVLLDLMLPKRSGS 59 + +IEDD+AI EMV +YL KEGY V A DGD R F G +DL+L+DLM+PK G Sbjct: 8 IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGDEGLRKFEQAQGRFDLLLVDLMMPKIDGM 67 Query: 60 DVLQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRAGY 119 +V++ IR S VP+LIMSAKDSD+DKALGLGFGADDYI KPFSMIEL+AR+KA IRRA Sbjct: 68 EVIRRIRAYSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARLKAIIRRA-- 125 Query: 120 AAVGSSGQEAAPAQEKANIISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSPGR 179 + A + K N +++ L +D D+F+V K E +KLT+KEF+IL +FA+ P R Sbjct: 126 -------TQYASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNR 178 Query: 180 VYTKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGYK 232 V+TKAQIY VW DDYYGDENVINVHM RLR+KIED+PS+P YIKTLWGIGYK Sbjct: 179 VFTKAQIYAKVWNDDYYGDENVINVHMSRLRDKIEDNPSEPRYIKTLWGIGYK 231 >A7ZA04.1 A7ZA04_BACA2 Two-component response regulator Length = 232 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 142/235 (60%), Positives = 177/235 (75%), Gaps = 8/235 (3%) Query: 1 VLLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHGGAYDLVLLDLMLPKRSGSD 60 +L++EDD+ IS+MV L KEG+EV AF+G+ A + + ++++LLDLMLPK G + Sbjct: 5 ILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILN-TQKFEVILLDLMLPKIDGME 63 Query: 61 VLQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRAGYA 120 L+ IR S+VPVLIMSAKD DVDKALGLG GADDYI+KPFSM+E+ AR+KA IRR + Sbjct: 64 CLRMIRSKSMVPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRERHY 123 Query: 121 AVGSSGQEAAPAQEKANIISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSPGRV 180 S +E II + L+VDL FSV K E++ LTAKEF IL +F S+P +V Sbjct: 124 KSSLSSKEE-------KIIKIGDLSVDLHGFSVKKFNEKINLTAKEFNILKLFISNPSQV 176 Query: 181 YTKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGYKLGD 235 YTK+Q+YKSVWED+Y+GDENVINVH+RRLREKIEDDPS P YIKTLWGIGYKLGD Sbjct: 177 YTKSQLYKSVWEDEYHGDENVINVHIRRLREKIEDDPSHPMYIKTLWGIGYKLGD 231 >B7IJT7.1 B7IJT7_BACC2 DNA-binding response regulator Length = 230 Score = 280 bits (716), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 141/233 (60%), Positives = 174/233 (74%), Gaps = 10/233 (4%) Query: 1 VLLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHGGAYDLVLLDLMLPKRSGSD 60 +LL+EDD +I EMV YL+KEG++V A DG+A + F ++DLV+LD+M+PK G + Sbjct: 5 ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKS-SFDLVILDIMMPKLDGLE 63 Query: 61 VLQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRAGYA 120 V++ IR S VP+L+MSAKD+DVDKA+GLG GADDYI KPFSMIELAARVKA IRR Sbjct: 64 VVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR---- 119 Query: 121 AVGSSGQEAAPAQEKANIISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSPGRV 180 S+ A EK +I + LT+D NF+V KNG +KLT KEF+IL +F + RV Sbjct: 120 ---STKYSATETTEK--MIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRV 174 Query: 181 YTKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGYKL 233 +TKAQIY VW ++YYGD+NVINVHMRRLREKIE DPS PEYIKTLWGIGYKL Sbjct: 175 FTKAQIYTLVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,433,670,165 Number of extensions: 59205067 Number of successful extensions: 271247 Number of sequences better than 1.0e-05: 23172 Number of HSP's gapped: 237261 Number of HSP's successfully gapped: 23226 Length of query: 238 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 106 Effective length of database: 1,817,122,223 Effective search space: 192614955638 Effective search space used: 192614955638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)