BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0037.p (193 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LYW0.1 A6LYW0_CLOB8 Lysine exporter protein (LYSE/YGGA) 245 1e-63 B3KEF8.1 B3KEF8_9BACI Lysine exporter protein (LYSE/YGGA) 221 3e-56 A3IA69.1 A3IA69_9BACI Transporter, LysE family protein 211 2e-53 B1DB29.1 B1DB29_9BACL Lysine exporter protein (LYSE/YGGA) 196 9e-49 B7DJD3.1 B7DJD3_DESSA Lysine exporter protein (LYSE/YGGA) 176 1e-42 >A6LYW0.1 A6LYW0_CLOB8 Lysine exporter protein (LYSE/YGGA) Length = 198 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 118/192 (61%), Positives = 150/192 (78%) Query: 1 MNIASFIIYCIVVTFTPGPTNIVILSSVQHHGAKKTMEYVWGATIAFGMLLAASALLNHV 60 MNI SF+IYCI+VT TPGPTNIVILS+V + G KK MEY +GATIAFG+LL SA+LN V Sbjct: 1 MNITSFLIYCIIVTVTPGPTNIVILSTVNNWGTKKAMEYTYGATIAFGLLLIISAILNTV 60 Query: 61 LAGIIPDILVIMQIAGSLYMLYLAYQIYRMGRAEAAPVQTANFASGLLMQLINPKVLLFT 120 L ++P IL IMQI GSLY+LYLAYQI + +++ +TA F SG LMQ +NPKV+LFT Sbjct: 61 LMAVLPKILCIMQIIGSLYILYLAYQICKRDTSKSTAKETATFLSGFLMQFVNPKVVLFT 120 Query: 121 LTVIPSYVLPYYPSASASFLFVLMITVIGFLAFVTWVVCGAVFKNLLQQHHRLFNTLMAL 180 +TVIPS+V+PYY S +FV IT+IGF AF+TWV+ G +FK LQ+H ++ N +MAL Sbjct: 121 MTVIPSFVMPYYTKLSTLMVFVAYITIIGFGAFITWVLFGTIFKTFLQKHQKIVNIIMAL 180 Query: 181 FLVYSAVMVSGI 192 FLVYSA++VSG+ Sbjct: 181 FLVYSAIIVSGV 192 >B3KEF8.1 B3KEF8_9BACI Lysine exporter protein (LYSE/YGGA) Length = 198 Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 107/192 (55%), Positives = 152/192 (79%) Query: 1 MNIASFIIYCIVVTFTPGPTNIVILSSVQHHGAKKTMEYVWGATIAFGMLLAASALLNHV 60 MN++SF IYC +V F+PGP+NIVILSSVQ+ G KKT+ Y+ GA+IAF +L+AAS +L + Sbjct: 1 MNLSSFFIYCFIVAFSPGPSNIVILSSVQNSGMKKTLRYIAGASIAFFILIAASVVLGQL 60 Query: 61 LAGIIPDILVIMQIAGSLYMLYLAYQIYRMGRAEAAPVQTANFASGLLMQLINPKVLLFT 120 L+ +P IL IM++AG L+MLYLAYQ+Y M +++ QTA+F SG LMQ INPKV++FT Sbjct: 61 LSSGMPIILPIMRVAGCLFMLYLAYQVYNMDVSKSGVNQTASFTSGFLMQFINPKVVMFT 120 Query: 121 LTVIPSYVLPYYPSASASFLFVLMITVIGFLAFVTWVVCGAVFKNLLQQHHRLFNTLMAL 180 LTVIPSYV+PYY + FV+ +++IG A++TW VCG++F+ ++Q++ R NT++AL Sbjct: 121 LTVIPSYVMPYYTAGPVVSAFVVAVSLIGLSAYMTWAVCGSLFQGIMQKYRRTTNTILAL 180 Query: 181 FLVYSAVMVSGI 192 FL+YSA++VSGI Sbjct: 181 FLLYSAIVVSGI 192 >A3IA69.1 A3IA69_9BACI Transporter, LysE family protein Length = 192 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 100/189 (52%), Positives = 140/189 (74%) Query: 1 MNIASFIIYCIVVTFTPGPTNIVILSSVQHHGAKKTMEYVWGATIAFGMLLAASALLNHV 60 M+I SF++YC ++T TPGPTN+VILS+ Q++G KK + + +G+ IAF +LLA SA LN + Sbjct: 1 MDITSFLLYCFIITATPGPTNVVILSTTQNYGIKKGLHFSYGSAIAFFILLALSAFLNSL 60 Query: 61 LAGIIPDILVIMQIAGSLYMLYLAYQIYRMGRAEAAPVQTANFASGLLMQLINPKVLLFT 120 + ++P +L+IMQI G+ YMLYLAYQI +M + A + NF SG MQ +NPKV+LFT Sbjct: 61 FSTLVPKVLLIMQILGTAYMLYLAYQIVKMDISSDATNKVGNFKSGFFMQFLNPKVVLFT 120 Query: 121 LTVIPSYVLPYYPSASASFLFVLMITVIGFLAFVTWVVCGAVFKNLLQQHHRLFNTLMAL 180 +TVIPS+VLPYY S A F+ V IT+IG +AF+ WV+ GA+FK LQQH ++ N MA Sbjct: 121 MTVIPSFVLPYYESFFAIFVSVFAITLIGLIAFLLWVLFGAIFKQFLQQHKKVVNAFMAC 180 Query: 181 FLVYSAVMV 189 L+Y+A+M+ Sbjct: 181 CLIYAAIMI 189 >B1DB29.1 B1DB29_9BACL Lysine exporter protein (LYSE/YGGA) Length = 191 Score = 196 bits (498), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 96/189 (50%), Positives = 133/189 (70%) Query: 1 MNIASFIIYCIVVTFTPGPTNIVILSSVQHHGAKKTMEYVWGATIAFGMLLAASALLNHV 60 M+ SF +YC+V TFTPGPTNI+ILS+V++ G KK M + +G+TI FG+LL SA LN V Sbjct: 1 MDTTSFFVYCLVATFTPGPTNILILSTVKNAGTKKAMIFSYGSTIGFGLLLVCSAALNSV 60 Query: 61 LAGIIPDILVIMQIAGSLYMLYLAYQIYRMGRAEAAPVQTANFASGLLMQLINPKVLLFT 120 L ++P + ++Q+ GS YM+YLAY++ R +E+ Q A F G+L+Q +NPK +LF Sbjct: 61 LLSVMPKFITVLQVIGSAYMVYLAYRMVRSHHSESDVNQNATFRFGVLLQFLNPKTVLFA 120 Query: 121 LTVIPSYVLPYYPSASASFLFVLMITVIGFLAFVTWVVCGAVFKNLLQQHHRLFNTLMAL 180 LTVIP+++LP Y + + V IT+IGF AF TWV+ G VFK LQ+HH N +MAL Sbjct: 121 LTVIPAFILPTYSGFTGVSVGVAAITLIGFSAFFTWVLFGTVFKTFLQKHHTGANLVMAL 180 Query: 181 FLVYSAVMV 189 FL Y+AVM+ Sbjct: 181 FLAYAAVMI 189 >B7DJD3.1 B7DJD3_DESSA Lysine exporter protein (LYSE/YGGA) Length = 195 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 132/192 (68%), Gaps = 1/192 (0%) Query: 1 MNIASFIIYCIVVTFTPGPTNIVILSSVQHHGAKKTMEYVWGATIAFGMLLAASALLNHV 60 MNI +F+ Y IVVTFTPGP+NIVI S+ Q+HG KK +E+V GAT+AFG+LL+ SA LN Sbjct: 1 MNILAFLAYSIVVTFTPGPSNIVIFSTAQNHGYKKALEFVAGATLAFGILLSLSAALNSY 60 Query: 61 LAGIIPDILVIMQIAGSLYMLYLAYQIYRMGRAEAAPVQTANFASGLLMQLINPKVLLFT 120 L ++P + +M + G+ YMLYLA++I M + ++ F +G MQ INPKV+LFT Sbjct: 61 LFNMMPQVQTVMTVIGTSYMLYLAWKILHMDDGGNSK-KSGGFMTGFTMQFINPKVVLFT 119 Query: 121 LTVIPSYVLPYYPSASASFLFVLMITVIGFLAFVTWVVCGAVFKNLLQQHHRLFNTLMAL 180 LTVI S+V+P + L+VL++T IGF A+ +WVV G +F+ L+ + + N +++L Sbjct: 120 LTVIGSFVIPAFSDPLDIALYVLILTFIGFCAYSSWVVLGTLFRRYLRPYQKQANIILSL 179 Query: 181 FLVYSAVMVSGI 192 +VY A +SG+ Sbjct: 180 TMVYCAWSISGL 191 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,014,109,438 Number of extensions: 36085679 Number of successful extensions: 167985 Number of sequences better than 1.0e-05: 1437 Number of HSP's gapped: 168339 Number of HSP's successfully gapped: 1437 Length of query: 193 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 65 Effective length of database: 1,854,806,283 Effective search space: 120562408395 Effective search space used: 120562408395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 127 (53.5 bits)