BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0047.p (311 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P42245.2 YCBM_BACSU Sensor histidine kinase ycbM EC=2.7.13.3 322 3e-86 C3FR97.1 C3FR97_BACTB Putative uncharacterized protein 320 1e-85 C3D7W1.1 C3D7W1_BACTU Putative uncharacterized protein 320 1e-85 C3CPW9.1 C3CPW9_BACTU Putative uncharacterized protein 320 1e-85 C3E9B2.1 C3E9B2_BACTU Putative uncharacterized protein 319 2e-85 >P42245.2 YCBM_BACSU Sensor histidine kinase ycbM EC=2.7.13.3 Length = 311 Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 152/311 (48%), Positives = 218/311 (70%) Query: 1 MIAFWSVAVXXXXXXXXXXXXXXREHSRRLEYIHTKLTDIMDRDSHERLLLFNSDPHLQK 60 M W AV ++ L Y +L+ ++ RDS ++LL D L+ Sbjct: 1 MTVLWVAAVIALACLNVIQFIMKKKRDGNLAYTADQLSYMLSRDSAGQILLPTDDHALKD 60 Query: 61 LLTDLNRLLDVNHRGAVELAKLEKSMRSMLANISHDLKTPLTVVLGYIETVLQDQTMPME 120 LL ++N +++ + + + AK E+SM+ ML N+SHDLKTPLTV+LGYIE + D MP E Sbjct: 61 LLVNINLIVENRQQISAQFAKTEQSMKRMLTNMSHDLKTPLTVILGYIEAIQSDPNMPDE 120 Query: 121 EQEKILRMIHAKAEEVIRLMNSFFDLAKLESGDKDIPLSRVELGEVCRRNILSFYEILNA 180 E+E++L + K E+I+++NSFFDLAKLES DK+IP+++V + ++C+RNIL +Y+ + + Sbjct: 121 ERERLLGKLRQKTNELIQMINSFFDLAKLESEDKEIPITKVHMNDICKRNILHYYDAVQS 180 Query: 181 KGSEVDIELPDEALYIMGNEEALDRVLSNLLSNAIKYGDAGGVLGLRLYSDGDQVCIEVW 240 KG + I++PD +Y NEEALDR+L NLLSNAI+YG AG ++GL L D + I VW Sbjct: 181 KGFQAAIDIPDTPVYAQANEEALDRILQNLLSNAIQYGAAGKLIGLTLSYDERNIAITVW 240 Query: 241 DRGKGITEGDQDKVFERLYTLEDSRNRDYQGSGLGLTITKRLTEQMNGSITLRSKPHVKT 300 DRGKGI+E DQ +VFERLYTLE+SRN+ +QGSGLGLTITKRLTE+M G I+++SKP+ +T Sbjct: 241 DRGKGISETDQQRVFERLYTLEESRNKAFQGSGLGLTITKRLTEKMGGIISVQSKPYERT 300 Query: 301 AFTLSFRRQTF 311 AFT++ +R T+ Sbjct: 301 AFTITLKRMTY 311 >C3FR97.1 C3FR97_BACTB Putative uncharacterized protein Length = 311 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 157/288 (54%), Positives = 208/288 (72%) Query: 24 REHSRRLEYIHTKLTDIMDRDSHERLLLFNSDPHLQKLLTDLNRLLDVNHRGAVELAKLE 83 + S+ L Y + KL I++ + E+LL+ D LQKLL +N+LLD + + AK+E Sbjct: 24 KNSSKNLRYTYEKLESIVNVQTGEKLLVMTDDRELQKLLVAINQLLDAKQKTNADHAKVE 83 Query: 84 KSMRSMLANISHDLKTPLTVVLGYIETVLQDQTMPMEEQEKILRMIHAKAEEVIRLMNSF 143 SMR ML+NISHDLKTPLTV+LGY E + +D+TM EEQ+ +L +H K EV+ L++ F Sbjct: 84 ISMRKMLSNISHDLKTPLTVILGYTEMLNKDKTMNKEEQQILLEKVHVKTLEVMELIHKF 143 Query: 144 