BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0567.0045.p
         (248 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2Y003.1 C2Y003_BACCE ABC transporter, ATP-binding protein            350   7e-95
C3ABK7.1 C3ABK7_BACMY ABC transporter, ATP-binding protein            347   8e-94
C2WCT5.1 C2WCT5_BACCE ABC transporter, ATP-binding protein            347   8e-94
C2SQZ1.1 C2SQZ1_BACCE ABC transporter, ATP-binding protein            346   1e-93
B5VBA3.1 B5VBA3_BACCE Bacitracin ABC transporter, ATP-binding pr...   345   2e-93

>C2Y003.1 C2Y003_BACCE ABC transporter, ATP-binding protein
          Length = 307

 Score =  350 bits (897), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 168/238 (70%), Positives = 200/238 (84%)

Query: 1   MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60
           MT IL+T  LTK ++GKE +S VNM VK+GEIYGFLGPNGAGKTT+MKMITNL+KPT G 
Sbjct: 1   MTYILKTNQLTKVFKGKEVISSVNMHVKKGEIYGFLGPNGAGKTTIMKMITNLIKPTSGD 60

Query: 61  IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHGEYMGYYDARAMEEALELV 120
           IE FG  +TD SYE+LKRMG IIE P+FYDKLTA+ENL+LH EYMGYYD  A++ AL LV
Sbjct: 61  IEIFGEKLTDTSYEVLKRMGTIIEYPIFYDKLTAKENLELHCEYMGYYDKNAIDHALNLV 120

Query: 121 KLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLSR 180
           KL G+D K VK FSLGMKQRLGIARA+MTKPELLILDEPINGLDP+GIKE+RE+F+ML +
Sbjct: 121 KLHGIDNKKVKDFSLGMKQRLGIARAIMTKPELLILDEPINGLDPIGIKELRELFKMLCK 180

Query: 181 EYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIELITGESGKA 238
           EYG+TLL+SSHILGE+EQ+ADTIGVI  G L++EV+M  I  + T YIE+ T +  +A
Sbjct: 181 EYGITLLVSSHILGEMEQMADTIGVIQNGKLIKEVSMKSINGKQTEYIEITTPDVKRA 238


>C3ABK7.1 C3ABK7_BACMY ABC transporter, ATP-binding protein
          Length = 307

 Score =  347 bits (889), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 166/238 (69%), Positives = 199/238 (83%)

Query: 1   MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60
           MT IL+T  LTK ++GKE +S VNM VK+GEIYGFLGPNGAGKTT+MKMITNL+KPT G 
Sbjct: 1   MTYILKTNQLTKVFKGKEVISSVNMHVKKGEIYGFLGPNGAGKTTIMKMITNLIKPTSGD 60

Query: 61  IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHGEYMGYYDARAMEEALELV 120
           IE FG  +TD SYE+LKRMG IIE P+FYDKLTA+ENL+LH EYMGYYD  A++ AL LV
Sbjct: 61  IEIFGEKLTDTSYEVLKRMGTIIEYPIFYDKLTAKENLELHCEYMGYYDKNAIDHALNLV 120

Query: 121 KLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLSR 180
           KL G+D K VK FSLGMKQRLGIARA+MTKPELLILDEPINGLDP+GIKE+R++F+ML +
Sbjct: 121 KLHGIDDKKVKDFSLGMKQRLGIARAIMTKPELLILDEPINGLDPIGIKELRDLFKMLCK 180

Query: 181 EYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIELITGESGKA 238
           EYG+TLL+SSHILGE+EQ+ADTIGVI  G L++EV+M  I  + T YIE+   +  +A
Sbjct: 181 EYGITLLVSSHILGEMEQMADTIGVIQNGKLIKEVSMKSINGKQTEYIEITVPDVKRA 238


>C2WCT5.1 C2WCT5_BACCE ABC transporter, ATP-binding protein
          Length = 307

 Score =  347 bits (889), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 166/232 (71%), Positives = 194/232 (83%)

Query: 1   MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60
           MT IL+T  LTK +QGKE +SGVNM VK+GEIYGFLGPNGAGKTT+MKMITNL+KPT G 
Sbjct: 1   MTYILKTNQLTKVFQGKEVISGVNMHVKKGEIYGFLGPNGAGKTTIMKMITNLIKPTSGD 60

