BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0036.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1FU20.1 C1FU20_CLOBJ Transcription activator, effector binding 451 e-125 B1Q6K1.1 B1Q6K1_CLOBO Transcriptional regulator, AraC family 451 e-125 A6TND0.1 A6TND0_ALKMQ Transcription activator, effector binding 451 e-125 C2N866.1 C2N866_BACCE Transcriptional regulator, AraC 446 e-124 C2P5F6.1 C2P5F6_BACCE Transcriptional regulator, AraC 446 e-123 >C1FU20.1 C1FU20_CLOBJ Transcription activator, effector binding Length = 290 Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust. Identities = 207/287 (72%), Positives = 248/287 (86%) Query: 1 MNVLENMNDALSYIEDHLTEEIDFKEVTRRALCSEYHFKRMFSFLAGVPLSEYIRRRRLT 60 M+ L+ MND+++YIE++L EIDFKEV R A CSEYHF+RMFSFLAGV LSEYIRRRRLT Sbjct: 1 MDSLKRMNDSINYIEENLDGEIDFKEVARLAFCSEYHFQRMFSFLAGVSLSEYIRRRRLT 60 Query: 61 IAAFELQQSQLRIIDVAVHVGYSSPDAFTKAFQLFHGVTPSEARAGSPSLKSFPRMTFQL 120 +AAFEL S +RIID+AV GY SPD+FT+AFQ HG+TPSEAR S SLKS+PRMTFQL Sbjct: 61 VAAFELNNSNIRIIDLAVKYGYKSPDSFTRAFQSLHGITPSEARCNSKSLKSYPRMTFQL 120 Query: 121 TIRGGSEMNYRIEEKKAFRIVGLKKRVPIQFSGVNPEIAAMAQSLNLQMITELKQLSNTD 180 +I+G +EMNYRIEEK+AFRI+G+KKRVPI F+GVNPEIAAM +SL + I +LK+LSN + Sbjct: 121 SIKGENEMNYRIEEKEAFRIIGIKKRVPIIFNGVNPEIAAMWESLTFETINKLKKLSNIE 180 Query: 181 PAGIISASVNFSEGRMEEKGELDHYIGVATTLEGPEPYAQLEVAASTWAVFEAVGPFPDT 240 P G+ISASVNFSEGRMEEKGELDHYIGVATT E P+ +QLEV+ + WAVFEAVGPFPDT Sbjct: 181 PMGLISASVNFSEGRMEEKGELDHYIGVATTKECPDNLSQLEVSPTRWAVFEAVGPFPDT 240 Query: 241 LQNIWGRIYSEWFPSSSYELVEGPEMLWNESQDTASPTYRSEIWIPV 287 +QN+WGRIYSEWFPSS+YE +GPE+LWNE++D SP ++SEIWIPV Sbjct: 241 VQNVWGRIYSEWFPSSNYEQTKGPEILWNENKDVTSPNFKSEIWIPV 287 >B1Q6K1.1 B1Q6K1_CLOBO Transcriptional regulator, AraC family Length = 290 Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust. Identities = 207/287 (72%), Positives = 248/287 (86%) Query: 1 MNVLENMNDALSYIEDHLTEEIDFKEVTRRALCSEYHFKRMFSFLAGVPLSEYIRRRRLT 60 M+ L+ MND+++YIE++L EIDFKEV R A CSEYHF+RMFSFLAGV LSEYIRRRRLT Sbjct: 1 MDSLKRMNDSINYIEENLDGEIDFKEVARLAFCSEYHFQRMFSFLAGVSLSEYIRRRRLT 60 Query: 61 IAAFELQQSQLRIIDVAVHVGYSSPDAFTKAFQLFHGVTPSEARAGSPSLKSFPRMTFQL 120 +AAFEL S +RIID+AV GY SPD+FT+AFQ HG+TPSEAR S SLKS+PRMTFQL Sbjct: 61 VAAFELNNSNIRIIDLAVKYGYKSPDSFTRAFQSLHGITPSEARCNSKSLKSYPRMTFQL 