FDLAKLESGDKDIPLSRVELGEVCRRNILSFYEILNAKGSEVDIELPDEALYIMGNEEAL 203 FDLAKLESGDK I +++V + EVCR ILSFY+++ KG +V I++P++ +Y +GN E L Sbjct: 144 FDLAKLESGDKAIEMTKVNMNEVCREKILSFYDLVTTKGFQVHIDIPEKNIYALGNVEVL 203 Query: 204 DRVLSNLLSNAIKYGDAGGVLGLRLYSDGDQVCIEVWDRGKGITEGDQDKVFERLYTLED 263 RVL+NL+SNAI YGD G +LG+ L D V I+VWD+GKGI E DKVFER+YTLED Sbjct: 204 GRVLNNLISNAITYGDDGKILGMTLRDDETNVYIDVWDKGKGIDESHIDKVFERMYTLED 263 Query: 264 SRNRDYQGSGLGLTITKRLTEQMNGSITLRSKPHVKTAFTLSFRRQTF 311 SRNR YQGSGLGLTITKRL E M+G I L SKP+ KT FT++ ++ F Sbjct: 264 SRNRLYQGSGLGLTITKRLVEAMDGKIHLSSKPYEKTIFTVALKKMQF 311 >C3D7W1.1 C3D7W1_BACTU Putative uncharacterized protein Length = 311 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 157/288 (54%), Positives = 208/288 (72%) Query: 24 REHSRRLEYIHTKLTDIMDRDSHERLLLFNSDPHLQKLLTDLNRLLDVNHRGAVELAKLE 83 + S+ L Y + KL I++ + E+LL+ D LQKLL +N+LLD + + AK+E Sbjct: 24 KNSSKNLRYTYEKLESIVNVQTGEKLLVMTDDRELQKLLVAINQLLDAKQKTNADHAKVE 83 Query: 84 KSMRSMLANISHDLKTPLTVVLGYIETVLQDQTMPMEEQEKILRMIHAKAEEVIRLMNSF 143 SMR ML+NISHDLKTPLTV+LGY E + +D+TM EEQ+ +L +H K EV+ L++ F Sbjct: 84 ISMRKMLSNISHDLKTPLTVILGYTEMLNKDKTMNKEEQQILLEKVHVKTLEVMELIHKF 143 Query: 144 FDLAKLESGDKDIPLSRVELGEVCRRNILSFYEILNAKGSEVDIELPDEALYIMGNEEAL 203 FDLAKLESGDK I +++V + EVCR ILSFY+++ KG +V I++P++ +Y +GN E L Sbjct: 144 FDLAKLESGDKAIEMTKVNMNEVCREKILSFYDLVTTKGFQVHIDIPEKNIYALGNVEVL 203 Query: 204 DRVLSNLLSNAIKYGDAGGVLGLRLYSDGDQVCIEVWDRGKGITEGDQDKVFERLYTLED 263 RVL+NL+SNAI YGD G +LG+ L D V I+VWD+GKGI E DKVFER+YTLED Sbjct: 204 GRVLNNLISNAITYGDDGKILGMTLRDDETNVYIDVWDKGKGIDESHIDKVFERMYTLED 263 Query: 264 SRNRDYQGSGLGLTITKRLTEQMNGSITLRSKPHVKTAFTLSFRRQTF 311 SRNR YQGSGLGLTITKRL E M+G I L SKP+ KT FT++ ++ F Sbjct: 264 SRNRLYQGSGLGLTITKRLVEAMDGKIHLSSKPYEKTIFTVALKKMQF 311 >C3CPW9.1 C3CPW9_BACTU Putative uncharacterized protein Length = 311 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 157/288 (54%), Positives = 208/288 (72%) Query: 24 REHSRRLEYIHTKLTDIMDRDSHERLLLFNSDPHLQKLLTDLNRLLDVNHRGAVELAKLE 83 + S+ L Y + KL I++ + E+LL+ D LQKLL +N+LLD + + AK+E Sbjct: 24 KNSSKNLRYTYEKLESIVNVQTGEKLLVMTDDRELQKLLVAINQLLDAKQKTNADHAKVE 83 Query: 84 KSMRSMLANISHDLKTPLTVVLGYIETVLQDQTMPMEEQEKILRMIHAKAEEVIRLMNSF 143 SMR ML+NISHDLKTPLTV+LGY E + +D+TM EEQ+ +L +H K EV+ L++ F Sbjct: 84 ISMRKMLSNISHDLKTPLTVILGYTEMLNKDKTMNKEEQQILLEKVHVKTLEVMELIHKF 