Query: 61  IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHGEYMGYYDARAMEEALELV 120
           IE FG   TD SYE+LKRMG IIE P+FY+KLTARENL LH EYMGYYD +A+  AL+LV
Sbjct: 61  IEIFGEKFTDTSYEVLKRMGTIIEYPIFYEKLTARENLHLHCEYMGYYDKKAINRALDLV 120

Query: 121 KLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLSR 180
            L  +D K VK FSLGMKQRLGIARA+MTKPE LILDEPINGLDP+GIKE+RE+F+ML +
Sbjct: 121 NLHNIDNKKVKDFSLGMKQRLGIARAIMTKPEFLILDEPINGLDPIGIKELRELFKMLCK 180

Query: 181 EYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIELIT 232
           EYG+TLL+SSHILGE+EQ+ADTIGVI  G L++EV+M  I  + T YIE+ T
Sbjct: 181 EYGITLLVSSHILGEMEQMADTIGVIQNGKLIKEVSMKSINGKQTEYIEITT 232


>C2SQZ1.1 C2SQZ1_BACCE ABC transporter, ATP-binding protein
          Length = 307

 Score =  346 bits (887), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/238 (69%), Positives = 199/238 (83%)

Query: 1   MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60
           MT IL+T  LTK ++GKE +S VNM VK+GEIYGFLGPNGAGKTT+MKMITNL+KPT G 
Sbjct: 1   MTYILKTNQLTKVFKGKEVISSVNMHVKKGEIYGFLGPNGAGKTTIMKMITNLIKPTSGD 60

Query: 61  IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHGEYMGYYDARAMEEALELV 120
           IE FG  +TD SYE+LKRMG IIE P+FYDKLTA+ENL+LH EYMGYYD  A++ AL LV
Sbjct: 61  IEIFGEKLTDTSYEVLKRMGTIIEYPIFYDKLTAKENLELHCEYMGYYDKNAIDHALNLV 120

Query: 121 KLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLSR 180
           KL G+D K VK FSLGMKQRLGIARA+MTKPELLILDEPINGLDP+GIKE+R++F+ML +
Sbjct: 121 KLHGIDDKKVKDFSLGMKQRLGIARAIMTKPELLILDEPINGLDPIGIKELRDLFKMLCK 180

Query: 181 EYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIELITGESGKA 238
           EYG+TLL+SSHILGE+EQ+ADTIGVI  G L++EV+M  I  + T YIE+   +  +A
Sbjct: 181 EYGITLLVSSHILGEMEQMADTIGVIQNGKLIKEVSMKSINGKQTEYIEITVPDVRRA 238


>B5VBA3.1 B5VBA3_BACCE Bacitracin ABC transporter, ATP-binding protein
          Length = 307

 Score =  345 bits (886), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 166/238 (69%), Positives = 199/238 (83%)

Query: 1   MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60
           MT IL+T  LTK ++GKE +S VNM VK+GEIYGFLGPNGAGKTT+MKMITNL+KPT G 
Sbjct: 1   MTYILKTNQLTKVFKGKEVISSVNMHVKKGEIYGFLGPNGAGKTTIMKMITNLIKPTSGD 60

Query: 61  IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHGEYMGYYDARAMEEALELV 120
           IE FG  +TD SYE+LKRMG IIE P+FYDKLTA+ENL+LH EYMGYYD  A++ AL LV
Sbjct: 61  IEIFGEKLTDTSYEVLKRMGTIIEYPIFYDKLTAKENLELHCEYMGYYDKNAIDHALHLV 120

Query: 121 KLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLSR 180
           KL+GVD K VK FSLGMKQRLGIARA+MTKPELLILDEPINGLDP+GIKE+R++F+ML +
Sbjct: 121 KLQGVDNKKVKNFSLGMKQRLGIARAIMTKPELLILDEPINGLDPIGIKELRDLFKMLCK 180

Query: 181 EYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIELITGESGKA 238
           EYG+TLL+SSHILGE+E +ADTIGVI  G L++EV+M  I  + T YIE+   +  +A
Sbjct: 181 EYGITLLVSSHILGEMELMADTIGVIQNGKLIKEVSMQSINGKQTEYIEITVPDVKRA 238


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,398,150,446
Number of extensions: 55689114
Number of successful extensions: 455879
Number of sequences better than 1.0e-05: 92213
Number of HSP's gapped: 358401
Number of HSP's successfully gapped: 98526
Length of query: 248
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 116
Effective length of database: 1,817,122,223
Effective search space: 210786177868
Effective search space used: 210786177868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)