BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0042.p (203 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFM6.1 B3KFM6_9BACI Polysaccharide deacetylase 211 5e-53 C5D4C3.1 C5D4C3_9BACI Polysaccharide deacetylase 203 7e-51 B1DIU6.1 B1DIU6_9BACL Polysaccharide deacetylase 201 4e-50 C1P831.1 C1P831_BACCO Polysaccharide deacetylase 200 7e-50 B7GJ24.1 B7GJ24_ANOFW Polysaccharide deacetylase 194 3e-48 >B3KFM6.1 B3KFM6_9BACI Polysaccharide deacetylase Length = 460 Score = 211 bits (536), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 100/201 (49%), Positives = 140/201 (69%), Gaps = 3/201 (1%) Query: 2 RRGTSPKEVAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGH 61 RRGT ++ A TFDDGP P YTPRLLDLL ++ +KATFF++GS AE++PE++KR+ EGH Sbjct: 32 RRGTGLEDFALTFDDGPDPFYTPRLLDLLKRYNMKATFFLVGSHAEKHPEVVKRIHSEGH 91 Query: 62 QIGIHNYIHTSNWLMLPGTIRRGHLKRTADIVESIIGTRPDYYRPPXXXXLINMFDFFRL 121 IGIHNY+H SNWLM P T+R+ +KRT DI+ +I G R YYRPP ++N+FDF + Sbjct: 92 LIGIHNYVHKSNWLMRPVTVRK-QVKRTDDIIYAITGERSRYYRPP--WGIVNLFDFAKN 148 Query: 122 KQYRIVLWSLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHDSGDTLGADGNAPHYMLQA 181 RI+LWS M +DW K L +L ++ G +++LHD G T+GA+ +AP ML A Sbjct: 149 TGCRIILWSSMFNDWRSKIGADKLTQRMLAKLNGGEVMLLHDCGTTMGANPDAPEQMLIA 208 Query: 182 LEEVLNQLKTRNLKCVRVDEM 202 LE VL + + ++ +R+D+M Sbjct: 209 LERVLKVAEQKGIRSIRIDDM 229 >C5D4C3.1 C5D4C3_9BACI Polysaccharide deacetylase Length = 240 Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 101/201 (50%), Positives = 141/201 (70%), Gaps = 3/201 (1%) Query: 2 RRGTSPKEVAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGH 61 R+GT P +A TFDDGP P YTPRLLDLL +H+VKATFFV+G +A++YP ++KRM EGH Sbjct: 31 RKGTQPGMIALTFDDGPDPYYTPRLLDLLKKHQVKATFFVVGKKAKQYPYIVKRMHDEGH 90 Query: 62 QIGIHNYIHTSNWLMLPGTIRRGHLKRTADIVESIIGTRPDYYRPPXXXXLINMFDFFRL 121 +IG+HNY H SNW + P + +G L+++ADI+E I+GTRP YYRPP N+F F Sbjct: 91 EIGMHNYRHISNWFIFPPFLEKG-LQKSADIIEQIVGTRPMYYRPPWGH--FNLFTPFLQ 147 Query: 122 KQYRIVLWSLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHDSGDTLGADGNAPHYMLQA 181 K+Y V+W+ + DW+ K L + L N ++DG++IVLHDSG T GAD AP ML A Sbjct: 148 KKYSTVMWTDILGDWNAKIGTMELFNRLKNSMKDGAVIVLHDSGKTFGADELAPEQMLSA 207 Query: 182 LEEVLNQLKTRNLKCVRVDEM 202 LE +L + + +N++ V + ++ Sbjct: 208 LELLLKEEEAKNMRWVTITDL 228 >B1DIU6.1 B1DIU6_9BACL Polysaccharide deacetylase Length = 467 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 134/201 (66%), Gaps = 3/201 (1%) Query: 2 RRGTSPKEVAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGH 61 ++G E+A TFDDGP PEYTP+LLDLLA++K KATFFV+GS AE++PE+++RM EGH Sbjct: 32 KKGHVASEIALTFDDGPDPEYTPQLLDLLARYKAKATFFVVGSHAEKHPEILRRMHEEGH 91 Query: 62 QIGIHNYIHTSNWLMLPGTIRRGHLKRTADIVESIIGTRPDYYRPPXXXXLINMFDFFRL 121 I IHNY+H +NW M P T+ R + RT+D++ +G R +YRPP ++N+FDF Sbjct: 92 IIAIHNYVHKTNWFMRPKTV-RSQIDRTSDVIREAVGIRSAFYRPP--WGIVNVFDFMNR 148 Query: 122 KQYRIVLWSLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHDSGDTLGADGNAPHYMLQA 181 + +I+LWS + DW+ K L+ ++ ++R G +++LHD G T GAD AP ML A Sbjct: 149 NKMQIILWSAIFGDWNVKLGAERLKQKMMKKMRPGEVLLLHDCGRTPGADPTAPANMLIA 208 Query: 182 LEEVLNQLKTRNLKCVRVDEM 202 L+ +++ R + V + EM Sbjct: 209 LKAYMDEATKRGFRFVGIAEM 229 >C1P831.1 C1P831_BACCO Polysaccharide deacetylase Length = 247 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 97/200 (48%), Positives = 132/200 (66%), Gaps = 3/200 (1%) Query: 3 RGTSPKEVAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGHQ 62 +G E+A TFDDGP P YTP LLDLL + ++KATFF++G +A RYPEL+ RM REGH Sbjct: 33 KGKKDAEIALTFDDGPDPVYTPVLLDLLKRERIKATFFLVGERAARYPELVLRMSREGHC 92 Query: 63 IGIHNYIHTSNWLMLPGTIRRGHLKRTADIVESIIGTRPDYYRPPXXXXLINMFDFFRLK 122 IG+HNY H NWL+ P R L+++A I+E+I G RP +YRPP ++++ DFF K Sbjct: 93 IGLHNYKHQCNWLISPWKNART-LEQSARIIENITGERPVFYRPP--WGMMHLLDFFLHK 149 Query: 123 QYRIVLWSLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHDSGDTLGADGNAPHYMLQAL 182 Q+R+V WS M DW RK + + L+ R+ G +I+LHD G T GAD +AP Y ++ L Sbjct: 150 QFRMVHWSKMFRDWKRKGGSKKVSNGLITRVESGDVILLHDCGVTPGADEDAPQYTIEGL 209 Query: 183 EEVLNQLKTRNLKCVRVDEM 202 + LK R + VR+DEM Sbjct: 210 RVAIPALKARGFRFVRMDEM 229 >B7GJ24.1 B7GJ24_ANOFW Polysaccharide deacetylase Length = 222 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 96/192 (50%), Positives = 130/192 (67%), Gaps = 6/192 (3%) Query: 10 VAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGHQIGIHNYI 69 VA TFDDGP P YTP+LLDLL ++ VKATFFV+G +A++YP LIKRM EGH IG+H+Y Sbjct: 36 VALTFDDGPDPVYTPQLLDLLKKYNVKATFFVVGWKAKKYPHLIKRMQEEGHTIGLHHYY 95 Query: 70 HTSNWLMLPGTIRRGHLKRTADIVESIIGTRPDYYRPPXXXXLINMFDFFRLKQYRIVLW 129 HTSNWL+LP + L+R+A ++E I G RP YYRPP IN++ F K+Y+IV+W Sbjct: 96 HTSNWLLLP-LVTEWELERSARVIEHITGARPVYYRPPWGH--INIWTLFMQKKYKIVMW 152 Query: 130 SLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHDSGDTLGADGNAPHYMLQALEEVLNQL 189 + + DW+ L L++ I DG+IIVLHDSG T+GAD +AP + LE + Sbjct: 153 TYILGDWNASLGVDRLYERLMSSIEDGAIIVLHDSGSTIGADEHAPANTIATLERLFQH- 211 Query: 190 KTRNLKCVRVDE 201 N+K V+++E Sbjct: 212 --TNVKWVKLNE 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,267,893,793 Number of extensions: 48639288 Number of successful extensions: 133215 Number of sequences better than 1.0e-05: 2505 Number of HSP's gapped: 130896 Number of HSP's successfully gapped: 2505 Length of query: 203 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 74 Effective length of database: 1,845,385,268 Effective search space: 136558509832 Effective search space used: 136558509832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)