143 Query: 144 FDLAKLESGDKDIPLSRVELGEVCRRNILSFYEILNAKGSEVDIELPDEALYIMGNEEAL 203 FDLAKLESGDK I +++V + EVCR ILSFY+++ KG +V I++P++ +Y +GN E L Sbjct: 144 FDLAKLESGDKAIEMTKVNMNEVCREKILSFYDLVTTKGFQVHIDIPEKNIYALGNVEVL 203 Query: 204 DRVLSNLLSNAIKYGDAGGVLGLRLYSDGDQVCIEVWDRGKGITEGDQDKVFERLYTLED 263 RVL+NL+SNAI YGD G +LG+ L D V I+VWD+GKGI E DKVFER+YTLED Sbjct: 204 GRVLNNLISNAITYGDDGKILGMTLRDDETNVYIDVWDKGKGIDESHIDKVFERMYTLED 263 Query: 264 SRNRDYQGSGLGLTITKRLTEQMNGSITLRSKPHVKTAFTLSFRRQTF 311 SRNR YQGSGLGLTITKRL E M+G I L SKP+ KT FT++ ++ F Sbjct: 264 SRNRLYQGSGLGLTITKRLVEAMDGKIHLSSKPYEKTIFTVALKKMQF 311 >C3E9B2.1 C3E9B2_BACTU Putative uncharacterized protein Length = 311 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 158/288 (54%), Positives = 206/288 (71%) Query: 24 REHSRRLEYIHTKLTDIMDRDSHERLLLFNSDPHLQKLLTDLNRLLDVNHRGAVELAKLE 83 + S+ L Y + KL I++ + E+LL+ D LQKLL +N+LLD + + AK+E Sbjct: 24 KNSSKSLRYTYEKLESIVNEKTGEKLLVMTDDLELQKLLVAINQLLDAKQKTNADHAKVE 83 Query: 84 KSMRSMLANISHDLKTPLTVVLGYIETVLQDQTMPMEEQEKILRMIHAKAEEVIRLMNSF 143 SMR ML+NISHDLKTPLTV+LGY E + +D+TM EEQ+ +L +H K EV+ L++ F Sbjct: 84 ISMRKMLSNISHDLKTPLTVILGYTEMLNKDKTMNKEEQQILLEKVHVKTLEVMELIHKF 143 Query: 144 FDLAKLESGDKDIPLSRVELGEVCRRNILSFYEILNAKGSEVDIELPDEALYIMGNEEAL 203 FDLAKLESGDK I +++V + EVCR ILSFY+++ AKG +V I++P+ +Y +GN E L Sbjct: 144 FDLAKLESGDKAIEMTKVNMNEVCREKILSFYDLVTAKGFQVHIDIPERNIYALGNVEVL 203 Query: 204 DRVLSNLLSNAIKYGDAGGVLGLRLYSDGDQVCIEVWDRGKGITEGDQDKVFERLYTLED 263 RVL+NL+SNAI YGD G LG+ L D V I+VWD GKGI E DKVFER+YTLED Sbjct: 204 GRVLNNLISNAITYGDDGKALGMTLRDDETNVYIDVWDTGKGIDESHIDKVFERMYTLED 263 Query: 264 SRNRDYQGSGLGLTITKRLTEQMNGSITLRSKPHVKTAFTLSFRRQTF 311 SRNR YQGSGLGLTITKRL E M+G I L SKP+ KT FT++ ++ F Sbjct: 264 SRNRLYQGSGLGLTITKRLVEAMDGKIHLSSKPYEKTIFTVALKKMQF 311 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,682,519,369 Number of extensions: 70363747 Number of successful extensions: 302123 Number of sequences better than 1.0e-05: 28555 Number of HSP's gapped: 258614 Number of HSP's successfully gapped: 28634 Length of query: 311 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 176 Effective length of database: 1,788,859,178 Effective search space: 314839215328 Effective search space used: 314839215328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)