120 Query: 121 TIRGGSEMNYRIEEKKAFRIVGLKKRVPIQFSGVNPEIAAMAQSLNLQMITELKQLSNTD 180 +I+G +EMNYRIEEK+AFRI+G+KKRVPI F+GVNPEIAAM +SL + I +LK+LSN + Sbjct: 121 SIKGENEMNYRIEEKEAFRIIGIKKRVPIIFNGVNPEIAAMWESLTFETINKLKKLSNIE 180 Query: 181 PAGIISASVNFSEGRMEEKGELDHYIGVATTLEGPEPYAQLEVAASTWAVFEAVGPFPDT 240 P G+ISASVNFSEGRMEEKGELDHYIGVATT E P+ +QLEV+ + WAVFEAVGPFPDT Sbjct: 181 PMGLISASVNFSEGRMEEKGELDHYIGVATTKECPDNLSQLEVSPTRWAVFEAVGPFPDT 240 Query: 241 LQNIWGRIYSEWFPSSSYELVEGPEMLWNESQDTASPTYRSEIWIPV 287 +QN+WGRIYSEWFPSS+YE +GPE+LWNE++D SP ++SEIWIPV Sbjct: 241 VQNVWGRIYSEWFPSSNYEQTKGPEILWNENKDVTSPNFKSEIWIPV 287 >A6TND0.1 A6TND0_ALKMQ Transcription activator, effector binding Length = 293 Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/287 (72%), Positives = 248/287 (86%) Query: 1 MNVLENMNDALSYIEDHLTEEIDFKEVTRRALCSEYHFKRMFSFLAGVPLSEYIRRRRLT 60 M+ L+ MN+ALSYIE++LT EIDFK V A+CSEYHFKRMFSFLAGV LSEYIRRRRLT Sbjct: 1 MDSLKKMNEALSYIEENLTNEIDFKAVAALAICSEYHFKRMFSFLAGVTLSEYIRRRRLT 60 Query: 61 IAAFELQQSQLRIIDVAVHVGYSSPDAFTKAFQLFHGVTPSEARAGSPSLKSFPRMTFQL 120 +AAFEL + +RIIDVA+ GYSSPD+FT+AF HG+TPSEA+ S SLK++P+MTFQL Sbjct: 61 LAAFELNNNDIRIIDVAIKYGYSSPDSFTRAFNRLHGITPSEAKVNSQSLKAYPQMTFQL 120 Query: 121 TIRGGSEMNYRIEEKKAFRIVGLKKRVPIQFSGVNPEIAAMAQSLNLQMITELKQLSNTD 180 +I+GG EMNYRIEEK+AF IVG+KKRVPI F GVNPEIAAM QSLN + I++LK+LSN + Sbjct: 121 SIKGGREMNYRIEEKEAFGIVGIKKRVPIIFEGVNPEIAAMWQSLNDEKISKLKELSNVE 180 Query: 181 PAGIISASVNFSEGRMEEKGELDHYIGVATTLEGPEPYAQLEVAASTWAVFEAVGPFPDT 240 P G++SAS NFSEGRMEEKGELDHYIGVATT E P+ ++LEV+ASTWAVFEAVGPFPDT Sbjct: 181 PLGLLSASTNFSEGRMEEKGELDHYIGVATTNECPDDLSKLEVSASTWAVFEAVGPFPDT 240 Query: 241 LQNIWGRIYSEWFPSSSYELVEGPEMLWNESQDTASPTYRSEIWIPV 287 LQNIWGRIYSEWFPSS+YE+ +GPEMLWNE ++ P ++SEIWIPV Sbjct: 241 LQNIWGRIYSEWFPSSNYEIAKGPEMLWNEEKELTDPNFKSEIWIPV 287 >C2N866.1 C2N866_BACCE Transcriptional regulator, AraC Length = 290 Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust. Identities = 207/287 (72%), Positives = 245/287 (85%) Query: 1 MNVLENMNDALSYIEDHLTEEIDFKEVTRRALCSEYHFKRMFSFLAGVPLSEYIRRRRLT 60 M+ L+NMN A+ YIED+LT EIDFKEV R ALCSEYHFKRMFSFLAG+ LS+YIR RRLT Sbjct: 1 MDSLKNMNTAMRYIEDNLTNEIDFKEVARLALCSEYHFKRMFSFLAGISLSDYIRCRRLT 60 Query: 61 IAAFELQQSQLRIIDVAVHVGYSSPDAFTKAFQLFHGVTPSEARAGSPSLKSFPRMTFQL 120 +AAFEL+ S ++IDVA+ GY+SPD+F +AFQ HG+TPSEAR S SLK++ MTFQL Sbjct: 61 LAAFELKDSNAKVIDVAIKYGYNSPDSFARAFQNLHGITPSEARNSSRSLKAYSPMTFQL 120 Query: 121 TIRGGSEMNYRIEEKKAFRIVGLKKRVPIQFSGVNPEIAAMAQSLNLQMITELKQLSNTD 180 +I+GG+EMNYRIEEK+ FRI+G+ KRVPI F+GVN EIA+M +SLN + I LK LSN + Sbjct: 121 SIQGGNEMNYRIEEKEPFRIIGITKRVPIVFNGVNEEIASMWKSLNPESIQTLKSLSNIE 180 Query: 181 PAGIISASVNFSEGRMEEKGELDHYIGVATTLEGPEPYAQLEVAASTWAVFEAVGPFPDT 240 P GIISAS NFSEGRMEEKGELDHYIGVATT + PE + QLEVAASTWA+FEAVGPFPD Sbjct: 181 PTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEEFKQLEVAASTWAIFEAVGPFPDA 240 Query: 241 LQNIWGRIYSEWFPSSSYELVEGPEMLWNESQDTASPTYRSEIWIPV 287 LQN+WGRIYSEWFPSS+YEL EGPE+LWNES+D +SP +RSEIW+PV Sbjct: 241 LQNVWGRIYSEWFPSSNYELAEGPEILWNESKDVSSPNFRSEIWVPV 287 >C2P5F6.1 C2P5F6_BACCE Transcriptional regulator, AraC Length = 290 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/287 (72%), Positives = 245/287 (85%) Query: 1 MNVLENMNDALSYIEDHLTEEIDFKEVTRRALCSEYHFKRMFSFLAGVPLSEYIRRRRLT 60 M+ L+NMN A+ YIED+LT EIDFKEV R ALCSEYHFKRMFSFLAG+ LS+YIR RRLT Sbjct: 1 MDSLKNMNTAMRYIEDNLTNEIDFKEVARLALCSEYHFKRMFSFLAGISLSDYIRCRRLT 60 Query: 61 IAAFELQQSQLRIIDVAVHVGYSSPDAFTKAFQLFHGVTPSEARAGSPSLKSFPRMTFQL 120 +AAFEL+ S ++IDVA+ GY+SPD+F +AFQ HG+TPSEAR S SLK++ MTFQL Sbjct: 61 LAAFELKNSNAKVIDVAIKYGYNSPDSFARAFQNLHGITPSEARNSSRSLKAYSPMTFQL 120 Query: 121 TIRGGSEMNYRIEEKKAFRIVGLKKRVPIQFSGVNPEIAAMAQSLNLQMITELKQLSNTD 180 +I+GG+EMNYRIEEK+ FRI+G+ KRVPI F+GVN EIA+M +SLN + I LK LSN + Sbjct: 121 SIQGGNEMNYRIEEKEPFRIIGITKRVPIVFNGVNEEIASMWKSLNPESIQTLKSLSNIE 180 Query: 181 PAGIISASVNFSEGRMEEKGELDHYIGVATTLEGPEPYAQLEVAASTWAVFEAVGPFPDT 240 P GIISAS NFSEGRMEEKGELDHYIGVATT + PE + QLEVAASTWA+FEAVGPFPD Sbjct: 181 PNGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEEFKQLEVAASTWAIFEAVGPFPDA 240 Query: 241 LQNIWGRIYSEWFPSSSYELVEGPEMLWNESQDTASPTYRSEIWIPV 287 LQN+WGRIYSEWFPSS+YEL EGPE+LWNES+D +SP +RSEIW+PV Sbjct: 241 LQNVWGRIYSEWFPSSNYELAEGPEILWNESKDVSSPNFRSEIWVPV 287 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,745,201,774 Number of extensions: 69207911 Number of successful extensions: 162493 Number of sequences better than 1.0e-05: 1891 Number of HSP's gapped: 162645 Number of HSP's successfully gapped: 1891 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)