BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0043.p (200 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KCJ6.1 B3KCJ6_9BACI Polysaccharide deacetylase 255 2e-66 A5D124.1 A5D124_PELTS Hypothetical membrane protein 96 2e-18 C0ZH27.1 C0ZH27_BREBN Putative uncharacterized protein 86 1e-15 B3KFM6.1 B3KFM6_9BACI Polysaccharide deacetylase 86 2e-15 A4J279.1 A4J279_DESRM Polysaccharide deacetylase 80 1e-13 >B3KCJ6.1 B3KCJ6_9BACI Polysaccharide deacetylase Length = 198 Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 118/180 (65%), Positives = 152/180 (84%) Query: 18 MAWEKVFALGSHFRGAGTSRFGICSVMLKKHRGKAIICQDSTVIHDGEWVGELHLDNGSI 77 M WE+ F+ S FR + SRFGIC+VM+KKHRG+ I+C+DSTVI DG+ VGELHLDN +I Sbjct: 1 MIWERFFSFISRFRSSHISRFGICTVMIKKHRGERIVCEDSTVIQDGDLVGELHLDNETI 60 Query: 78 LKLIKSEGSDRAALRTARMLRQSMRQINEAFESQSEFKQVKALMGITLLHRGITHGLGFE 137 LKLI++EG DRAAL+ AR+ R+SM+QI+ A+ESQSEF +V AL+GITLLHRG+THGLGFE Sbjct: 61 LKLIRAEGPDRAALKIARLGRKSMQQISRAYESQSEFSEVNALVGITLLHRGLTHGLGFE 120 Query: 138 QQAMQPGLFRRMTTIYLRLLLSALHPEGKNRIGQRTDQLVPMLLIHSRASLKDRFSPGQK 197 QAM+P LF+++TT YLR+LLS +HPEGK+RI +RT+ LVPM LIH+R+SL+ RFS G + Sbjct: 121 HQAMKPDLFQKLTTSYLRMLLSVMHPEGKSRIDRRTELLVPMKLIHTRSSLRKRFSMGDR 180 >A5D124.1 A5D124_PELTS Hypothetical membrane protein Length = 446 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Query: 13 VQSLWMAWEKVFALGSHFRGAGTSRFGICSVMLKKHRGKAIICQDSTVIHDGEWVGELHL 72 V+ LW EK L S R G + I + L+++RGK D +V+ GE ELH+ Sbjct: 247 VRMLWSLLEKAIRLCSGIRDLGDGKSSIWRIALRRYRGKEWHLPDGSVLRPGEQFLELHI 306 Query: 73 DNGSILKLI-KSEGSDRAALRTARMLRQSMRQINEAFESQSEFKQVKALMGITLLHRGIT 131 +N +L L+ +S +RA L + +R + + + F ++ L+GITLLHRG Sbjct: 307 NNERLLSLVDRSTSLERATLIALKEIRNGLADMACILMNDRRFCNIEVLLGITLLHRG-A 365 Query: 132 HGLGFEQQAMQPGLFRRMTTIYLRLLLSALHPEGKNRIGQRTDQLVPMLLIHSRASLKDR 191 +GF M+PGLFR +T Y + LL+ HP G + ++L P ++ SR L R Sbjct: 366 ELIGFTVFDMKPGLFRTVTGWYEQWLLALFHPGGFKNLKAYREKLTPKYVVISRRELVRR 425 Query: 192 F 192 + Sbjct: 426 Y 426 >C0ZH27.1 C0ZH27_BREBN Putative uncharacterized protein Length = 194 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 98/184 (53%), Gaps = 5/184 (2%) Query: 16 LWMAWEKVFALGSHFRGAGTSRFGICSVMLKKHRGKAIICQDSTVIHDGEWVGELHLDNG 75 LW W++++ + I V++ ++RG+ ++ D+ +IHDG+ + +LH+ N Sbjct: 8 LWGYWDEIYQRCTRLTYIEKGN-NIFRVVVLRYRGEPLVTTDNCIIHDGDLILKLHIHNY 66 Query: 76 SILKLIKSEGSD-RAALRTARMLRQSMRQINEAFESQSEFKQVKALMGITLLHRGITHGL 134 L K + R AL R + QS+ ++ +S Q+K ++G T+LH+GIT L Sbjct: 67 YFATLCKGVKDELRVALLLRRHILQSLPKLATFLDSMENKDQIKGIVGTTMLHKGIT-PL 125 Query: 135 GFEQQAMQPGLFRRMTTIYLRLLLSALHPEGKNRIGQRTDQLVPMLLIH-SRASLKDRFS 193 GF + F R YLRL+L +HP GK R+ Q + +P+ ++ S+ L +R++ Sbjct: 126 GFSISDVPMTWFFRYKRWYLRLMLRIVHPNGKRRL-QSWNYEMPLKRVYMSKEFLLNRYA 184 Query: 194 PGQK 197 G++ Sbjct: 185 DGKQ 188 >B3KFM6.1 B3KFM6_9BACI Polysaccharide deacetylase Length = 460 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 27/197 (13%) Query: 10 KSMVQSLWMAWEK----VFALGS--------HFRGAGTSRFGICSVMLKKHRGKAIICQD 57 K ++ SLW+ WEK VFAL + HFR + GK ++ +D Sbjct: 245 KRLIVSLWLLWEKAFHAVFALETVNPEDPMLHFRK-------------RAFTGKTVVMED 291 Query: 58 STVIHDGEWVGELHLDNGSILKL-IKSEGSDRAALRTARMLRQSMRQINEAFESQSEFKQ 116 + + G+ V ELH DN + ++ +S + A++ R +++ + + + EFK Sbjct: 292 GSRLEKGDQVLELHFDNKKLFEIGSRSRSEVQLAIKMIRAVQKDLPSLANMVLDRPEFKD 351 Query: 117 VKALMGITLLHRGITHGLGFEQQAMQPGLFRRMTTIYLRLLLSALHPEGKNRIGQRTDQL 176 +K L +T++ RG GF + GLF + +YL+LLLS +HP+G+ R+ + T + Sbjct: 352 IKGLYAVTMISRG-PEQFGFHVMDLPRGLFASSSRLYLKLLLSVIHPKGQARLKEGTQMM 410 Query: 177 VPMLLIHSRASLKDRFS 193 P +L+ L R++ Sbjct: 411 EPKMLVMPVDVLIGRYA 427 >A4J279.1 A4J279_DESRM Polysaccharide deacetylase Length = 425 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 5/184 (2%) Query: 10 KSMVQSLWMAWEKVFALGSHFRGAGTSRFGICSVMLKKHRGKAIICQDSTVIHDGEWVGE 69 K ++ LW WE F + + G G+ + ++ +RG+ + D T++ G+ V E Sbjct: 243 KKNLRRLWQVWELCFDRIAGLKPVGNE--GLFRLAVRSYRGQTLKLPDGTLLSPGDKVIE 300 Query: 70 LHLDNGSILKLI-KSEGSDRAALRTARMLRQSMRQINEAFESQSEFKQVKALMGITLLHR 128 LHL+N + +L K+ + A+ R R+S+ + + KAL+GIT++HR Sbjct: 301 LHLNNDFLQQLTTKARSLEATAIALLRETRRSLPLLAKFISQDPACNGTKALIGITMIHR 360 Query: 129 GITHGLGFEQQAMQPGLFRRMTTIYLRLLLSALHPEGKNRIGQRTDQLVPMLLIHSRASL 188 G T LGF + P + R + Y R LL +HP G + I ++ +LVP +I +R L Sbjct: 361 G-TPQLGFTVYDLSPRI-RSLVAWYQRWLLFLMHPGGLSHIRRQWSKLVPKKVIITRNEL 418 Query: 189 KDRF 192 +R+ Sbjct: 419 LNRY 422 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,107,480,429 Number of extensions: 39982706 Number of successful extensions: 78904 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 78904 Number of HSP's successfully gapped: 11 Length of query: 200 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 71 Effective length of database: 1,845,385,268 Effective search space: 131022354028 Effective search space used: 131022354028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)